mRNA_F-serratus_M_contig6902.18002.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6902.18002.1
Unique NamemRNA_F-serratus_M_contig6902.18002.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: D7FLK9_ECTSI (TsaA-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLK9_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.770e-11
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1
Query:    1 VNAAERSIRLSGVDLVDGTPVFDIKPYVPDYDCPGPR 111
            VNAAERSI+LSGVDLVDGTPVFDIKPYVPDYD P  R
Sbjct:  203 VNAAERSIKLSGVDLVDGTPVFDIKPYVPDYDRPRAR 239          
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: UPI0018A70660 (tRNA (adenine(37)-N6)-methyltransferase-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A70660)

HSP 1 Score: 55.8 bits (133), Expect = 3.470e-7
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   22 IRLSGVDLVDGTPVFDIKPYVPDYDCPGPR--CDSVADS 132
            I LSG+D++DGTPV DIKPY+P+YDCP P   CDS + S
Sbjct:   86 IYLSGLDILDGTPVVDIKPYIPEYDCPQPEVHCDSPSSS 124          
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: A0A3B3STG3_9TELE (tRNA methyltransferase O n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3STG3_9TELE)

HSP 1 Score: 55.5 bits (132), Expect = 5.230e-7
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1
Query:   19 SIRLSGVDLVDGTPVFDIKPYVPDYDCPGPRCD 117
            ++ LSG+D++DGTPV DIKPY+PDYDCP  R D
Sbjct:   85 TLHLSGIDMIDGTPVLDIKPYIPDYDCPLSRRD 117          
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: A0A3B3SUG2_9TELE (tRNA methyltransferase O n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SUG2_9TELE)

HSP 1 Score: 55.5 bits (132), Expect = 5.430e-7
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1
Query:   19 SIRLSGVDLVDGTPVFDIKPYVPDYDCPGPRCD 117
            ++ LSG+D++DGTPV DIKPY+PDYDCP  R D
Sbjct:  192 TLHLSGIDMIDGTPVLDIKPYIPDYDCPLSRRD 224          
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: A0A7E6FLW1_OCTVU (tRNA (Adenine(37)-N6)-methyltransferase-like isoform X1 n=4 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6FLW1_OCTVU)

HSP 1 Score: 55.5 bits (132), Expect = 5.530e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   19 SIRLSGVDLVDGTPVFDIKPYVPDYDCPGPRCDSVADSVRKN 144
            SI  SG+DL+DGTPV D+KPY+P YDCP     +  +SV KN
Sbjct:  120 SIHFSGIDLLDGTPVLDVKPYIPQYDCPLGASHAEFESVEKN 161          
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: A0A2D4C449_PYTIN (TsaA-like domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C449_PYTIN)

HSP 1 Score: 54.7 bits (130), Expect = 9.000e-7
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 VNAAERSIRLSGVDLVDGTPVFDIKPYVPDYDC 99
            V+ A+R++ LSG+DLVDGTPV DIKPYVP YDC
Sbjct:  163 VDHAKRTVYLSGLDLVDGTPVLDIKPYVPAYDC 195          
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: T0RI72_SAPDV (TsaA-like domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RI72_SAPDV)

HSP 1 Score: 54.7 bits (130), Expect = 9.450e-7
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 VNAAERSIRLSGVDLVDGTPVFDIKPYVPDYDCPGPRCDSVADSVRKNCDVHVAVRGIAEIR 186
            V+ A R++ +SG+DLVDGTP+ D+KPYVP YDC  P   +VA  +        +V  + E +
Sbjct:  189 VDKAARTVVVSGIDLVDGTPIVDLKPYVPAYDCMEPTDVAVAPWIAATVSTQRSVAWVPEAK 250          
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: UPI001C3FA127 (tRNA (adenine(37)-N6)-methyltransferase-like n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3FA127)

HSP 1 Score: 53.9 bits (128), Expect = 1.850e-6
Identity = 22/43 (51.16%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    1 VNAAERSIRLSGVDLVDGTPVFDIKPYVPDYDCPGPRCDSVAD 129
            + ++  ++ LSG+D+++GTPV DIKPY+PDYD P  RCD+ +D
Sbjct:   35 IKSSGDTVCLSGIDMIEGTPVLDIKPYIPDYDTP--RCDASSD 75          
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: A0A7S2NT46_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NT46_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.890e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 VNAAERSIRLSGVDLVDGTPVFDIKPYVPDYDCPGPRCDSVADSVR 138
            V+  +  I +SG+DLVDGTPV D+KP+VP YDC G   D++ +S+R
Sbjct:  253 VDQKQFCIHVSGLDLVDGTPVLDVKPFVPHYDCVGFDVDNIPNSLR 298          
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Match: A0A6M2CUB4_RHIMP (TsaA-like domain-containing protein (Fragment) n=2 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CUB4_RHIMP)

