mRNA_F-serratus_M_contig694.18050.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig694.18050.1
Unique NamemRNA_F-serratus_M_contig694.18050.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: D7G5J1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5J1_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 4.560e-105
Identity = 139/163 (85.28%), Postives = 149/163 (91.41%), Query Frame = 1 
Query:    1 SGVMVGRGIDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQGEDWDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVLR 489
            +GV+V R IDKARSRYPYCIVWTPLPLITWFIP+IGHMGIADSRGVIYDFAGPYTIGED+MAFGRPTRYLPL P RC+GE WDE+VA + ETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNM  LC WI FAGR+VSV GFL+QWLPF + LTLYLVLR
Sbjct:   23 AGVVVDRDIDKARSRYPYCIVWTPLPLITWFIPLIGHMGIADSRGVIYDFAGPYTIGEDHMAFGRPTRYLPLDPGRCKGEQWDESVAHSCETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMVSLCLWIFFAGRYVSVSGFLAQWLPFGLALTLYLVLR 185
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: A0A329T2L8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T2L8_9STRA)

HSP 1 Score: 220 bits (560), Expect = 2.230e-70
Identity = 93/158 (58.86%), Postives = 116/158 (73.42%), Query Frame = 1 
Query:   16 GRGIDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQGEDWDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVLR 489
            G  +D A  R+PYCIVW+P+P++TWF+P IGHMG+ADS+G+I+DFAGPYTIG D+ AFG  TRYL       + E WDEAVA     Y KRMHNLCCDNCHSHVA+ L+   YAG + WNM  LCFW+ F G++VSV GF+  WLPFA +L L  ++R
Sbjct:   44 GAVVDPAVHRFPYCIVWSPIPILTWFLPFIGHMGLADSKGIIFDFAGPYTIGRDDFAFGSATRYLQCTIPPEEAEKWDEAVAAGCRIYEKRMHNLCCDNCHSHVAVCLEHANYAGRKRWNMVQLCFWMFFRGKYVSVAGFIKSWLPFAFVLALIAIVR 201
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: A0A0M4EDZ0_DROBS (CG8372 n=2 Tax=Drosophila busckii TaxID=30019 RepID=A0A0M4EDZ0_DROBS)

HSP 1 Score: 219 bits (558), Expect = 3.350e-70
Identity = 96/156 (61.54%), Postives = 116/156 (74.36%), Query Frame = 1 
Query:   25 IDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQGED--WDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVL 486
            ID A  RYP+CIVWTP+P++TW +P IGHMGI  S G+I DFAGPY + EDNMAFGRPTRY+ L P+  +G    WDEAV++AS  Y  RMHNL CDNCHSHVA AL  MRY    SWNM +LCFW+   GR+V + GF+  WLPFAV+LTL ++L
Sbjct:   36 IDTALDRYPFCIVWTPIPVLTWILPFIGHMGICMSNGIIRDFAGPYLVTEDNMAFGRPTRYMRLHPKNVEGGAYAWDEAVSKASVLYGTRMHNLFCDNCHSHVATALCNMRYKECNSWNMIILCFWLFVCGRYVGICGFIKTWLPFAVLLTLIILL 191
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: UPI0003F0CFAF (transmembrane protein 222-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0CFAF)

HSP 1 Score: 218 bits (556), Expect = 6.750e-70
