mRNA_F-serratus_M_contig694.18046.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig694.18046.1
Unique NamemRNA_F-serratus_M_contig694.18046.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig694.18046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig694contigF-serratus_M_contig694:249292..250379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1077
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig694.18046.1prot_F-serratus_M_contig694.18046.1Fucus serratus malepolypeptideF-serratus_M_contig694 249347..249913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932120.0222158-UTR-F-serratus_M_contig694:249291..2493461622932120.0222158-UTR-F-serratus_M_contig694:249291..249346Fucus serratus maleUTRF-serratus_M_contig694 249292..249346 +
1690964157.1772292-UTR-F-serratus_M_contig694:249291..2493461690964157.1772292-UTR-F-serratus_M_contig694:249291..249346Fucus serratus maleUTRF-serratus_M_contig694 249292..249346 +
1622932120.0541615-UTR-F-serratus_M_contig694:249913..2501841622932120.0541615-UTR-F-serratus_M_contig694:249913..250184Fucus serratus maleUTRF-serratus_M_contig694 249914..250184 +
1690964157.1974554-UTR-F-serratus_M_contig694:249913..2501841690964157.1974554-UTR-F-serratus_M_contig694:249913..250184Fucus serratus maleUTRF-serratus_M_contig694 249914..250184 +
1622932120.0730662-UTR-F-serratus_M_contig694:250195..2503791622932120.0730662-UTR-F-serratus_M_contig694:250195..250379Fucus serratus maleUTRF-serratus_M_contig694 250196..250379 +
1690964157.207441-UTR-F-serratus_M_contig694:250195..2503791690964157.207441-UTR-F-serratus_M_contig694:250195..250379Fucus serratus maleUTRF-serratus_M_contig694 250196..250379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932120.0377011-CDS-F-serratus_M_contig694:249346..2499131622932120.0377011-CDS-F-serratus_M_contig694:249346..249913Fucus serratus maleCDSF-serratus_M_contig694 249347..249913 +
1690964157.187556-CDS-F-serratus_M_contig694:249346..2499131690964157.187556-CDS-F-serratus_M_contig694:249346..249913Fucus serratus maleCDSF-serratus_M_contig694 249347..249913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig694.18046.1

>prot_F-serratus_M_contig694.18046.1 ID=prot_F-serratus_M_contig694.18046.1|Name=mRNA_F-serratus_M_contig694.18046.1|organism=Fucus serratus male|type=polypeptide|length=189bp
MNTSAPDTSGGGAGASPACAGAPPARATAGPGDDVDVAGNVANGVNASAM
AAGDLVDAGILAMAADDIVDASVSAMAADDLADAGVSAMAADDDHSPASD
SLGVSASAGAAPSGDGHGASDSGTEADICLAKEAKDEFVGLGGGRDGYGE
AGAFVYRSCSAAAELGEGGAGVTPMAVDGDTLEGHSER*
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mRNA from alignment at F-serratus_M_contig694:249292..250379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig694.18046.1 ID=mRNA_F-serratus_M_contig694.18046.1|Name=mRNA_F-serratus_M_contig694.18046.1|organism=Fucus serratus male|type=mRNA|length=1088bp|location=Sequence derived from alignment at F-serratus_M_contig694:249292..250379+ (Fucus serratus male)
