mRNA_F-serratus_M_contig1239.1813.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1239.1813.1
Unique NamemRNA_F-serratus_M_contig1239.1813.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1239.1813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1239contigF-serratus_M_contig1239:183562..184173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size314
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1239.1813.1prot_F-serratus_M_contig1239.1813.1Fucus serratus malepolypeptideF-serratus_M_contig1239 183687..184155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.0089417-UTR-F-serratus_M_contig1239:183561..1836861622929160.0089417-UTR-F-serratus_M_contig1239:183561..183686Fucus serratus maleUTRF-serratus_M_contig1239 183562..183686 +
1690962728.8774154-UTR-F-serratus_M_contig1239:183561..1836861690962728.8774154-UTR-F-serratus_M_contig1239:183561..183686Fucus serratus maleUTRF-serratus_M_contig1239 183562..183686 +
1622929160.0581691-UTR-F-serratus_M_contig1239:184155..1841731622929160.0581691-UTR-F-serratus_M_contig1239:184155..184173Fucus serratus maleUTRF-serratus_M_contig1239 184156..184173 +
1690962728.909302-UTR-F-serratus_M_contig1239:184155..1841731690962728.909302-UTR-F-serratus_M_contig1239:184155..184173Fucus serratus maleUTRF-serratus_M_contig1239 184156..184173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.0233037-CDS-F-serratus_M_contig1239:183686..1838161622929160.0233037-CDS-F-serratus_M_contig1239:183686..183816Fucus serratus maleCDSF-serratus_M_contig1239 183687..183816 +
1690962728.8910284-CDS-F-serratus_M_contig1239:183686..1838161690962728.8910284-CDS-F-serratus_M_contig1239:183686..183816Fucus serratus maleCDSF-serratus_M_contig1239 183687..183816 +
1622929160.0421102-CDS-F-serratus_M_contig1239:184114..1841551622929160.0421102-CDS-F-serratus_M_contig1239:184114..184155Fucus serratus maleCDSF-serratus_M_contig1239 184115..184155 +
1690962728.9005244-CDS-F-serratus_M_contig1239:184114..1841551690962728.9005244-CDS-F-serratus_M_contig1239:184114..184155Fucus serratus maleCDSF-serratus_M_contig1239 184115..184155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1239.1813.1

>prot_F-serratus_M_contig1239.1813.1 ID=prot_F-serratus_M_contig1239.1813.1|Name=mRNA_F-serratus_M_contig1239.1813.1|organism=Fucus serratus male|type=polypeptide|length=57bp
MGSTSLLGFFLPQPASCFLNLLLLLFYFYFLANVGTFSGSFYFILLFFCT
LVWVSL*
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mRNA from alignment at F-serratus_M_contig1239:183562..184173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1239.1813.1 ID=mRNA_F-serratus_M_contig1239.1813.1|Name=mRNA_F-serratus_M_contig1239.1813.1|organism=Fucus serratus male|type=mRNA|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig1239:183562..184173+ (Fucus serratus male)
CTCCCCGGCATCGTAGGGGAgGGGGGATAGCGTCCTCTTCAAATTTAGTT
TTGTACCTGTATTGGTACCCCTATATATATCTGTATTTCATTTTATTTTG
TGACTCAGCTCCCGAGTTTGGAGCGATGGGCTCTACTTCCTTGTTGGGTT
TTTTCTTGCCTCAACCTGCTTCTTGTTTTCTGAACTTGTTATTATTATTA
TTTTATTTTTATTTTTTGGCTAATGTTGGAACCTTCTCTGGGTCTTTTTA
TTTTATTGCGAGCGTTTAGCGAGCTTCTAATCTGACAGCTGTATCAATTT
GAGCTCGGGTGTATCAAAATACGGGGCACTTTGACCAATCATGAATGTGC
CGTATGTTCCTTTTCGTAATGTTAAAAATGTTACTCCGTCAAAAGTTTTC
TCTTTATGGGAGACAGAAAAAAGAAATTTCTGTCGTATGGGAGCGTATGG
GAGACAGAAAAATGAAATTTCACATTGAACCAACACCTGTGTTAAGCTGA
CGATAGTTACAGGACTATCCTTTAGCGAGCGTATAGCGATAGCTACCCTA
TCTTTTTATTATTTTTCTGTACCTTAGTTTGGGTTAGCCTGTGACCACGG
AAATTCGTTTCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1239:183562..184173+

>mRNA_F-serratus_M_contig1239.1813.1 ID=mRNA_F-serratus_M_contig1239.1813.1|Name=mRNA_F-serratus_M_contig1239.1813.1|organism=Fucus serratus male|type=CDS|length=342bp|location=Sequence derived from alignment at F-serratus_M_contig1239:183562..184173+ (Fucus serratus male)
ATGGGCTCTACTTCCTTGTTGGGTTTTTTCTTGCCTCAACCTGCTTCTTG
TTTTCTGAACTTGTTATTATTATTATTTTATTTTTATTTTTTGGCTAATG
TTGGAACCTTCTCTGGGTCTTTTTATTTTAATGGGCTCTACTTCCTTGTT
GGGTTTTTTCTTGCCTCAACCTGCTTCTTGTTTTCTGAACTTGTTATTAT
TATTATTTTATTTTTATTTTTTGGCTAATGTTGGAACCTTCTCTGGGTCT
TTTTATTTTATTTTATTATTTTTCTGTACCTTAGTTTGGGTTAGCCTGTG
ATTTTATTATTTTTCTGTACCTTAGTTTGGGTTAGCCTGTGA
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