prot_F-serratus_M_contig692.18013.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig692.18013.1
Unique Nameprot_F-serratus_M_contig692.18013.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length172
Homology
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: D7FTY7_ECTSI (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY7_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 8.350e-64
Identity = 102/149 (68.46%), Postives = 119/149 (79.87%), Query Frame = 0
Query:    1 MSTTSRTFSKFLRPIVNVPARRLHSSAPRAFSSSGGVSTLHADSGKLGTKLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSYRGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWRAPQKK 149
            MS + +  S  LRP+V    RRLHSS P+  S+ G  S L+AD GKLGTKLYH+VN+V+LAG+PAAVATSPSALTMPLD+VLG+A+PLH HIGMNYVISDYVPKS RG  R   LAAS++A  GLLKLN +GAGLTETLKATWR P+ K
Sbjct:    1 MSASLQRSSALLRPVVTAHVRRLHSSVPKTSSAPGSASVLNADDGKLGTKLYHAVNMVVLAGVPAAVATSPSALTMPLDIVLGIAMPLHAHIGMNYVISDYVPKSARGGARGAMLAASVLATLGLLKLNLTGAGLTETLKATWRGPKPK 149          
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: W7TCL8_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCL8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.420e-32
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 0
Query:   38 STLHADSGKLGTKLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSYRGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWRAPQK 148
            S + ADSG +GTK YH  N  +L   P A+  SPS LT PLD+ LG+A P+HGHIG+NY+ISDYVP++ R   R + L A+ +   GLLKLN SG GLTET K+ WRA +K
Sbjct:   52 SLVEADSGAVGTKFYHLSNTALLVAAPLALFLSPSPLTFPLDLFLGVAFPVHGHIGINYIISDYVPRASRPLARYVLLGATTVTVLGLLKLNLSGPGLTETYKSLWRAEKK 162          
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: A0A7S2WU59_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU59_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.470e-28
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 0
Query:   10 KFLRPIVNVPARRLHSSAPRAFSSSGGVSTLHADSGKLGTKLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSY----RGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWR 144
            + ++    V AR    +A RA +    ++ L AD G + TKLYH++N+ +L   P A    PS +T PLD+ LG+ +PLHGHIGMNYVI+DYVPK +    RGP R + L  + +  AGL  LN +G G+T T+K  W+
Sbjct:    6 RIMQAAARVAARH---AARRAAAPVRRMNFLAADEGAMSTKLYHNLNMGLLVVTPPAFLFGPSYVTFPLDLALGVMMPLHGHIGMNYVITDYVPKFFGKAARGPARVIMLGVTGVTMAGLTHLNLTGKGITATIKGLWQ 141          
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: A0A6G0X8T0_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8T0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.000e-27
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 0
Query:   18 VPARRLHSSAPRAFSSS----GGVSTLHADSGKLGTKLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSYRGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWRAPQKKNKDE 153
            + AR      P  F+ +    G  + L+AD+    TK  H  +L +LA +P AV  SPSAL +P+D  L   +P+HGHIG+N V+SDY+PK+ +G  R   L  S++   GLL LN +GAG+TE++KA W  P  K ++E
Sbjct:   15 IQARGFRKGTPTKFTENKADTGVNAVLNADNSVYTTKAMHLTSLALLALVPTAVVLSPSALNVPVDYALAALIPIHGHIGLNGVLSDYLPKNVQGLGRVAVLGVSVVTFVGLLSLNITGAGITESVKAIWIEPPSKKEEE 154          
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: W4GD77_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GD77_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.990e-27
Identity = 54/118 (45.76%), Postives = 82/118 (69.49%), Query Frame = 0
Query:   32 SSSGGVSTLHADSGKLGTKLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSYRGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWRAPQKK 149
            + +G  + L+AD+ K  +K+ H  +  +LA +PAAV  SPSAL +P+D +L + +P+H HIG+N V+SDYVPK+++   RA  L AS++   GL+ LN +GAG+TET+K+ WR P  K
Sbjct:   34 ADTGFNAVLNADNSKHTSKVMHYTSYGLLALVPAAVVLSPSALNVPVDYLLAVLVPVHSHIGINNVVSDYVPKNFKTLARAGVLGASIVTFLGLITLNVTGAGVTETVKSLWREPPSK 151          
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: A0A2D4BN75_PYTIN (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BN75_PYTIN)

HSP 1 Score: 105 bits (261), Expect = 1.540e-25
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 0
Query:   21 RRLHSSAPRAFSS----SGGVSTLHADSGKLGTKLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSYRGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWRAPQKK 149
            R    +AP  F+     SG    L AD+     K+YH  +L +L  +PAA   SPS L++P+D  LG+ +P+H HIGMN VISDYVPK++R   R   L  + +   G+L+ N  G GLTETLK  WR   KK
Sbjct:   24 RHFRKNAPTKFTENKQVSGLAGVLEADNATFSHKVYHLSSLALLGLVPAAFVLSPSVLSVPVDYALGVIIPVHAHIGMNNVISDYVPKAHRTLARLAWLGVTGVMFLGILRNNIEGPGLTETLKTFWREDPKK 156          
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: A0A835YQL9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQL9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.400e-25
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 0
Query:   35 GGVSTLHADSGKLGTKLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSYRGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWRAPQKKNKDEE 154
