mRNA_F-serratus_M_contig6927.18030.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6927.18030.1
Unique NamemRNA_F-serratus_M_contig6927.18030.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 2.980e-108
Identity = 166/246 (67.48%), Postives = 201/246 (81.71%), Query Frame = 1 
Query:  142 RWASSTGFNGRLYMEDGGCATMTDLYESR-VESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEYESDETCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDP 876
            R+A+S+G  GRLY E  GC TMTDLY  R  E+DG + KGP+Y+LDDD   +  P+ +T  WLL ++L++  G +FYC+GTS GGDC++LRIQSTGS DF+E+RGHGGSLYFE T+VTSWDT NK PQE YE+GRSFLNCVSE  + + CEG  +N+ GECRMDII+SE+ YLG+FDSESYG+TWKVRG+C D SNPEVF+ TNVYGD+T S+IHH+YYG YSYGHQGGVWTNN MHDN QYGFDP
Sbjct:  431 RYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDP 675
[Close]
BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 2.320e-107
Identity = 161/231 (69.70%), Postives = 190/231 (82.25%), Query Frame = 1 
Query:  184 EDGGCATMTDLYESRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEYESDETCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDP 876
            E  GC T+TDLY  R+ESDG + KGPI+ LDD    + +P  ++ KWLLT++L +  G++FYCRG+SIGGDCDELRIQSTG +DF+E+R HGGS+YFEST+VTSWDT NKTPQ  Y  GRSFLNCVSE  + E C GQ QN+ GECRMDII+SE+GYLG+FDSESYGLTWKVRG+C D SNP+VFDTTNVYG++  S+IHH YYG YSYGHQGGVW NN MHDNHQYGFDP
Sbjct:   83 EGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDP 312
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BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 1.030e-103
Identity = 153/203 (75.37%), Postives = 174/203 (85.71%), Query Frame = 1 
Query:  268 ILDDDDEIMYSPTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEYESDETCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDP 876
            +LDD    + SPTSVT KWLL S+L+V  G+IFYC G+  GGDCDELRIQSTG  D+YE+RGHGGS+YF  T+VTSWDT NK PQE YE GRSFLNCVSE  + ETC+G+ +ND GECRMDII+SEMGY+G+FD+ESYGLTWKVRG+C D SNP+VF+TTNVYGDI NSNIHHMYYGMYSYGHQGGVWTNN MHDNHQYGFDP
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDP 203
[Close]
BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 335 bits (859), Expect = 5.730e-103
Identity = 161/237 (67.93%), Postives = 187/237 (78.90%), Query Frame = 1 
Query:  184 EDGGCATMTDLYESR-VESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEYESDETCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQY 864
            E  GC T+TDLY  R  E+DG + KGP+Y+LD     + +PTSVT KWLL ++L+V  G+IFYC G+  GGDCDELRIQSTG  D+YE+RGHGGS+YF  T+VTSWDT NK PQE YE GRSFLNCVSE  + ETC+G  +ND GECRMDII+SEMGY+G+FDSESYGLTWKVR         G+C D SNP+VF+TTNVYGDI NS+IHHMYYG YSYGHQGGVWTNN MHDNHQY
Sbjct:   18 ESEGCFTLTDLYNFRGTENDG-SSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY 253
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BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 2.920e-102