HSP 1 Score: 52.4 bits (124), Expect = 1.960e-6
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 1
Query:    4 NAAERSIRLSGVDLVDGTPVFDIKPYVPDYDCPGPRCDSVAD 129
            N A   + LSGVDLVDGTP+ DIKPY+P YD P    D   D
Sbjct:   18 NRAGAVLHLSGVDLVDGTPILDIKPYLPQYDSPQQETDKAPD 59          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6902.18002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK9_ECTSI1.770e-1189.19TsaA-like domain-containing protein n=2 Tax=Ectoca... [more]
UPI0018A706603.470e-764.10tRNA (adenine(37)-N6)-methyltransferase-like n=1 T... [more]
A0A3B3STG3_9TELE5.230e-766.67tRNA methyltransferase O n=1 Tax=Paramormyrops kin... [more]
A0A3B3SUG2_9TELE5.430e-766.67tRNA methyltransferase O n=2 Tax=Paramormyrops kin... [more]
A0A7E6FLW1_OCTVU5.530e-757.14tRNA (Adenine(37)-N6)-methyltransferase-like isofo... [more]
A0A2D4C449_PYTIN9.000e-772.73TsaA-like domain-containing protein n=2 Tax=Pythiu... [more]
T0RI72_SAPDV9.450e-741.94TsaA-like domain-containing protein n=1 Tax=Saprol... [more]
UPI001C3FA1271.850e-651.16tRNA (adenine(37)-N6)-methyltransferase-like n=1 T... [more]
A0A7S2NT46_9STRA1.890e-652.17Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6M2CUB4_RHIMP1.960e-657.14TsaA-like domain-containing protein (Fragment) n=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6902contigF-serratus_M_contig6902:5273..5530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog2880.D7FLK9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNA (adenine-N6-)-methyltransferase activity
EggNOG OGsCOG1720@1,KOG2942@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932111.6034532-CDS-F-serratus_M_contig6902:5272..55301622932111.6034532-CDS-F-serratus_M_contig6902:5272..5530Fucus serratus maleCDSF-serratus_M_contig6902 5273..5530 +
1690964152.7231581-CDS-F-serratus_M_contig6902:5272..55301690964152.7231581-CDS-F-serratus_M_contig6902:5272..5530Fucus serratus maleCDSF-serratus_M_contig6902 5273..5530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6902.18002.1prot_F-serratus_M_contig6902.18002.1Fucus serratus malepolypeptideF-serratus_M_contig6902 5273..5530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6902.18002.1

>prot_F-serratus_M_contig6902.18002.1 ID=prot_F-serratus_M_contig6902.18002.1|Name=mRNA_F-serratus_M_contig6902.18002.1|organism=Fucus serratus male|type=polypeptide|length=86bp
VNAAERSIRLSGVDLVDGTPVFDIKPYVPDYDCPGPRCDSVADSVRKNCD
VHVAVRGIAEIRRVCGESAGERQRGNCNTTQMTPCP
back to top

mRNA from alignment at F-serratus_M_contig6902:5273..5530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6902.18002.1 ID=mRNA_F-serratus_M_contig6902.18002.1|Name=mRNA_F-serratus_M_contig6902.18002.1|organism=Fucus serratus male|type=mRNA|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig6902:5273..5530+ (Fucus serratus male)
GTGAACGCGGCGGAGCGGTCCATACGATTGTCCGGAGTGGACCTCGTGGA TGGGACACCAGTCTTTGACATAAAACCCTACGTGCCCGACTACGATTGCC CTGGACCGAGATGTGACTCTGTTGCTGACTCGGTCAGGAAGAACTGCGAC GTGCACGTGGCGGTGAGAGGCATTGCGGAAATACGGAGGGTTTGCGGCGA AAGTGCTGGGGAGAGGCAGCGGGGCAATTGCAACACAACGCAAATGACCC CCTGCCCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6902:5273..5530+

>mRNA_F-serratus_M_contig6902.18002.1 ID=mRNA_F-serratus_M_contig6902.18002.1|Name=mRNA_F-serratus_M_contig6902.18002.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig6902:5273..5530+ (Fucus serratus male)
GTGAACGCGGCGGAGCGGTCCATACGATTGTCCGGAGTGGACCTCGTGGA
TGGGACACCAGTCTTTGACATAAAACCCTACGTGCCCGACTACGATTGCC
CTGGACCGAGATGTGACTCTGTTGCTGACTCGGTCAGGAAGAACTGCGAC
GTGCACGTGGCGGTGAGAGGCATTGCGGAAATACGGAGGGTTTGCGGCGA
AAGTGCTGGGGAGAGGCAGCGGGGCAATTGCAACACAACGCAAATGACCC
CCTGCCCAGTGAACGCGGCGGAGCGGTCCATACGATTGTCCGGAGTGGAC
CTCGTGGATGGGACACCAGTCTTTGACATAAAACCCTACGTGCCCGACTA
CGATTGCCCTGGACCGAGATGTGACTCTGTTGCTGACTCGGTCAGGAAGA
ACTGCGACGTGCACGTGGCGGTGAGAGGCATTGCGGAAATACGGAGGGTT
TGCGGCGAAAGTGCTGGGGAGAGGCAGCGGGGCAATTGCAACACAACGCA
AATGACCCCCTGCCCA
back to top