            G V  ++AD GKLGT ++H +N  +LA +P  +  +P+ +  P++++L +A PLH H+ MNYVISDYVP+  + P R   L  + +A+ GL+KL+ +G GL  T+ A W+ P K+   EE
Sbjct:   33 GAVDVVNADVGKLGTSMFHYLNYGLLAALPVLLV-APTPVRTPVELLLAVAFPLHAHVSMNYVISDYVPRFAQQPARIAMLGVTAVASLGLIKLSLTGPGLVSTVGALWKKPAKEEAKEE 151          
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: A0A7S3PKA9_9STRA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PKA9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.550e-25
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 0
Query:   50 KLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSYRGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWRAPQKKNK 151
            KL+H  NL ++   P A+   PS L+MP+DV L +  PLH H+GMN + +DYVP S  GP R   LA S+++  GLLKL  S  G+T TLKA W+ P+K+ K
Sbjct:   50 KLFHKTNLAVMVLTPLAIVAHPSPLSMPVDVALAIVFPLHAHMGMNIIFTDYVPGSPTGPARMALLAVSVLSTIGLLKLAVSEDGITGTLKAVWKEPKKEEK 151          
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: A0A7S4HRX2_9EUKA (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HRX2_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 5.090e-25
Identity = 58/123 (47.15%), Postives = 76/123 (61.79%), Query Frame = 0
Query:   27 APRAFSSSGGVSTLHAD-SGKLGTKLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSYR----GPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWR 144
            A R   + G +  ++AD SGK+   L+H  NL IL   P A   SPSAL MP+D+ L +ALP HGH+GMN V++DYV K +     GP R L L  S   A GL+KLN +G G+TE +K+ WR
Sbjct:    5 AARPAPAQGTIDMVNADGSGKM-VALWHKCNLAILGLTPLAFVLSPSALNMPIDMALAIALPFHGHVGMNMVLTDYVKKIFGKGAVGPARYLMLGISGTTALGLIKLNVTGVGVTEVIKSLWR 126          
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Match: A4S1G3_OSTLU (Succinate dehydrogenase [ubiquinone] cytochrome b small subunit n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S1G3_OSTLU)

HSP 1 Score: 101 bits (252), Expect = 7.730e-25
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 0
Query:   40 LHADSGKLGTKLYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISDYVPKSYRGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWRA 145
            L+AD G+   K+YH+ ++ + A  PAA A     L +  DV LG A+P+H HI MN++ISDYVPK  RGP RA TLA +   A GL KLN  G G+T T+K+ W+A
Sbjct:    5 LNADRGRGMMKIYHASSIALAALAPAAAAMPEGQLAI--DVALGAAMPVHSHIAMNFIISDYVPKGARGPTRAATLALTAATAVGLFKLNTQGDGITRTVKSLWKA 108          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig692.18013.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTY7_ECTSI8.350e-6468.46Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W7TCL8_9STRA1.420e-3254.95Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S2WU59_9STRA3.470e-2843.17Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A6G0X8T0_9STRA4.000e-2741.43Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
W4GD77_9STRA7.990e-2745.76Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A2D4BN75_PYTIN1.540e-2543.61Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A835YQL9_9STRA3.400e-2541.67Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S3PKA9_9STRA4.550e-2548.04Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A0A7S4HRX2_9EUKA5.090e-2547.15Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]
A4S1G3_OSTLU7.730e-2549.06Succinate dehydrogenase [ubiquinone] cytochrome b ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 44..144
e-value: 9.9E-18
score: 66.0
NoneNo IPR availablePFAMPF05328CybScoord: 54..143
e-value: 1.8E-10
score: 40.6
NoneNo IPR availablePANTHERPTHR13337:SF2SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL SUBUNIT, MITOCHONDRIALcoord: 33..145
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 131..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 80..98
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 75..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..74
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 110..130
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 99..109
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..54
NoneNo IPR availableTMHMMTMhelixcoord: 54..76
NoneNo IPR availableTMHMMTMhelixcoord: 113..135
IPR007992Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybSPANTHERPTHR13337SUCCINATE DEHYDROGENASEcoord: 33..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig692contigF-serratus_M_contig692:64388..79984 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig692.18013.1mRNA_F-serratus_M_contig692.18013.1Fucus serratus malemRNAF-serratus_M_contig692 63586..80053 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig692.18013.1 ID=prot_F-serratus_M_contig692.18013.1|Name=mRNA_F-serratus_M_contig692.18013.1|organism=Fucus serratus male|type=polypeptide|length=172bp
MSTTSRTFSKFLRPIVNVPARRLHSSAPRAFSSSGGVSTLHADSGKLGTK
LYHSVNLVILAGIPAAVATSPSALTMPLDVVLGLALPLHGHIGMNYVISD
YVPKSYRGPVRALTLAASLIAAAGLLKLNFSGAGLTETLKATWRAPQKKN
KDEEQAGSSEDAKTTSKTSAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034804SQR/QFR_C/D
IPR007992CybS