Identity = 154/233 (66.09%), Postives = 183/233 (78.54%), Query Frame = 1 
Query:  205 MTDLYESR-VESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEYESDETCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDP 876
            MTDLY  R  E DG + KGP+Y+LDDD   +  P+ +T  WLL ++L++  G +FYC+GTS GGDC++LRIQSTGS DF+E+RGHGGSLYFE T+VTSWDT NK PQE YE GRSFLNCVSE  + + CEG  +N+ GECRMDII+SE+ YLG+FDSESYG+TWK        VRG+C D SNPEVFD TNVYGD+  S+IHH+YYG YSYGHQGGVWTNN MHDN QYGFDP
Sbjct:    1 MTDLYNFRGTEKDG-SSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDP 232
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BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 6.470e-98
Identity = 146/232 (62.93%), Postives = 182/232 (78.45%), Query Frame = 1 
Query:  184 EDGGCATMTDLYESRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEY-ESDETCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDP 876
            + GGC T++DLY  +   +    KGP+++LD +D +  + T+ TGKWLLT+DLFV  G+  YCRG  +GG+C ELRI+ST  SDF+E+RGHGG+LYFE T+VTSWD   + PQE Y+DGRSF+ CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRG+C+D SNP+VFD  NVYGD+  S+IHHMYYGMYS+GHQGGVWTNNLMHDNHQYGFDP
Sbjct:    7 DGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDP 235
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BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 6.730e-75
Identity = 136/255 (53.33%), Postives = 168/255 (65.88%), Query Frame = 1 
Query:  139 MRWASSTGFNGRLYMED-------GGCATMTDLYESRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEY--ESDETCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDP 876
            +R+A ST    RLY+E        GGC T+  ++ESR        KGP+Y +D D   +   TS TG WLLT +L+V  G      G+  GGD DELR+ ST  + F  LR HGGSL F ST V SWDTS  +P ED  DGRS+++ +SE   + DETCEG  +N  GE RMDI  SE+GYLG++DSESYGLTWKVRG+C D SNPEVFD  NVYG++ +S+IHHM +G+Y+YGHQ G W  N MHDN  YGFDP
Sbjct:   46 IRYAESTA---RLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDP 288
[Close]
BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 5.590e-74
Identity = 140/257 (54.47%), Postives = 174/257 (67.70%), Query Frame = 1 
Query:  124 GTISDMRWAS-STGFNGRLYMEDGGCATMTDLYESRVESDGWTPKGPIYILDDDDEIMYS---PTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEYESDE--TCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDP 876
            GTI+ +  +S S+ F+G      GGCAT+TD+Y ++  S      GP+Y+LD  + I+       S TG WLLTS L +  G   Y  GTS GGD D LRIQST   DF+E+RG GGSL F  T VTSWDT     + +YE GRSF+NCV++++  +  +C G+   + GECRMDIIDS MG +GWFD+ESYGLTWKVRG C+D SN E+ D  NVYGDI  S I+ MYYGMYSYGHQGGVWT+N+M DN  YGFDP
Sbjct:  396 GTIASISTSSDSSSFSG------GGCATLTDMYNTQSGS------GPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDP 639
[Close]
BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 2.320e-73
Identity = 133/248 (53.63%), Postives = 163/248 (65.73%), Query Frame = 1 