Identity = 96/154 (62.34%), Postives = 112/154 (72.73%), Query Frame = 1 
Query:   25 IDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQGEDWDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVL 486
            +DK RSRYPY IVWTP+P++TW  P IGHMGI  S GVI DFAGPY + ED M FG PTRYL L P   + E WD AV+ ASE Y  RMHNLCCDNCHSHVA+AL  M+Y G  SWNM  LCFWI F  ++V+  GFL QWLPF +++TL + L
Sbjct:   38 VDKQRSRYPYSIVWTPIPMLTWIFPFIGHMGICMSSGVIRDFAGPYYVSEDCMGFGNPTRYLQLNPSNTRKESWDIAVSSASEEYKNRMHNLCCDNCHSHVAMALNLMQYDGSTSWNMFKLCFWIFFRAKYVNFLGFLKQWLPFLLLVTLIVCL 191
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: D0NEB0_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NEB0_PHYIT)

HSP 1 Score: 216 bits (551), Expect = 2.900e-69
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 1 
Query:   28 DKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQGEDWDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVLR 489
            D A  R+PYCIVW+P+P++TWF+P IGHMG+ADS+GVI+DFAGPYTIG D+ AFG  TRYL         + WDEAV    + Y KRMHNLCCDNCHSHVA+ L+   YAG + WNM  LCFW+ F G++VSV GF+  WLPFA +L L  ++R
Sbjct:   30 DPAVHRFPYCIVWSPIPVLTWFLPFIGHMGLADSKGVIFDFAGPYTIGRDDFAFGSATRYLQCAVAPQDADKWDEAVTAGCKIYEKRMHNLCCDNCHSHVAVCLEHANYAGRKRWNMVELCFWMFFRGKYVSVAGFIKSWLPFAFVLALIAIIR 183
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: V9F8B3_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9F8B3_PHYPR)

HSP 1 Score: 217 bits (552), Expect = 3.670e-69
Identity = 90/163 (55.21%), Postives = 117/163 (71.78%), Query Frame = 1 
Query:    1 SGVMVGRGIDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQGEDWDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVLR 489
            +G   G  +D A  R+P+CIVW+P+P++TWF+P IGHMG+ADS+G+I+DFAGPYTIG D+ AFG  TRY+         + WDEAVA     Y KRMHNLCCDNCHSHVA+ L+   YAG++ WNM  LCFW+ F G++VSV  F+  WLPFA +L L  ++R
Sbjct:   39 TGGSKGAVVDPAVHRFPFCIVWSPIPILTWFLPFIGHMGLADSKGIIFDFAGPYTIGRDDFAFGSATRYIQCNVAPEDADKWDEAVAAGCNIYEKRMHNLCCDNCHSHVAVCLEHANYAGLKRWNMVELCFWMFFRGKYVSVAAFIKSWLPFAFVLALIAIIR 201
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: A0A3F2RC47_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RC47_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.400e-69
Identity = 92/155 (59.35%), Postives = 114/155 (73.55%), Query Frame = 1 
Query:   25 IDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQGEDWDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVLR 489
            +D A  R+P+CIVW+P+P++TWF+P IGHMG+ADS GVI+DFAGPYTIG D+ AFG  TRYL  K       +WDEAVA   + Y  RMHNLCCDNCHSHVA+ L+  +YAG   WNM  LCFW+ F G++VSV GFL  WLPFA +L L  ++R
