prot_F-serratus_M_contig693.18035.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig693.18035.1
Unique Nameprot_F-serratus_M_contig693.18035.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length722
Homology
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 396 bits (1017), Expect = 1.240e-129
Identity = 202/290 (69.66%), Postives = 233/290 (80.34%), Query Frame = 0
Query:  395 GVFQEXXXXXXXKEDMAFGEWFGFGGGRRGGVGGSEATVLDSVVWRLGIDKFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFDKLYKAWPAN---KTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQVNQLVTDSLYKAMLNMRLRRKFVYSNDKELFIHDA 681
            GVF+E       +E+       G  GG    +G   ATVLDSV+W+LG DKFHRDFRN +LLGLVQDRFP+S LAY+VVKVMLD+S+PTERK+ EQ +  +SAR LFDKL +AW  N   K K +PDW  F++WM A+C+DLT MVS I GSD QNP+Y+VN+A MVQYIR  LVKCT RDRYGKETARIMEILLQNK+L+QQQV EMAM+PP DAR RLYRL+RDRMVS+QEVPKRADRNPN TF+LWTIKHDQV Q+V +SLYKAMLNMRLRRKFVYSNDK LFIHDA
Sbjct:    3 GVFEEEGEGGHAEEE-------GVLGGXXXXIGAG-ATVLDSVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASISARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKALFIHDA 284          
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 2.110e-111
Identity = 241/452 (53.32%), Postives = 280/452 (61.95%), Query Frame = 0
Query:    1 MAFLLETQLPKPGLESSRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLAELTRLVQRDQGIMGVSRAGKTRTTVTSSHVKESLLIMMQHNMVTATMPTERELRKAKANAS-RPANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGMVVDCFLRHGRRTLPEVKMEVLHRAEGLARIRQAQAATWEDEVE---DTEAEVTAGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTASSGKXXXXXXXXXXXXXXXXXXRELEERQRKGAAQTAARKRRRIG---DSSGSAGGADAPEASDEEDELPVEMRGMVSRVGAGSGSSGAGLDWRPPPSKRIRQHEGXXXXEEGLADAPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFQEXXXXXXXKEDMAFGEWFGFGGGRRGGVGGSEATVLDSVVWRLGIDK 445
            MAFLLE+Q+P   LESSRR LVLSV+EEYHGPIV+TVAEVLMR ERTTLAELTRLV RDQGIMGVSRAGKTRT VT+++VKESLLIM QHNMV A MPTE+E+RKA+A++S R +N+RL+YTL PLE LVRTRGP FH  A   F KVAG+VVDCFLRHGRRTLP+VK E+L R    AR R+A A   +       D   EVT+ +IQKSF++LVM KYIDKVPKLDLVT    PEKAKKPSMTFG  +                     +EL ERQ+KGAAQ +ARKRR +G   +S+G  G            ELPVEMR +VS +  G    GA  D RP                 G A   +  XXXXXXXX                       GVF+E        E+           GRRG   G+ ATVLDSV+W+LG DK
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPADNDSKGKSASAANGQNGRN--KELAERQQKGAAQRSARKRRMLGQDSNSNGVDGXXXXXXXXXXXXELPVEMRSLVSSMEEGFDGGGA-TDGRPXXXXXXXTAASGRGG--GTAGRTRGRXXXXXXXXKRGETVSGKGKGRLDMD------GVFEEEGEGGHADEEDVL--------GRRGLGVGAGATVLDSVLWKLGFDK 433          
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 4.490e-103
Identity = 205/299 (68.56%), Postives = 233/299 (77.93%), Query Frame = 0
Query:    1 MAFLLETQLPKPGLESSRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLAELTRLVQRDQGIMGVSRAGKTRTTVTSSHVKESLLIMMQHNMVTATMPTERELRKAKANAS-RPANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGMVVDCFLRHGRRTLPEVKMEVLHRAEGLARIRQAQAATWEDEVE---DTEAEVTAGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTASSGKXXXXXXXXXXXXXXXXXX-----RELEERQRKGAAQTAARKRRRIG 290
            MAFLLE+Q+P   LESSRR LVLSV+EEYHGPIV+TVAEVLMR +RTTLAELTRLV RDQGIMGVSRAGKT T VT+++VKESLLIM QHNMV A MPTE+E+RKA+A++S R  N+RL+YTL PLE LVRTRGP FH  A   F KVAG+VVDCFLRHGRRTLP+VK E+L R    AR R+A A   +       D   EVT  +IQKSF++LVM KYIDKVPKLDLVT    PEKAKKPSMTFG  +   XXXXXXXXXXXXXXX        +EL ERQ+KGAAQT+ARKRR +G