Query:  160 GFNGRLYMED-------GGCATMTDLYESRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEY--ESDETCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDP 876
            G   RLY+E        GGC T+  ++ESR        KGP+Y +D D   +   TS TG WLLT +L+V  G      G+  GGD DELR+ ST  + F  LR HGGSL F ST V SWDTS  +P ED  DGRS+++ +SE   + DETCEG  +N  GE RMDI  SE+GYLG++DSESYGLTWKVRG+C D SNPEVFD  NVYG++ +S+IHHM +G+Y+YGHQ G W  N MHDN  YGFDP
Sbjct:   50 GTTARLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDP 288
[Close]
BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.370e-72
Identity = 129/238 (54.20%), Postives = 164/238 (68.91%), Query Frame = 1 
Query:  169 GRLYMEDGGCATMTDLYESRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKWLLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYFESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEYESD--ETCEGQPQNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGYCADGSNPEVFDTTNVYGDITNSNIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDP 876
            G+ Y+  GGCAT+TD+Y ++    G    GP+++LD +D ++    S TG WLL  D+ V  GS+    G   GGD   LRIQSTGS D+YE+RGHGGSL F  T VTSWDT  K    +Y+  RSF+ CVSE  +D  +TC+G   N  GECRMDII SEMG +G+  +ESYG++WKVRGYC++  NPEVF+ T V GDI +S+I+ MYYG YS+GH GG+WT N MHDN QYGFDP
Sbjct:  398 GKNYIRGGGCATLTDIYTAQG---GHNDDGPLFVLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDP 630
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6927.18030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC73_ECTSI2.980e-10867.48Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D8LRM4_ECTSI2.320e-10769.70Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FIU4_ECTSI1.030e-10375.37Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JGU8_9PHAE5.730e-10367.93MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KWQ2_9PHAE2.920e-10266.09MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FRR8_ECTSI6.470e-9862.93Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI6.730e-7553.33Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FWE8_ECTSI5.590e-7454.47Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G339_ECTSI2.320e-7353.63Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE1.370e-7254.20MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6927contigF-serratus_M_contig6927:15429..19936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.2
Seed ortholog evalue3.4e-98
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons7
Model size2469
Cds size1017
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932117.1934016-UTR-F-serratus_M_contig6927:15428..154521622932117.1934016-UTR-F-serratus_M_contig6927:15428..15452Fucus serratus maleUTRF-serratus_M_contig6927 15429..15452 +
1690964155.6548846-UTR-F-serratus_M_contig6927:15428..154521690964155.6548846-UTR-F-serratus_M_contig6927:15428..15452Fucus serratus maleUTRF-serratus_M_contig6927 15429..15452 +