Sbjct:   47 VDAAVHRFPFCIVWSPIPILTWFLPFIGHMGLADSNGVIFDFAGPYTIGRDDFAFGAATRYLQCKVEPEDVANWDEAVASGCKIYETRMHNLCCDNCHSHVAVCLEHFQYAGRRRWNMVHLCFWMFFRGKYVSVAGFLKSWLPFAFILALIAIVR 201
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: A0A7S1G5X6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5X6_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.940e-68
Identity = 95/155 (61.29%), Postives = 110/155 (70.97%), Query Frame = 1 
Query:   25 IDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQGEDWDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVLR 489
            IDK+RSRYPY IVWTPLPLITW IP IGHMGI DS G +YDFAGPY I ED MAF  PTRYL L P +     W++ V   +  YSKRMHNLCCDNCHSH A  L  M Y G  +WNM +LCFW+LFAGR+VS    +  W PF ++L + LVL+
Sbjct:   76 IDKSRSRYPYAIVWTPLPLITWLIPFIGHMGICDSEGRVYDFAGPYMINEDGMAFSEPTRYLTLDPSKATRTTWNQGVDIGNMVYSKRMHNLCCDNCHSHAARCLDEMGYLGFSNWNMVILCFWMLFAGRWVSFGKMVQSWAPFCLILGVILVLK 230
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: UPI000C6CB3CF (transmembrane protein 222-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6CB3CF)

HSP 1 Score: 213 bits (543), Expect = 4.470e-68
Identity = 93/156 (59.62%), Postives = 112/156 (71.79%), Query Frame = 1 
Query:   25 IDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQG--EDWDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVL 486
            +D  R RYP+CIVWTP+PL+TWF P IGHMGI  S GVI DFAGPY + EDNMAFG+PT+Y  L P   Q     WD AV+ ASE Y  RMHNL CDNCHSHV +AL  MRY    SWNM  LCF+IL  G++VS+WGFL  W+PF V++ + L++
Sbjct:   23 VDHQRVRYPFCIVWTPIPLLTWFFPFIGHMGIGMSSGVIRDFAGPYFVSEDNMAFGKPTKYWQLNPDLAQNGYHGWDRAVSEASEEYKHRMHNLFCDNCHSHVGMALNLMRYNDCSSWNMVKLCFYILINGKYVSIWGFLKTWMPFLVVVCIVLII 178
[Close]
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Match: A0A2P4X3X7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X3X7_9STRA)

HSP 1 Score: 214 bits (544), Expect = 6.650e-68
Identity = 91/158 (57.59%), Postives = 115/158 (72.78%), Query Frame = 1 
Query:   16 GRGIDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGPYTIGEDNMAFGRPTRYLPLKPRRCQGEDWDEAVARASETYSKRMHNLCCDNCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFAVMLTLYLVLR 489
            G  ID A  R+P+CIVW+P+P++TWF+P IGHMGIADS+GVI+DFAGPYTIG D+ AFG  TRYL           WDEAVA   + Y KRMHNLCCDNCHSHVA+ L+ + YAG + WNM  LCFW+ F G++V++ GF+  WLPF  +L L  ++R
Sbjct:   47 GAVIDAAVHRFPFCIVWSPIPILTWFLPFIGHMGIADSKGVIFDFAGPYTIGRDDFAFGAATRYLQCSIAPEDVAKWDEAVAAGCKIYEKRMHNLCCDNCHSHVAVCLEHVNYAGRKRWNMVELCFWMFFRGKYVNMAGFIKSWLPFVFVLALIAIVR 204
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig694.18050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5J1_ECTSI4.560e-10585.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A329T2L8_9STRA2.230e-7058.86Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A0M4EDZ0_DROBS3.350e-7061.54CG8372 n=2 Tax=Drosophila busckii TaxID=30019 RepI... [more]
