mRNA_F-serratus_M_contig693.18032.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig693.18032.1 vs. uniprot
Match: A0A6H5L7M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M4_9PHAE) HSP 1 Score: 217 bits (552), Expect = 1.420e-58 Identity = 139/328 (42.38%), Postives = 180/328 (54.88%), Query Frame = 1
Query: 580 CTSEQTQSALEASSAYVQCTEVDYETFMTLVHADVDVLQGASTCFAEKVQE-TEETAEPDEN----------GEVVIEVDEVFAECIQEVXXADDTKATAATADFLNKLIGSDSKICSCLPSFVEKTPDCDMWMRYRHFAMHLEDLCEAVDSAVENA-AMPGIVELEAA-NQTENQDKAFEAA-PQGNAK----------------GSNGVMDEHP-----YGPCPPGQETHPEDPTKCQTSENQETYFNEHESSGGRGPPPEGQGSIFGALMSVVGVVALAGVVGVGGLWAWGKFHGGARQPGVRYMAANVDNDIGTELGPFGREYA 1458
CT QTQ+AL+A++ YV+C +DY F LVHADV +L+ A+ CF K E EE PD+N E ++ F EC++E A+D +A+ AT FL K++ +S IC+CLP F+ K P C W+RY ++++C+ +D A I E++ + ++QD A A P + K G P +GPCPPGQE HP DP CQ S N E Y E E GR EG G I L SV+GVVA+ GV VGGLWAWGKF G RQPGVRYMA +DN+IGTELGPFGR+YA
Sbjct: 91 CTQTQTQAALKATANYVKCAFLDYADFQALVHADVSILEDAAACFKTKADEIAEEIPPPDDNMSEDEVKALEKETAEKLATAFQECVKEAE-AEDEEASQATVQFLEKMLAEESTICACLPPFLIKMPSCGPWIRYHDVGEIVQNVCDFIDDGNNTVVADMDIAEVDVTPEERDSQDNATVAVLPAEDTKKLEXXXXXXXXXXXEAGIXXXXXRRPRLPNTFGPCPPGQEVHPSDPKACQPSLNSEEYQGE-EFGDGRDSRREGGGMISLGL-SVIGVVAVGGVXXVGGLWAWGKFQSGTRQPGVRYMATGLDNNIGTELGPFGRQYA 415
BLAST of mRNA_F-serratus_M_contig693.18032.1 vs. uniprot
Match: D8LR88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR88_ECTSI) HSP 1 Score: 194 bits (493), Expect = 1.100e-50 Identity = 129/316 (40.82%), Postives = 164/316 (51.90%), Query Frame = 1
Query: 580 CTSEQTQSALEASSAYVQCTEVDYETFMTLVHADVDVLQGASTCFAEKVQE-TEETAEPDEN----------GEVVIEVDEVFAECIQEVXXADDTKATAATADFLNKLIGSDSKICSCLPSFVEKTPDCDMWMRYRHFAMHLEDLCEA-VDSAVENA-----AMPGIVELEAANQTENQDKAFEAAPQGNAKGSNGVMDEHP------YGPCPPGQETHPEDPTKCQTSENQETYFNEHESSGGRGPPPEGQGSIFGALMSVVGVVALAGVVGVGGLWAWGKFHGGARQPGVRYMAANVDNDIGTELGPFGREYA 1458
CT QTQ+AL+A++ YV+C +DY F LVHADV +L+ A+ CF K E EE PD+N E ++ F EC++E A D +A+ AT FL KL+ +S IC+CL F+ K P C W+RY ++++ A VD E A+ ++ E + EHP +GPCPPGQE HP DP CQ S N E Y E E GR EG G I L SV+GVVA+ WAWGKF G RQPGVRYMA +DN+IGTELGPFGR+YA
Sbjct: 91 CTQTQTQAALKATANYVKCAFLDYADFQALVHADVAILEDAAACFKTKADEIAEEIPPPDDNMSEEEVKALEQETAEKLATAFQECVKEAE-AGDEEASQATVQFLEKLLAEESTICACLSPFLIKMPTCGPWIRYHDVGKIVQNVLVAEVDLTPEEKDSQDDAIVAVLPAENTKKLXXXXXXXXXXXXXXXXXXXXXXXEHPAHLPNAFGPCPPGQEAHPSDPKACQPSMNSEEYQGE-EFGDGRDGRREGGGMISLGL-SVMGVVAVGXXXXXXXXWAWGKFQSGTRQPGVRYMATGLDNNIGTELGPFGRQYA 403 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig693.18032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig693.18032.1 >prot_F-serratus_M_contig693.18032.1 ID=prot_F-serratus_M_contig693.18032.1|Name=mRNA_F-serratus_M_contig693.18032.1|organism=Fucus serratus male|type=polypeptide|length=429bp MLGSRGNKSPRARRVWILVAALIVAVACGQSGDSEGQGGPPDHSGGPPGHback to top mRNA from alignment at F-serratus_M_contig693:116052..136783- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig693.18032.1 ID=mRNA_F-serratus_M_contig693.18032.1|Name=mRNA_F-serratus_M_contig693.18032.1|organism=Fucus serratus male|type=mRNA|length=20732bp|location=Sequence derived from alignment at F-serratus_M_contig693:116052..136783- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig693:116052..136783- >mRNA_F-serratus_M_contig693.18032.1 ID=mRNA_F-serratus_M_contig693.18032.1|Name=mRNA_F-serratus_M_contig693.18032.1|organism=Fucus serratus male|type=CDS|length=2574bp|location=Sequence derived from alignment at F-serratus_M_contig693:116052..136783- (Fucus serratus male)back to top |