CGACGGAGTCGTCACTCAGAGAAAACCCTCTATTCCTCGGGGCGGGGCGG
CTCCGATGAACACATCTGCGCCGGACACTTCTGGCGGAGGCGCTGGTGCT
TCCCCTGCTTGTGCTGGTGCTCCCCCTGCTCGTGCTACTGCAGGCCCTGG
CGACGATGTAGACGTTGCCGGAAACGTCGCTAATGGCGTAAATGCCTCGG
CGATGGCTGCTGGTGATCTCGTCGACGCAGGCATCTTGGCGATGGCTGCT
GATGATATCGTCGACGCAAGCGTCTCGGCGATGGCTGCTGATGACCTCGC
CGACGCAGGCGTCTCGGCGATGGCCGCTGATGATGACCATTCCCCGGCCT
CCGATAGCTTAGGTGTCTCGGCGAGTGCTGGTGCGGCTCCTTCCGGTGAC
GGCCACGGCGCAAGCGACAGCGGGACGGAAGCGGATATTTGCCTCGCGAA
GGAAGCGAAAGACGAGTTCGTCGGTCTAGGAGGCGGACGGGATGGCTACG
GCGAGGCCGGAGCATTCGTTTACCGCAGCTGCTCCGCGGCGGCCGAACTC
GGCGAAGGAGGTGCCGGTGTTACCCCCATGGCTGTGGACGGAGACACACT
TGAAGGCCATTCGGAACGATGATCTTGAGATTTGATACTCCGCTGATATT
CGGTTGCGTGCTCCGTACCTAGTCTTCCATGTGGTGTTGTGTTTGGTAGA
AATTGCAGCACGTTCTTTTTCGTGCCTTCTGTCCGGCGGGTTTGACTGTT
TGGGGGTCGTGGAGCATTTTGAGTCGATATCCAGGAATCTGAGAATAATG
TGTTTTTTGTTTGTTTCTGTTTCCGTTTTTTGTTGCGTTTTAAAACAAGC
AAAAAAACTATCAAATGTTGTTTTTTTAACATTTTTCCCCTAGGACGGTT
TGTTGACGGTTTGTTCCAAATCGTCGGTATACTTGTTTGTGGGACTGATC
CATTTGATCATCAAGTTCTTTTTAAGAAGCGGCAGCATATGTACTCTAAA
AGGAGGTGCAGAGGTTTTTTAGAAAGAATTTCAATCTCTTTTGGGGGTGT
GTGTGTGTGTTTTTTTTTCATATGTTTTTTTTATCCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig694:249292..250379+

>mRNA_F-serratus_M_contig694.18046.1 ID=mRNA_F-serratus_M_contig694.18046.1|Name=mRNA_F-serratus_M_contig694.18046.1|organism=Fucus serratus male|type=CDS|length=1134bp|location=Sequence derived from alignment at F-serratus_M_contig694:249292..250379+ (Fucus serratus male)
ATGAACACATCTGCGCCGGACACTTCTGGCGGAGGCGCTGGTGCTTCCCC
TGCTTGTGCTGGTGCTCCCCCTGCTCGTGCTACTGCAGGCCCTGGCGACG
ATGTAGACGTTGCCGGAAACGTCGCTAATGGCGTAAATGCCTCGGCGATG
GCTGCTGGTGATCTCGTCGACGCAGGCATCTTGGCGATGGCTGCTGATGA
TATCGTCGACGCAAGCGTCTCGGCGATGGCTGCTGATGACCTCGCCGACG
CAGGCGTCTCGGCGATGGCCGCTGATGATGACCATTCCCCGGCCTCCGAT
AGCTTAGGTGTCTCGGCGAGTGCTGGTGCGGCTCCTTCCGGTGACGGCCA
CGGCGCAAGCGACAGCGGGACGGAAGCGGATATTTGCCTCGCGAAGGAAG
CGAAAGACGAGTTCGTCGGTCTAGGAGGCGGACGGGATGGCTACGGCGAG
GCCGGAGCATTCGTTTACCGCAGCTGCTCCGCGGCGGCCGAACTCGGCGA
AGGAGGTGCCGGTGTTACCCCCATGGCTGTGGACGGAGACACACTTGAAG
GCCATTCGGAACGATGAATGAACACATCTGCGCCGGACACTTCTGGCGGA
GGCGCTGGTGCTTCCCCTGCTTGTGCTGGTGCTCCCCCTGCTCGTGCTAC
TGCAGGCCCTGGCGACGATGTAGACGTTGCCGGAAACGTCGCTAATGGCG
TAAATGCCTCGGCGATGGCTGCTGGTGATCTCGTCGACGCAGGCATCTTG
GCGATGGCTGCTGATGATATCGTCGACGCAAGCGTCTCGGCGATGGCTGC
TGATGACCTCGCCGACGCAGGCGTCTCGGCGATGGCCGCTGATGATGACC
ATTCCCCGGCCTCCGATAGCTTAGGTGTCTCGGCGAGTGCTGGTGCGGCT
CCTTCCGGTGACGGCCACGGCGCAAGCGACAGCGGGACGGAAGCGGATAT
TTGCCTCGCGAAGGAAGCGAAAGACGAGTTCGTCGGTCTAGGAGGCGGAC
GGGATGGCTACGGCGAGGCCGGAGCATTCGTTTACCGCAGCTGCTCCGCG
GCGGCCGAACTCGGCGAAGGAGGTGCCGGTGTTACCCCCATGGCTGTGGA
CGGAGACACACTTGAAGGCCATTCGGAACGATGA
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