UPI0003F0CFAF6.750e-7062.34transmembrane protein 222-like n=1 Tax=Saccoglossu... [more]
D0NEB0_PHYIT2.900e-6959.09Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
V9F8B3_PHYPR3.670e-6955.21Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A3F2RC47_9STRA7.400e-6959.35Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A7S1G5X6_9STRA1.940e-6861.29Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
UPI000C6CB3CF4.470e-6859.62transmembrane protein 222-like n=1 Tax=Centruroide... [more]
A0A2P4X3X7_9STRA6.650e-6857.59Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig694contigF-serratus_M_contig694:287432..295341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.5
Seed ortholog evalue5.8e-80
Seed eggNOG ortholog2880.D7G5J1
Preferred nameTMEM222
KEGG koko:K20726
KEGG Pathwayko04016,map04016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF778)
EggNOG OGsKOG3150@1,KOG3150@2759
Ec32 ortholog descriptionProtein of unknown function DUF778
Ec32 orthologEc-22_000840.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size492
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig694.18050.1prot_F-serratus_M_contig694.18050.1Fucus serratus malepolypeptideF-serratus_M_contig694 287432..295332 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932122.3180797-CDS-F-serratus_M_contig694:287431..2876421622932122.3180797-CDS-F-serratus_M_contig694:287431..287642Fucus serratus maleCDSF-serratus_M_contig694 287432..287642 -
1690964158.4900098-CDS-F-serratus_M_contig694:287431..2876421690964158.4900098-CDS-F-serratus_M_contig694:287431..287642Fucus serratus maleCDSF-serratus_M_contig694 287432..287642 -
1622932122.3314033-CDS-F-serratus_M_contig694:288611..2887861622932122.3314033-CDS-F-serratus_M_contig694:288611..288786Fucus serratus maleCDSF-serratus_M_contig694 288612..288786 -
1690964158.5030935-CDS-F-serratus_M_contig694:288611..2887861690964158.5030935-CDS-F-serratus_M_contig694:288611..288786Fucus serratus maleCDSF-serratus_M_contig694 288612..288786 -
1622932122.3477726-CDS-F-serratus_M_contig694:295235..2953321622932122.3477726-CDS-F-serratus_M_contig694:295235..295332Fucus serratus maleCDSF-serratus_M_contig694 295236..295332 -
1690964158.5156674-CDS-F-serratus_M_contig694:295235..2953321690964158.5156674-CDS-F-serratus_M_contig694:295235..295332Fucus serratus maleCDSF-serratus_M_contig694 295236..295332 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932122.3608458-UTR-F-serratus_M_contig694:295332..2953411622932122.3608458-UTR-F-serratus_M_contig694:295332..295341Fucus serratus maleUTRF-serratus_M_contig694 295333..295341 -