1622932117.2799518-UTR-F-serratus_M_contig6927:17669..176831622932117.2799518-UTR-F-serratus_M_contig6927:17669..17683Fucus serratus maleUTRF-serratus_M_contig6927 17670..17683 +
1690964155.7333262-UTR-F-serratus_M_contig6927:17669..176831690964155.7333262-UTR-F-serratus_M_contig6927:17669..17683Fucus serratus maleUTRF-serratus_M_contig6927 17670..17683 +
1622932117.2963252-UTR-F-serratus_M_contig6927:17945..181101622932117.2963252-UTR-F-serratus_M_contig6927:17945..18110Fucus serratus maleUTRF-serratus_M_contig6927 17946..18110 +
1690964155.7520409-UTR-F-serratus_M_contig6927:17945..181101690964155.7520409-UTR-F-serratus_M_contig6927:17945..18110Fucus serratus maleUTRF-serratus_M_contig6927 17946..18110 +
1622932117.3161104-UTR-F-serratus_M_contig6927:18329..184731622932117.3161104-UTR-F-serratus_M_contig6927:18329..18473Fucus serratus maleUTRF-serratus_M_contig6927 18330..18473 +
1690964155.7622254-UTR-F-serratus_M_contig6927:18329..184731690964155.7622254-UTR-F-serratus_M_contig6927:18329..18473Fucus serratus maleUTRF-serratus_M_contig6927 18330..18473 +
1622932117.3336294-UTR-F-serratus_M_contig6927:18831..199361622932117.3336294-UTR-F-serratus_M_contig6927:18831..19936Fucus serratus maleUTRF-serratus_M_contig6927 18832..19936 +
1690964155.7753866-UTR-F-serratus_M_contig6927:18831..199361690964155.7753866-UTR-F-serratus_M_contig6927:18831..19936Fucus serratus maleUTRF-serratus_M_contig6927 18832..19936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932117.2101147-CDS-F-serratus_M_contig6927:15452..155241622932117.2101147-CDS-F-serratus_M_contig6927:15452..15524Fucus serratus maleCDSF-serratus_M_contig6927 15453..15524 +
1690964155.672321-CDS-F-serratus_M_contig6927:15452..155241690964155.672321-CDS-F-serratus_M_contig6927:15452..15524Fucus serratus maleCDSF-serratus_M_contig6927 15453..15524 +
1622932117.2250948-CDS-F-serratus_M_contig6927:16110..161921622932117.2250948-CDS-F-serratus_M_contig6927:16110..16192Fucus serratus maleCDSF-serratus_M_contig6927 16111..16192 +
1690964155.6887584-CDS-F-serratus_M_contig6927:16110..161921690964155.6887584-CDS-F-serratus_M_contig6927:16110..16192Fucus serratus maleCDSF-serratus_M_contig6927 16111..16192 +
1622932117.2369092-CDS-F-serratus_M_contig6927:16597..172381622932117.2369092-CDS-F-serratus_M_contig6927:16597..17238Fucus serratus maleCDSF-serratus_M_contig6927 16598..17238 +
1690964155.704004-CDS-F-serratus_M_contig6927:16597..172381690964155.704004-CDS-F-serratus_M_contig6927:16597..17238Fucus serratus maleCDSF-serratus_M_contig6927 16598..17238 +
1622932117.2607644-CDS-F-serratus_M_contig6927:17447..176691622932117.2607644-CDS-F-serratus_M_contig6927:17447..17669Fucus serratus maleCDSF-serratus_M_contig6927 17448..17669 +