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQTSARKRRMLG 299          
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: W7U6Z3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6Z3_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.540e-38
Identity = 192/758 (25.33%), Postives = 315/758 (41.56%), Query Frame = 0
Query:   10 PKPGLESSRRN---LVLSVLEEYHGPIVATVAEVLMRTERTTLAELTRLVQRDQGIMGVSRAGKTRTTVTSSHVKESLLIMMQHNMVTATMPTERELRKAKANASRPANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGMVVDCFLRHGRRTLPEVKMEVLHRAEGLARIRQAQAATWEDEVEDT----EAEVTAGA---------IQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTASSGKXXXXXXXXXXXXXXXXXXRELEERQRKGAAQTAARKRR-------RIGDSSGSAGGADAPEASDEEDELPV-------EMRGMVSRVGAGSGSSGAGLD-----WRPPPSKRI----RQHEGXXXXEEGLADAPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFQEXXXXXXXKEDMAFGEWFGFGGGRRGGVGGSEATVLDSVVWRLGIDKFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERK--IKEQATPGMSARTLFDKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRY--------GKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQVNQLVTDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDSEKERLDQVRRSXXXXXXXXXXXXXXLMLF 718
            P PG  SS      L L++L E+ GP+V  +   ++R  R TLAE+ R      G   + + G          +KE+L+I++QHN++   MPT  E+ +     ++P    +YY +      +R R P F  +A   FG+     V+  +RHGR  L ++  +V     G +   +   AT  D  +      + E  +GA         ++   + +++  Y+ +V  LDLVT   SP+       + G A++ +        XXX        E E  +++G        +         IG S G+  G  AP  S    E PV         +    R G   G   AG+D     + P PSK++       EG      G  +  +                                 G           +E +A  EW G G               D V+WR+G+++FHRD R+ + L  V+ +   +T A  +V+ +L  S P ER   +    +  +S   L  ++    P N T ++        ++  + +D    V  +         Y V +  +++ +R R +   +R+RY        G   ARI  +LL  K+L+ QQV+E+AM+   + R RLYR+  D ++++QE+P+RAD +PN TF+LWT    QV + +T  +YK  LN+RLRR+      ++L  +    R  +D E    DQ+  +              LMLF
Sbjct:    5 PHPGGVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEIWRDSDNRNG--NLHKLGL---------IKEALVILLQHNLLVVAMPTSDEMLRKH---TKPL---IYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQV-----GESYKARYNIATVADHTQTLMGSGDGEAGSGATACADASVDVEDLVRKMILEHYLVRVLPLDLVTP--SPDALT----SVGAAAAARGSRAAASKXXXSAVLSKGAETEAGKKRGRQGGLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSG-GEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVG----------GEESLA--EWVGAG---------------DEVLWRVGVEQFHRDLRHVTCLRFVRQKV--NTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRVQL--PPNVTVKM--------YLEVLQND---PVQIVDREGTATDVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIR--DDVEAAHFDQLTTTLDRLDQALENLDATLMLF 689          
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: A0A5D6XL36_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL36_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.530e-36
Identity = 189/730 (25.89%), Postives = 308/730 (42.19%), Query Frame = 0