1690964158.526201-UTR-F-serratus_M_contig694:295332..2953411690964158.526201-UTR-F-serratus_M_contig694:295332..295341Fucus serratus maleUTRF-serratus_M_contig694 295333..295341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig694.18050.1

>prot_F-serratus_M_contig694.18050.1 ID=prot_F-serratus_M_contig694.18050.1|Name=mRNA_F-serratus_M_contig694.18050.1|organism=Fucus serratus male|type=polypeptide|length=161bp
MVGRGIDKARSRYPYCIVWTPLPLITWFIPIIGHMGIADSRGVIYDFAGP
YTIGEDNMAFGRPTRYLPLKPRRCQGEDWDEAVARASETYSKRMHNLCCD
NCHSHVALALKRMRYAGVESWNMAVLCFWILFAGRFVSVWGFLSQWLPFA
VMLTLYLVLR*
back to top

mRNA from alignment at F-serratus_M_contig694:287432..295341-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig694.18050.1 ID=mRNA_F-serratus_M_contig694.18050.1|Name=mRNA_F-serratus_M_contig694.18050.1|organism=Fucus serratus male|type=mRNA|length=7910bp|location=Sequence derived from alignment at F-serratus_M_contig694:287432..295341- (Fucus serratus male)
TCGGGAGTTATGGTGGGAAGAGGCATAGATAAGGCGCGCTCGCGGTACCC
CTACTGCATCGTCTGGACTCCACTACCCTTGATCACATGGTTTATCCCCA
TCATCGGTAAGGAATGGGAATGTTCGTAGTACGTCATGCAAACCGAACTC
GCTACCCCGAGCTCCTGTGAGCGGGTCGAAAGTATCACGGGGACACGACG
AACAAGGCATATCCTTGTAATTTTAGTTGTTTTTCCTCACCATTTCTCGC
CAGGCACCCATAATCTTAGTTTTTACGTAACGTCATTCGTAGAAAATGTA
AATTTTAGAGAAGAAAAATCTGAGCGCATCCAACATTCTTGCCGGTCGGG
GGAAGAAGCATGTTTGTCGCGTATGTCGGCTGTGAGAACCTCGAAAAACC
TGAACGCATCTACATCTTCTGAGCATCCCCTAGTCAGGGGGGGAAATGTC
AAATTATTTGTTACGGCACCCAGGTATGATATTCTTTGTGTCGAGCACGT
TGTGCGTCGCCCACTTCAAGTACTACCTGACTTCATGACCCATCTTCAAA
GATTCCCCTCCTATTTTCACGGACTTCCCCACAAATCAAATAATCGTTGT
ACAGTTGAATAGTGTTCAATAGCGCTTCCAAACGCCTTTAGTTCTGCCTT
CTATCAACATGCCCACTTCATTCCATTTCAGTAGTGGATATGGAGAAACA
GAGGCGCACACTAATTTGTCCATGGTGACCTGCAAAAAGGCAGCACCCGT
TACTGGAACTACCTTTAGGACTACTGGCCCTTTGCCGGCGGACTCTCGGC
AGTGAACGCCATCGGTACGCAATTGGATGACCCGATAACCTCGGCACTGA
CCCGATGGCGTATGGCGGTTTTAAATTAATGAATGGACGCCGCCGCGGAA
CACGGGAGGAATCCCGTACGGAAGCACCAGATTCAGCCTGAGTATGGAGA
TGAGCAGGCTGACGCGGGACGGGACTGCCGAATTCGTCTCGCGAGACCAA
ATTCTCAGGCGCGAACGCGGACAGGGAAATATTTATTTTCCCTGTTCAGC
TGACCACGAGCAGGATTGGCAACCTTACCCCGGTTGATCAATACTCTTAT
TATATGTGATGACTATAAACTATATTTTATTCTTCCAAGTGCAGTAGATA
CGGAGTGGTTGTAAACCCCTGTTAATCCTTGTGTAAGAAGCATACTTTTA
TTTGTGTTTTGTGCATCAAAAGTAGAACGGGACTACGGGAGTTCCCTCGC
CTTGATTTTTTGTTTATTTGTGGCACTGAGCCTAAAACCCGTATTATGCC
TTAAGCTGAACGGGTTCGGGCTTCTTCTCTCCCTAAGTTTGGCTTGCACC
GGGGCGTGCAGCGGTGATCTTTTTTTCCCATCGCCAAGTTTGCTGGAAGT
TTAGTCGACTCGAGTCGCGCAGATTTTGCGTCTCGGCGCCTACAGAACAA
ATCTCGTAAAACCTTCTCGTGCGCCAACGTTTCCACGTGCTCCGCGGTGC