1690964155.716249-CDS-F-serratus_M_contig6927:17447..176691690964155.716249-CDS-F-serratus_M_contig6927:17447..17669Fucus serratus maleCDSF-serratus_M_contig6927 17448..17669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6927.18030.1prot_F-serratus_M_contig6927.18030.1Fucus serratus malepolypeptideF-serratus_M_contig6927 15453..17669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6927.18030.1

>prot_F-serratus_M_contig6927.18030.1 ID=prot_F-serratus_M_contig6927.18030.1|Name=mRNA_F-serratus_M_contig6927.18030.1|organism=Fucus serratus male|type=polypeptide|length=339bp
MVRGSSLALFSILAARGSSSSSDDTMTIADECTGTISDMRWASSTGFNGR
LYMEDGGCATMTDLYESRVESDGWTPKGPIYILDDDDEIMYSPTSVTGKW
LLTSDLFVRTGSIFYCRGTSIGGDCDELRIQSTGSSDFYELRGHGGSLYF
ESTLVTSWDTSNKTPQEDYEDGRSFLNCVSEYESDETCEGQPQNDYGECR
MDIIDSEMGYLGWFDSESYGLTWKVRGYCADGSNPEVFDTTNVYGDITNS
NIHHMYYGMYSYGHQGGVWTNNLMHDNHQYGFDPTMTRTTSLSPITKSMT
TLIMASSRPSAATTSKYTKTRSTTVVLRLRNLPPSQLG*
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mRNA from alignment at F-serratus_M_contig6927:15429..19936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6927.18030.1 ID=mRNA_F-serratus_M_contig6927.18030.1|Name=mRNA_F-serratus_M_contig6927.18030.1|organism=Fucus serratus male|type=mRNA|length=4508bp|location=Sequence derived from alignment at F-serratus_M_contig6927:15429..19936+ (Fucus serratus male)
CAGGTTTCAAAACAGAAAATATCCATGGTTCGCGGTTCTTCCTTAGCTCT
GTTCTCCATACTGGCCGCTCGTGGGTCGTCGAGCTCCTCAGATGATGTGA
GTCAACGAATCTGCCAAGCGGCGTCTACTTGGCGTACTCGTTAAGGAAAT
GCACATCATAATATCGACTGTTCGTCGGCTCGATCGAAACTAAAAGGGTC
AATAAGGGTGTTCCGTCGGAGACTTACGATACTCGGCTCGTGCAGACTCC
CGATAACGAAGTCGAGGGGAGAGCAAAAAACGGGGGAAGGGTTAAAAAGG
AACTGCGGAGCTTTTTTTGTCGTCTAATGGGAGGTTACTGAGACAAACAC
AGTCGTCGTTGATCCCCATATGAGAGGACTAGTCTCAGTTGAAATGAACT
AGGTCCAGATGGCGTAGTTATGTGCATTTAAAAAAATACACGAGAACTTT
AGTTGAAAGAAAAGTACGTCAAGCTTCCTGTGTGGTGCGTGTATCGCCTC
ACTTTGCACCATCGACTCTATAACGTATGTATCCCATTCTTCCTGCCATG
TTTAGTTGTCGGTTGATCCGTTTCTCTTCTGAACTACTGTTAGCCACAAA
TCGTTACGGGTGAGTGGAAGAGTCCCTTAATACCCAGTCACGCGCCCAGC
GAATGCCCATGCCCGTGCCATCACCACTTCAGACCATGACTATCGCAGAT
GAATGTACTGGTACCATATCCGATATGCGCTGGGCGTCCAGCACAGGATT
CAACGGCCGCTTGTGTGAGTACCGACGGGGTCTCCACGACTTCGTGTCCA
CTGAACTCTTTGATAACCCGTTAGACGTATGATGATTGATATCGCGTTGA
CTTGACCTAGGGGTCCTTTAGAAAGATAAAAATAGAGAGAACGTCAGTGT
TTGAAAAATGTAGTTTTGTCCTCCGAAGCTCGTCTTCAAGATAGGCATTT
TAGTTGCTACAAGATTCAGGTAAAACTCACTTCTCGCGCCTCGCATCGCC
ATGTGGCCAGTCGAAAATTCCCTCGAATTAGTGCGCGAACAGGATCACGC
CGATAGAGCCGAATATGGTCTCAACTTTGCTACGTGGTTAATCGCCTTAA
GCAAGATCGTATACCGCTATTTATTCTGTTTTTCCACGTATCACCTTTTT
ATGTTTGCCACTGCTTCAGACATGGAGGATGGTGGCTGTGCTACCATGAC
CGACCTCTACGAGAGTCGCGTGGAGAGCGATGGCTGGACCCCAAAGGGTC
CCATCTACATCCTCGACGACGACGATGAAATCATGTACAGCCCCACTAGC
GTGACAGGCAAGTGGCTTCTCACGTCCGACCTGTTCGTCCGCACAGGGTC
CATCTTCTACTGCCGCGGCACCAGCATAGGCGGTGACTGCGATGAGTTGC
GAATCCAGTCCACCGGCTCATCGGACTTCTACGAGTTACGAGGCCACGGT