Query:   17 SRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLAELTRLVQRDQGIMGVSRAGKTRTTVTSSHVKESLLIMMQHNMVTATMPTERELRKAKANASRPANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGMVVDCFLRHGRRTLPEVKMEVLHRAEGLARIR-QAQAATWEDEVEDTEAEVTAGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTASSG----------KXXXXXXXXXXXXXXXXXXRELEERQRKGAAQTAARKRRRIGDSSGSAGGADAPEASDEEDELPVEMRGMVSRVGAGSGSSGAGLDWRPP-----PSKRIRQHEGXXXXEEGLADAPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFQEXXXXXXXKEDMAFGEWFGFGGGRRGGVGGSEATVLDSVVWRLGIDKFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFDKLYKAWPANKTKRLPD----WGNFMTWMGAICSDLTGMVSTI--------HGSDPQNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQVNQLVTDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDSEKERLDQVRRSXXXXXXXXXXXXXXLMLF 718
            S R  VLSVL +  G +   VA  L+R +   L ++   VQ    ++  S             +K +LL ++QHN++       R +  +       A   + Y +   EAL R R P F  QA   FG    +V++  L HGR  L +    + +    L R + +A+A   EDE+ D E + +   I+ +F ++   +YI +V  LDL      P     PS+  G  + G           XXXXXXXXXXXXXXXXXX   ++    G      +K+                +A+   + +PVE++ M+    A   +  A  ++ P       SK+ +  +       G A                                                 + D A             G+    A    ++VWR G D+  RD R+ + +    +    +T+A V+V  ML  S+P ER+  E  +  ++AR LF     A PA K+    D    W   + ++  +C D +GMV  +                +Y+V++  +V ++R       ++D++G  +ARI+ +L++ + LEQQ + E+A+LP  DAR RLY L  +R+V +QEVPKRAD NP  T + W++   ++ + V + +  ++  +R RRK     +KEL         +ND  K   D++ R+              LML+
Sbjct:   23 SEREAVLSVLRDDFGDVAEKVASALLRGDGLRLGDVVPRVQAAAPVVPPS----------VHEIKCALLKLLQHNVLLV-----RPVAGSSGGGGARAAPAVTYRVNVQEALYRLRFPTFLEQAKKSFGLEGEVVMEELLVHGRVRLDQSLDAMAYNLAELRRQQAEAEAPPDEDEISDAELDESRARIRATFVEMAKKRYISRVHPLDLKVPEPEPRPDFPPSIMRGNDAGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKPDDDGITVRGKKKK---------------AQAAAPSNAIPVELQLMLEADDARKRADAAEAEFEPELAAGRSSKKRKLTKRAKLPSRGAAGTS---------------------------------------------GESDDA---------DAPAGMAAGGALAEQALVWRFGADQLMRDLRHAACVRFATENI--NTVAGVIVAAMLQHSSPHEREKDEATSYPVTARELF-----AVPAVKSALPKDSKDTWRLLLNYITVMCRDKSGMVMKVAPETFDATQARAGDGGQYVVHMQKIVAFLRQATTHAYVQDKFGVPSARIVRLLVEKRQLEQQTIGELALLPSNDARRRLYELFAERLVKLQEVPKRADHNPAFTLYCWSVDVPRMERSVRERVEASLCKLRARRKLEAEQNKELIARSDQLVEANDVAK--FDKLSRALDRLDRAVLQLDAMLMLY 659          
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM)

HSP 1 Score: 153 bits (387), Expect = 1.210e-35
Identity = 95/302 (31.46%), Postives = 162/302 (53.64%), Query Frame = 0
Query:  428 GSEATVLD-SVVWRLGIDKFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFD--KLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTI--HGSDPQNPK------YMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQVNQLVTDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDSEKERLDQVRRSXXXXXXXXXXXXXXLMLF 718
            GS AT  + S+VWR G+ +  RD R+ + +    +    + +A V+V+ ML  S+P ER+  E  +  +SAR LF+   + KA P+        W   + ++  +C D +GMV  +     DP   +      Y+V++  +V++++    +  ++D+YG  +ARI+ +L++ + LEQ+ + E+A+LP  DAR RLY L  D+++ MQE+PKRAD NP  TFF W++   Q+   + + +  ++  +R RRKF    +KEL         +ND +K   D++ RS              LML+
Sbjct:  310 GSGATTDERSLVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVEAMLQHSSPREREKDEPTSFPVSARDLFEMESVKKALPSEANN---PWRLLLNYIMVMCRDKSGMVMKVSQEAFDPTQARSGDGGQYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIAERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK--FDKLSRSLDRLDRAIIHLDGMLMLY 604          
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP)

HSP 1 Score: 152 bits (385), Expect = 2.050e-35
Identity = 95/302 (31.46%), Postives = 157/302 (51.99%), Query Frame = 0