GTTTGGCTTTGGTTGACCATGGTGTGACATAAGTAAGCGAGACGAAGGCG
AGGATTCTGTGATTAAGCACCAGATTAATAGATTCAGCCGAGGAGTGGAG
AATGAGCGGGTGCTGACGCGGGGCGAGACAGCCAAACCTGTACCGCGAGA
CCGATTTCTCGAGCCCGAACGGGGACAAAAAAAAACGAATTCTCTGTTCA
TCTGCCAACAGGAAGGATTGGGCAAAACCTTCCAGAGTTGATGCTGAACC
TGCTGTATGTGATGACCACACACAGACAAATACACACGGTAGACGTCTTC
CCCTTTTTTCCTCATGAGTGGGTTGTAAGGCAGCAGGCAGCACCATCAAG
GGATGAGGGGAAATAAGTGAAAGCGGGAGGTGAAGTAAAACGCACCGATC
TACCGACAAAGAGGGTCGGTTTTCGCTGTTTTTTAAAACGGGGCCATGAA
TAAGTGATGCAAGAAAACGCCAATCGCAGAGTAAAACCCCTGGATGTGTT
TGTTTGGGTTGGGGGTATTCAGTAGTTTCTCTTGAAAACTCCGACACCAG
CTCCCTTCAACTCCCACACGCCATGCATCATCGTAGTACTGGTGTCTAGC
TGACGTCTGATTCCAAGTCAATAGAATCGTGCCGTGTGTGGAAGCCATGC
ACCTGTGGTGGTCGGAGACCTACTCCTCGTCCCCGGACCTTGTTCATGCT
TGGAAGGTTTTCAAGGATAGGAGGCGTACCCTCAAGGGAACACTCTTGCC
CTGGTGTGGAGCACTGACTATAGCTAGGCTCTTCGTTGATATCACGGGAC
AGCGGTAGCAAAGCGTACAGTAGCTCTGTCCACATCTGCAAGTTGGGCTT
GACTGAGTGATTGCATGATAGATAAAATCAAGGCCGTATCGGTGGGTTGG
AATATCGGTGACCCTTATCTGGCATTTCTACACCCATACATAATTTGAGG
TACTCCGTATTATGTATGGTCATCACTTACAGCAAGGCTGATCGTTGGTC
ACTCACGATGCGGATAGTGTAGTTATATGTTGATCAATAGGGGACCAGGA
TAGGTTTCCTCATTTGGTTTGCTGCGTGTCTGTACGACACTTCGAGTGGT
TCATCCGAGTACCGGCGTGCTCTCGCCCACCTAGTTCAGTGTGTGTGTGT
GTTTCTATCCCCGTCAAAGCAATCCTGCATCAACCACGCACACTCCCTCT
CGCGAGGCATGTCATTTATCGTGGGTAGAGTCCTTCCCTTATGCTAGCAA
GTGTGCCGGCAAGGGCATCGACAAGGTCATCAAGCCGTCGGCATCGAAGG
CGTCAGAGAGGCGCGCGGCCAACGAGAAATCACCATCCGATAAAGCCCGG
TGCTCTTTCGTCGAGCCGAACAAGTCATCATGTTTCTTCTGTCTTTACCG
TCGCCGTAGAGCATGATGTGTAAGGCGTCACGTTTTTTACTGAGTATTTT
TTCACAATATTTGGTGGGTGCACGGTCTCTTTTTCCGGTAGTCGCTTTCC
CGTTGGCCGCGCGCTCCTCTGACGCCTTCGAGGCCGACGGCTTGATGCCC
TTGTCGGCACCTTTACCGGCACACTTGCCAGAACCCGTACCGGCACCATT
CACCCTTGTCGGTACGGGTGCTGGCAAGTGTGCGGGCAAGGGTGCTGGCA
ATGGTGCCGGCAAGGGCATCAAGCCGCCGGCATCGAAGGCGTCAAAGGGG
AGCGCGGCCAACGAGAAAGCGACTGCCGGGAAAAGAGACCGTGCACCCAC
CAAATATTGTGAAGAAGTACTGCGTAAAAAAGGTGACGCTTTACACATCA
TGCTCTACGGCGACGGTAAAGACAGAACAAAGATGATGGCTTGATCGGCT
CGACGACAGAGCACCGGGCTTTATCGGATGGTGATTTTTGTGCTAATAGT
TGGGATCCTCTTCACCCACCATGCGGTTTAGAGGGGATCTGCTTCGGACC
ATCAGCAACATCAACAGGAAGCCACGATAGATCCGTCGGGTCAGATAGAA
CTCAGCTCGTCCAACGAGCAAGCTTAGCTGAAGAGCGAGCTCGACGCGTT
CCAGTCGGAGATCGACGACCTGCGGAAGTTGTCTGGGACAGAGGCCAAGG
CTCTGGAGGCGTGGAAACAGGTCGAAAAGCACGCCGACGGCAAGGAGGAG
ATCCGTCGCAAGCTGGAGAGGACTGCCTCTGAGTTGGAGATCGCCCAGAA
GCCCCGCCAGGTCAGCCTGTCGACCATCCTTGCCGACCTACGGTATTTGT
TCCACGATCTCGCGCACCAGAGCGCCGATGCGCGGGACGACATCGTTTCC
ATGAGCACGGTTCAGTTGGAAAAGGCGTTAAAAACGATACAGCCTCTTTG
GAAGACTGCAAGGGAAGTCGTGGACCCCCTGCTGGAGGTGGTCGTGTCGG
CGACGGCGCCGCAGAGGAAGAAGGCCGCCGAAGTTGTCGCGGAGTACTCG
AGGAAGATCGACGATGCTGTCATGAGGCTGGCCGGGGAGAAATGGGCTGA
AATCATTTCAGCAAACTCCAAGGTGGCGCACCAGGCTTTTCAGACGGCAA
CGTCCGCTTCCTGAACTGCAATGACAGGATGATTGGCCTAGTCATGCTCC