GGCAGCCTGTACTTCGAGAGCACGCTTGTCACCTCGTGGGACACCTCAAA
TAAAACACCGCAAGAGGATTATGAGGACGGCCGCTCGTTCCTCAACTGCG
TGTCCGAGTACGAGTCGGACGAAACGTGTGAAGGCCAGCCTCAAAATGAC
TACGGAGAGTGCCGTATGGATATAATCGACTCCGAGATGGGCTACCTGGG
ATGGTTCGACTCAGAGTCCTACGGTCTAACCTGGAAAGTTCGCGGGTATT
GTGCCGACGGGAGCAATCCGGAGGTGTTCGACACAACGAACGTGTATGGG
GACATCACGAATTCCAACATTCATCACATGTACTACGGCATGTACTCCTA
CGGCCACCAGGTATCATGTCGACATGCAATGATCCCGTCGATGTACTTGT
TTTAATCCCCCTAGTATGCGGTGCCTCCTTCAAATAAATTTCACCTCGAT
CCCTCGCACGTAACTGAATTTATTTGTGTGTGCGTGACCCAGCCACTCGC
GCATCAAACTGGTTATGTATATGCCTCTGATGCTGCACTGTCATGCCTTA
CAATATTCGGACGCTGCAGGGTGGTGTGTGGACGAATAATTTGATGCACG
ACAACCACCAGTACGGGTTTGACCCCACGATGACTCGGACTACATCACTA
TCGCCAATAACGAAGTCTATGACAACGTTAATCATGGCATCATCGCGTCC
AAGCGCTGCAACAACCTCAAAATATACGAAAACGAGGTCTACGACGGTGG
TGCTCAGGCTGCGGAATCTTCCTCCATCGCAGCTCGGATAACTGCGAGAT
TTACGGTTCGTTGATGTCGAATCATGCGGCTTTGCTCACTCGATTTGCGT
GTCGTCTACGTTTAGAGGCAAAGTGGCAGTTATTTGCAACACGCGATCCT
TACGCCATTGATCGACAATCCATGGGGGGATTCCGTTAGTCCGAGAAATG
CGTTGAGTTTCAGGAACTTAAACTTTTCATTTTTGCGAGCATTCGTACTC
TGCTGCTCAATCATTCGTGGTCTCTCTCTCTACCTACGAAACCGTCTTAT
CCCCTTCTACGTGGCAGACAACGTGGTATATGACATGCAGGACGCAGGTC
TTGCCATCCTGGAATCTTTCGACGCTGATATCCACGACAACACCTTCACG
AACGTCAAGTACGGTATCCGTATTAGCCTGGGCGGAGGGAACAACAATGT
GTACGACAATGTGTTCGACCAATGCTCCCAGTGTGAGTGAGTAGTATATT
CGTAAAATAGCAGTATACCATGCTTTCCTTAAGTCGAGTTACCCGCCAAT
AGCAAGAGCACGAGCATTTGGACTCTAGTTACGATTATACCTCGCTTGTT
TTCCAAACATTTCCAAATTCCACCCTTTTCTCTTGGTGCTCGTCCCCCGT
CCTCTGGGTCGGCCAATTCTTGCATTTCACATCGGATGGGACTATTCACA
GACGGGCTGTACACCTATCAAGGTTCCGACGAGCCCGAAGCATCTTCTGA
CGGCCGACCCAGCGATAACAGCTTCTACGACAACACCATCTCCAATACCG
AGACGGGCATGAAGATCAAAGAAGCTGACGACACCGTCATCACTGGTGAC
GAAAAACACATAATGCAAAAGAGAAGGAACACCATAGATCCGCTCTTTTT
ACTCGCTACCTGCCAGTCTGTGCATTGTAAAGCATATATTAGTTACCCAG
TGTGTTATGCAATCGAAGAACATAAGAACAGCTAAGTCTGAGTTTTTTTT
TCTCCTAGTTTCGGATCAAGCGTTGCATGAGTGCTCAGTGATGGTAAAAC
CTACCCTGGTAGGGTATTCTTGTGGCTTACGTCGTGAAGCTGAGGCAAAG
TAGTCGTTTGATTAAAGAAGTCATTCTCCCGACTATCGCCACCACCGTAG
CTTTCCACTGGTCAGGCGCTTGACTTGGGCTCGTCATTTGTTGTTTTGTG
CAGGCAATACCTTCACGGGGACTTCCGTTCTCGAGTTCAGCGACGCTCAA
GACACAGTGTGGTCGAGCAACACCTTCGAGGACGCTGATTCCGATCTCTG
CTACAAGAACAGCGATAGTAGTACCTTCGCTTCTGCCGACGACACGCTTC
CTTCTCTGTGCTAACCTGACCATCTGCGGCGCACAATCTGCGATTTTGTC
TCAAAGGGAAAGAATGGCCTGCGTATGTATCTGGCACTGCTTGCAGAGTG
TACACCTCTATATATTAGGCTTCTTTCTCAAGAGATGGCGCTCGGACACT
AGTGAACATGTATTGGCATTAAATCGGTAACTTCGGCTTCAAGATCTCAT
GTATGTGCTGAAATACAAACAACGAGCTGAAGGGCGACAATTCAGTGCAG
TCACCTTATTGGTCATTGATGCCTGTGTGGGCTATGAGAAGGACAACTAC
CTTCGGAGCTGACATGTTGTTGATATTTCGCTTGAATCGATCTAATGTAA
TTAGCTGTTATTCGTGGGGACTACACGCTCTCTTTGTACGAGAAGTAGAC
GTTAAGGGCGGGGAATAAGAGTATGCGTGTTGAGTGAAAAGTGCCAAGAG
TGACGGTGTGTTGCTGGCCTTCTCCTTATGGCGAACCCTTATACCTCTTT
GTGGTGTCAAAATACCGTCTTGGTGGCTAGAAGAATCCCTCGGCCCCCGT
TGTTGTCGGCCCGATTTACGTGCGGTACATGGGCTTGCAGATCTCTTTTC
CTACCACGAGGGTACATTGCATTGTTCGTCCTATATATGGGTGAGGGCTA