Query:  427 GGSEATVLDSVVWRLGIDKFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLFD--KLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTI--HGSDPQNPK------YMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQVNQLVTDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDSEKERLDQVRRSXXXXXXXXXXXXXXLMLF 718
            G    T   S+VWR G+ +  RD R+ + +    +    + +A V+V  ML  S+P ER+  E  +  +SAR LFD   + KA P         W   + ++  +C D +GMV  +     DP   +      Y+V++  +V++++       ++D+YG  +ARI+ +L++ + LEQ+ + E+A+LP  DAR RLY L  D+++ MQE+PKRAD NP  TFF W++   Q+   +T+ +  ++  +R RRKF    +KEL         +ND +K   D++ RS              LML+
Sbjct:  303 GSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVAAMLQHSSPREREKDEPTSFPVSARDLFDMESVKKALPPEANN---PWRLLLNYIMVMCRDKSGMVMKVAQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK--FDKLSRSLDRLDRAIIHLDGMLMLY 597          
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL)

HSP 1 Score: 152 bits (384), Expect = 4.110e-35
Identity = 93/297 (31.31%), Postives = 158/297 (53.20%), Query Frame = 0
Query:  432 TVLDSVVWRLGIDKFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLF--DKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTI--HGSDPQNPK------YMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQVNQLVTDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDSEKERLDQVRRSXXXXXXXXXXXXXXLMLF 718
            T   S+VWR G+ +  RD R+ + +    +    + +A V+V+ ML  S+P ER+  E  +  +SAR LF  + + KA P+        W   + ++  +C D +GM+  +     DP   +      Y+V++  +V++++   V   ++D+YG  +ARI+ +L++ + LEQ+ + E+A+LP  DAR RLY L  D++V +QE+PKRAD NP  TFF W++   Q+   +T+ +  ++  +R RRKF    +KEL         + D +K   D++ RS              LMLF
Sbjct:  349 TDETSLVWRFGMTQMLRDLRHKTCIRFASENI--NAVAGVIVEAMLQHSSPREREKDEATSAPVSARDLFNMESVKKALPSESNN---PWRLLLNYITVMCRDKSGMIMKVAQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEALDIDK--FDKLSRSLDRLDRAIIHLDGMLMLF 638          
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI)

HSP 1 Score: 151 bits (382), Expect = 9.320e-35
Identity = 95/302 (31.46%), Postives = 156/302 (51.66%), Query Frame = 0
Query:  427 GGSEATVLDSVVWRLGIDKFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLF--DKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTI--HGSDP------QNPKYMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQVNQLVTDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDSEKERLDQVRRSXXXXXXXXXXXXXXLMLF 718
            G    T   S+VWR G+ +  RD R+ + +    +    + +A V+V  ML  SAP ER+  E  +  +SAR LF  + +  A P         W   + ++  +C D +GMV  +     DP         +Y+V++  +V++++       ++D+YG  +ARI+ +L++ + LEQ+ + E+A+LP  DAR RLY L  D+++ MQE+PKRAD NP  TFF W++   Q+   VT+ +  ++  +R RRKF    +KEL         +ND +K   D++ RS              LML+
Sbjct:  372 GSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENI--NAVAGVIVTAMLQHSAPREREKDEPTSAPVSARDLFNMESVKNALPPEANN---PWRLLLNYIMVMCRDKSGMVMKVAQEAFDPIQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDK--FDKLSRSLDRLDRAIIHLDGMLMLY 666          
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.960e-34
Identity = 94/303 (31.02%), Postives = 158/303 (52.15%), Query Frame = 0
Query:  428 GSEATVLD--SVVWRLGIDKFHRDFRNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTLF--DKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTI--HGSDPQNPK------YMVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMAMLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQVNQLVTDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDSEKERLDQVRRSXXXXXXXXXXXXXXLMLF 718