CACGTAATTCTTCCTTCTACAGGGCTGAAGTCGACATGCCCAATGGAAAA
AACAGGGCTGCAGTTCCAGCGTCGCGGGAATACATTATTCCGTGGTCAAG
GTACCACGATAAATTGAAGGAGTTACTGGAGACATGAAGAAGTAAATTAA
GGCCGGGGTTCGGGTCCACCGCGGTATGAGAGGAATACTATAAGAGCTTC
GGCACGTTAAACCTGGGAATGGCAGGGGATCAGACGCAGTACCTCCTGTG
GCGCCTTCAGAACGGCGAACTCCCCGACGTGCTTCAGCCCGAGTCATTCT
CGTGGCGATAGGAACAAACAACCTGGGAAGTGACATGGACGCTCAGGACA
CAGTGGGCGGGATCAAGGCCGTCGTTTCGACGGATCAGGCGGATAAGGTC
ACCAAGTATGCGTACTTTGGAGTGATGACTACGGTCGCGGCGATTCTTCT
CCACCTGACGAAGCCGGTTCTGTCCCACGCCGCCATCCCTCTGGTCCGGA
CTGTGCTCCGATGGGCCCTGTGGCTCATCTACTTGCCGATAAGGGAAGGA
CTCTACCCACGATAAGATGACATGCCTTGCGAGAGGGAGTGTGCGTGGTT
GATGCAGGATTGCTTTGATGGGGATAGAAACACACACACACTCACAGAAA
CACTGAATTAGGTGGGCGAGAGCACGCCGATGCTTGGACGAACCACTCGA
AGTATCGTACAGGCATGCAACACACCAAATGAGGAACCCTATCCTGGTCC
CCTATTGGTCAACATAGAACTACCCTATCCGCCGCATCGTGAGTGACCAA
CGATCAGCCCCCCTTACGAGTGATCGATAGGTACCTAAATAGCCCCCCAA
ATCCATTATATCCTACAAGACTTAAAACAGCCCTGCAGCTGTGCCATAAC
ACAAGCATTCATACGCGCACAAAACATACAGAAATCAACATACATGCATT
AGATCACCGATCCACCGCAAATTCAAAACAAACTCGTCAAACACTCAAAT
TCATTAAGAAACGTCGGTGAATCGCGAACGCATCAAATCGCTACGATGTC
TGCATGCTGACATTCAGAAGAAAGCGTGCTGAAATATCCTTCTGGGGAGC
AAGCTTTCAAAGGAAACTTATTGTATAACCCTGGAACTTTGACACTCAAA
GCATACCCAAATGTTACTCGGCATCATTTGATATTAATCAACTAACGAGG
ACTTTAGTGGTACGTAATTTCTCACCATGTGCCATATATAAGCCAAATCA
TTGCAAATGTTTAGAATGCCTTTCCAACAACTCTTTGCAAACGCATAAAA
TTTGGCATGTCATACAAACACAATCTGGCTAATGATATTTAACGCATTTA
CTATTCCATGCGGGCAACTTGATTCTTCCGACTGCACTCTTGTCAAAAAA
AAACTCCCTTCTTGATGTCTCCAGTAGCTCCTTCAATTTATCGTGGTACA
TTTAGCTCTGTCCACATCTGCAAGTTGAGCTTGACTGAGTGGTTGCATCA
TAGATCTAATCGAGGCTGTATCGGTGGGTTGGAATATCGGTGACCCTTAT
GTGGCAGTTCTACACACCATACATCGTTTGTATTATGTATGGTTATCACT
TACAGCAGGGTATAGATCAACCGGGCCAGGTTGTCAACCCTGCTCGTGGT
CAGCTGAACAGGAAACCTGATGTTTGCCCTCTCCCAGTTCGCGCCTGAGA
ATTTGGCCTCGCTAGACGGGTTCAGCTATTCCATCCCGCGTCAGCCTACC
TTCTCCATAGTCAGGCTGAATCCGGTGCTAACTCGCGGGATTCCTCGCTA
TTTCTGCGGTGGCATCCATTTTTTTATGCCGCCAATCGCCATCGAATCAA
TCCAGAGTTTACGAGGCCACGCAATTGCGTGTCGATGACGTTCACTGCCG
AGAGTTGGTCGGCACAGGGCCAGTAGTCCTCAAGGTAGTTCCAATAACGG
GTGCAATCTTTGCAGGTATCACCATGGACCAATTTGTGTGCGCGTCTCTG
TTCCCACACGACCCTATTGGTATGTATGTAGTGGACATGTGTGATACAGA
AGTATCAAAAAGGCTCAATTAAGCATATAACAAAGGCAACCGATCCCACA
ACCTGTCTGTCATAATGGTTCTCCAACTGTGCTGCTGCGATATGTACATA
TGTCTGAGCGTTTTCTTAAGGGCTCCGTATAACCCCGCACCCACCACCGT
GCGGGGAGCGGGGCTTTTTGACCATCAAAATATTTTCAATCGTTCATGCT
AGAGCTGTGGAATTCTCGCGCATTACCTATACACCTTTTCTTGTATGTAC
TTGTAGACAGACACCACAGACACCAGACCGGCGTATACATCTGGTACAAA
TATCATTGCCATTTCCACGCAAACGGTCGGATACACACCTGAGCCAAACC
ATCCCCAAGTTTGGTTTAAAGTTTTTTCCCCGTGGGCGTGCGACGACCGA
GGTAGGACACATGGGCATCGCCGACTCTCGCGGAGTGATCTACGACTTTG
CCGGGCCCTACACCATCGGAGAAGACAACATGGCCTTTGGCCGTCCCACG