AAACGTTTGAAGAGCTTGAACGGTTTTCGGCAGCGTCTAGAATCGGGAGG
GTGTTTGCAAAACAACGCGTTAAAGAAGCAAATTCATGTGTAAATTTCCC
TCAATCCAAGGTAATTTGCCGGATGGCGAGGTTCGTGGCTTTCGTCTATC
TGTAGAACTGGTCGGGGAAGAGTCGTGGGTAAACCTTCTCTTCAAGGAGA
AAGCTCTTCGTGCTCTTATGAACGAAGCCGATTTGGAAATGCGGATAGAT
TAAGAGACTATTCTGTCCACTAGGGTGCTGTGATAGTTAGAGTAGTTTCG
ATCTACGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6927:15429..19936+

>mRNA_F-serratus_M_contig6927.18030.1 ID=mRNA_F-serratus_M_contig6927.18030.1|Name=mRNA_F-serratus_M_contig6927.18030.1|organism=Fucus serratus male|type=CDS|length=2034bp|location=Sequence derived from alignment at F-serratus_M_contig6927:15429..19936+ (Fucus serratus male)
ATGGTTCGCGGTTCTTCCTTAGCTCTGTTCTCCATACTGGCCGCTCGTGG
GTCGTCGAGCTCCTCAGATGATATGGTTCGCGGTTCTTCCTTAGCTCTGT
TCTCCATACTGGCCGCTCGTGGGTCGTCGAGCTCCTCAGATGATACCATG
ACTATCGCAGATGAATGTACTGGTACCATATCCGATATGCGCTGGGCGTC
CAGCACAGGATTCAACGGCCGCTTGTACCATGACTATCGCAGATGAATGT
ACTGGTACCATATCCGATATGCGCTGGGCGTCCAGCACAGGATTCAACGG
CCGCTTGTACATGGAGGATGGTGGCTGTGCTACCATGACCGACCTCTACG
AGAGTCGCGTGGAGAGCGATGGCTGGACCCCAAAGGGTCCCATCTACATC
CTCGACGACGACGATGAAATCATGTACAGCCCCACTAGCGTGACAGGCAA
GTGGCTTCTCACGTCCGACCTGTTCGTCCGCACAGGGTCCATCTTCTACT
GCCGCGGCACCAGCATAGGCGGTGACTGCGATGAGTTGCGAATCCAGTCC
ACCGGCTCATCGGACTTCTACGAGTTACGAGGCCACGGTGGCAGCCTGTA
CTTCGAGAGCACGCTTGTCACCTCGTGGGACACCTCAAATAAAACACCGC
AAGAGGATTATGAGGACGGCCGCTCGTTCCTCAACTGCGTGTCCGAGTAC
GAGTCGGACGAAACGTGTGAAGGCCAGCCTCAAAATGACTACGGAGAGTG
CCGTATGGATATAATCGACTCCGAGATGGGCTACCTGGGATGGTTCGACT
CAGAGTCCTACGGTCTAACCTGGAAAGTTCGCGGGTATTGTGCCGACGGG
AGCAATCCGGAGGTGTTCGACACAACGAACGTGTATGGGGACATCACGAA
TTCCAACATTCATCACATGTACTACGGCATGTACTCCTACGGCCACCAGA
CATGGAGGATGGTGGCTGTGCTACCATGACCGACCTCTACGAGAGTCGCG
TGGAGAGCGATGGCTGGACCCCAAAGGGTCCCATCTACATCCTCGACGAC
GACGATGAAATCATGTACAGCCCCACTAGCGTGACAGGCAAGTGGCTTCT
CACGTCCGACCTGTTCGTCCGCACAGGGTCCATCTTCTACTGCCGCGGCA
CCAGCATAGGCGGTGACTGCGATGAGTTGCGAATCCAGTCCACCGGCTCA
TCGGACTTCTACGAGTTACGAGGCCACGGTGGCAGCCTGTACTTCGAGAG
CACGCTTGTCACCTCGTGGGACACCTCAAATAAAACACCGCAAGAGGATT
ATGAGGACGGCCGCTCGTTCCTCAACTGCGTGTCCGAGTACGAGTCGGAC
GAAACGTGTGAAGGCCAGCCTCAAAATGACTACGGAGAGTGCCGTATGGA
TATAATCGACTCCGAGATGGGCTACCTGGGATGGTTCGACTCAGAGTCCT
ACGGTCTAACCTGGAAAGTTCGCGGGTATTGTGCCGACGGGAGCAATCCG
GAGGTGTTCGACACAACGAACGTGTATGGGGACATCACGAATTCCAACAT
TCATCACATGTACTACGGCATGTACTCCTACGGCCACCAGGGTGGTGTGT
GGACGAATAATTTGATGCACGACAACCACCAGTACGGGTTTGACCCCACG
ATGACTCGGACTACATCACTATCGCCAATAACGAAGTCTATGACAACGTT
AATCATGGCATCATCGCGTCCAAGCGCTGCAACAACCTCAAAATATACGA
AAACGAGGTCTACGACGGTGGTGCTCAGGCTGCGGAATCTTCCTCCATCG
CAGCTCGGATAAGGTGGTGTGTGGACGAATAATTTGATGCACGACAACCA
CCAGTACGGGTTTGACCCCACGATGACTCGGACTACATCACTATCGCCAA
TAACGAAGTCTATGACAACGTTAATCATGGCATCATCGCGTCCAAGCGCT
GCAACAACCTCAAAATATACGAAAACGAGGTCTACGACGGTGGTGCTCAG
GCTGCGGAATCTTCCTCCATCGCAGCTCGGATAA
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