            GS A  +D  S+VWR G+ +  RD R+ + +    +    + +A V+V  ML  SAP ER+  E  +  +SAR LF  + +  A P+        W   + ++  +C D +GMV  +     DP   +      Y+V++  +V++++       ++D++G  +ARI+ +L++ + LEQ+ + E+A+LP  DAR RLY L  +++V MQE+PKRAD NP  TFF W++    +   +T+ +  ++  +R RRKF    +KEL          ND +K   D++ RS              LML+
Sbjct:  353 GSSAVDMDERSLVWRFGVTQLLRDLRHKACIKFATENI--NAVAGVIVAAMLQHSAPREREKDEPISAPVSARDLFGMESVKNALPSESNN---PWRLLLNYIMVMCRDKSGMVMKVAQEAFDPSQARSGDGGQYVVHMQKIVEFLQQVTTHAYIQDKFGAASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEGNDLDK--FDKLSRSLDRLDRAIIHLDGMLMLY 648          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig693.18035.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS6_ECTSI1.240e-12969.66DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A6H5JM01_9PHAE2.110e-11153.32DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
D7FMS5_ECTSI4.490e-10368.56DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
W7U6Z3_9STRA1.540e-3825.33DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]
A0A5D6XL36_9STRA2.530e-3625.89DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
H3GD40_PHYRM1.210e-3531.46DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
G4Z0C0_PHYSP2.050e-3531.46DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
A0A0P1AWK6_PLAHL4.110e-3531.31DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A0W8C9C8_PHYNI9.320e-3531.46DNA-directed RNA polymerase III subunit RPC3 n=12 ... [more]
A0A3R7FY14_9STRA1.960e-3431.02DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 687..714
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 555..643
e-value: 8.4E-27
score: 94.9
IPR024550TFIIEalpha/SarR/Rpc3 HTH domainPFAMPF02002TFIIE_alphacoord: 564..658
e-value: 1.8E-5
score: 24.6
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 20..720
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 562..648

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig693contigF-serratus_M_contig693:285609..304377 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig693.18035.1mRNA_F-serratus_M_contig693.18035.1Fucus serratus malemRNAF-serratus_M_contig693 285175..310674 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig693.18035.1 ID=prot_F-serratus_M_contig693.18035.1|Name=mRNA_F-serratus_M_contig693.18035.1|organism=Fucus serratus male|type=polypeptide|length=722bp
MAFLLETQLPKPGLESSRRNLVLSVLEEYHGPIVATVAEVLMRTERTTLA
ELTRLVQRDQGIMGVSRAGKTRTTVTSSHVKESLLIMMQHNMVTATMPTE
RELRKAKANASRPANVRLYYTLQPLEALVRTRGPLFHYQATDKFGKVAGM
VVDCFLRHGRRTLPEVKMEVLHRAEGLARIRQAQAATWEDEVEDTEAEVT
AGAIQKSFQDLVMAKYIDKVPKLDLVTAAASPEKAKKPSMTFGTASSGKA
GAGRDGGKNANGKNSKSRELEERQRKGAAQTAARKRRRIGDSSGSAGGAD
APEASDEEDELPVEMRGMVSRVGAGSGSSGAGLDWRPPPSKRIRQHEGEG
GGEEGLADAPQSARSRGRGRGRSRGRGGHRGVVAKGKGQGLNMEGVFQEE
GEGENEKEDMAFGEWFGFGGGRRGGVGGSEATVLDSVVWRLGIDKFHRDF
RNNSLLGLVQDRFPRSTLAYVVVKVMLDDSAPTERKIKEQATPGMSARTL
FDKLYKAWPANKTKRLPDWGNFMTWMGAICSDLTGMVSTIHGSDPQNPKY
MVNIATMVQYIRSRLVKCTMRDRYGKETARIMEILLQNKFLEQQQVAEMA
MLPPGDARTRLYRLLRDRMVSMQEVPKRADRNPNATFFLWTIKHDQVNQL
VTDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNDSEKERLDQVRRS
LDRLDTALLRLDETLMLFDTL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR024550TFIIEa/SarR/Rpc3_HTH_dom
IPR039748RPC3
IPR036390WH_DNA-bd_sf