CGCTATCTGCCTCTCAAGCCCAGGCGGTGCCAGGGGGAAGACTGGGACGA
GGCCGTCGCGCGGGCCTCCGAGACTTACAGGTGTCAGCTGTACAAAATAT
TAAAGATCCTTCTTTAATACAAGCTCTTCTTTCCCTCGTGCATTTGTTTG
TCGGCGTTTCTTATCCTGCCAGGAAAAAATCCTGATTTTCGTTGGATTTT
GCAGTCCCCCAAGGACAATCATGAATGTACAGAGTATGCTATACTTTCGT
CAAAACACTATACTTGCTCGTCAAAATTCTAAACTTTCGCAGAAAGTCGG
GAAGCCAGTAAGCGCTATTCAACTGACGGTACTGTACCTTAGAAAAAAAA
CTACCTCGGTTGCGAAATGCTGTATATTGTATAGCTTCTATTCTATTATG
AAGACAAAAGGTACCTGGAAATATCGTGTATCGGCAGCCAAAAAGTGTAT
AATAGTATTTTGTACCTGCATGATTTTTATATTCAATAGATTTGTATCAT
TTACACCACGCATGAAATCAACTCAACATTCCCTCCCCTCCCCTCCCCTC
ATGTCTCCGCAAAACTTACCATTAGACAATTAAGCAGTTGCAAAAATACG
AAGTGTGTAACCATCTGTAGAAAGATTGAAAAATATTGTCATCCGCCGCT
GTGTTCGTGGATGAAATAAATACCCTTTTCCGTTATCGGTTGTAGTTTTA
TTCCCCTGTTTGAGGGGGCGTTGATTTTTTCCCCCCCATTTCAAAACTTA
CTAAACACTGTAGACTATGGTCACACATATAGCAAGGGTATGGATCAACC
GGGTAAGGTTGCCAATCCTGCTCAAAAGAATGAATGAACTATAAAATGTC
ACGACCCTCAGATTATGTCGCTTATCGTTAAGCTTTTGCTGTCTCTAGGG
TCTCGGCCAAGCTGGCACATATTAACACACGAGCGCTGTACAACATGACT
CAAAATAAAATCCTCGACCTGCGCGACTTTGCCCCCCCCCCCCCCCCCCC
CTCCCCTGCTTGGTTCTTTCCCTGCCCTGCCCTGCCGCGCGGCTCTCAGC
AAACGGATGCACAACCTATGCTGCGATAACTGTCACTCCCACGTGGCGCT
AGCGCTCAAGAGGATGCGATACGCCGGGGTCGAGAGCTGGAACATGGCGG
TCCTCTGTTTCTGGATCTTGTTCGCGGGTCGTTTCGTTTCAGTATGGGGG
TTTCTCAGCCAGTGGCTTCCGTTCGCGGTGATGCTCACGCTGTACTTGGT
GTTGCGATGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig694:287432..295341-

>mRNA_F-serratus_M_contig694.18050.1 ID=mRNA_F-serratus_M_contig694.18050.1|Name=mRNA_F-serratus_M_contig694.18050.1|organism=Fucus serratus male|type=CDS|length=966bp|location=Sequence derived from alignment at F-serratus_M_contig694:287432..295341- (Fucus serratus male)
ATGGTGGGAAGAGGCATAGATAAGGCGCGCTCGCGGTACCCCTACTGCAT
CGTCTGGACTCCACTACCCTTGATCACATGGTTTATCCCCATCATCGATG
GTGGGAAGAGGCATAGATAAGGCGCGCTCGCGGTACCCCTACTGCATCGT
CTGGACTCCACTACCCTTGATCACATGGTTTATCCCCATCATCGGACACA
TGGGCATCGCCGACTCTCGCGGAGTGATCTACGACTTTGCCGGGCCCTAC
ACCATCGGAGAAGACAACATGGCCTTTGGCCGTCCCACGCGCTATCTGCC
TCTCAAGCCCAGGCGGTGCCAGGGGGAAGACTGGGACGAGGCCGTCGCGC
GGGCCTCCGAGACTTACAGGACACATGGGCATCGCCGACTCTCGCGGAGT
GATCTACGACTTTGCCGGGCCCTACACCATCGGAGAAGACAACATGGCCT
TTGGCCGTCCCACGCGCTATCTGCCTCTCAAGCCCAGGCGGTGCCAGGGG
GAAGACTGGGACGAGGCCGTCGCGCGGGCCTCCGAGACTTACAGCAAACG
GATGCACAACCTATGCTGCGATAACTGTCACTCCCACGTGGCGCTAGCGC
TCAAGAGGATGCGATACGCCGGGGTCGAGAGCTGGAACATGGCGGTCCTC
TGTTTCTGGATCTTGTTCGCGGGTCGTTTCGTTTCAGTATGGGGGTTTCT
CAGCCAGTGGCTTCCGTTCGCGGTGATGCTCACGCTGTACTTGGTGTTGC
GATGACAAACGGATGCACAACCTATGCTGCGATAACTGTCACTCCCACGT
GGCGCTAGCGCTCAAGAGGATGCGATACGCCGGGGTCGAGAGCTGGAACA
TGGCGGTCCTCTGTTTCTGGATCTTGTTCGCGGGTCGTTTCGTTTCAGTA
TGGGGGTTTCTCAGCCAGTGGCTTCCGTTCGCGGTGATGCTCACGCTGTA
CTTGGTGTTGCGATGA
back to top