mRNA_F-serratus_M_contig1238.1799.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1238.1799.1 vs. uniprot
Match: D7FW92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW92_ECTSI) HSP 1 Score: 339 bits (870), Expect = 9.100e-99 Identity = 315/901 (34.96%), Postives = 395/901 (43.84%), Query Frame = 1
Query: 1 DVVMVSLTAAALFEIPGHKRVVGLVGGTAVTDFVIPMRAVCRYPDLIFREEAGLGRVFRVATKDAYHKEEVLYPVSALTPPPPRGCSDLPHLPLSWASALPELSLAPTATTVVPELVSSGGLTPQQGAAVAGMISAEDPVIFAAFLVAGTAGAHARGDLGHALETCADADPLVGEGVAGGVGRKWVRGDALRRLASMLEIILADRV-RGRVRLGPLSICGYGGGERETGGKGRXXXXGGEKY-------NASPSVPEWFQADAIALADVALVTGKITKTTYIRALHRAVTLDHGLVRAYHADLDRHRRRGGYEGLPQVTHRAFGA---GVAETPPSPTSAPCTAMLIGEGRSSQTTAATATEMVLEESPVDPRGGAGFTSAGSGVGSKGSGGATTGDEVRAREAELKHGLLHQALSWIVEGIATGGLSARHRSIVERAIATDHPWVSAIYEECKETGDVRGLVLNLQRLPALLERDQATSYAADVSEPPPPGEADATFWPRQQHQSRQPRPHERRDVCQAQDIQAPPWSLPPERRWSCTRDSANVSDGVNATXXXXXXXXXXXXXXXGETDPSTNAREQLGRVIAGCSKLLQLRGAIGEMQARTLSMMASRASPALLAALEAYEGNQDIEGLLLTLQTVVKAKLSLDEEDSDGQRKQQXXXXQSPKARDADARKYEKDSGHSDQQRVTNAANPAATGATATAGTALSPVGSSSSTSNPLGGGGELADISSARHRGEEGRMRFGVGRAASPSPPRSDTPGAANRRSASGARAQELVSAKFAGIRSAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGHQDDVETSGDKRLRQDVSRLIAVMDKSKMLTDRQRVYLLAQMGRRITPAARERHVRYRESGDSKELYAVLMALSAPTSR 2670
D ++L ALFEIP H+RVVGL T VIP+ A CRYP+LIFREE LGRVFR+ TKDA ++EVL+P+SALTPPP G S LP +WAS+ PEL + T +PELVS+G LT QQG V + AEDPV+FAA VAG AG +G G R+ G+A R ASM++++L +V RG G S+ GG GGKGR + S VPE FQ DA+ALADVALVTGKI+K Y+RALH+ VTLD LV AY + + R+ G EG+ + RAFG G P P A +G +++ A T+ L + G +++ AREAEL+ L QALS I EG A GLSA+HR++VE+AI+ HPWVSAIY+ECKETGDVRGL+ GEA + ++ G QL RV+AGCS+LL+LRG IGE + RTL M++R SP LLAA+EAY NQD+E LL TLQT + +LSL XXXX D + + H V R G RAQ V G+ S + E SGD+RLRQDVS+L+AVM K MLTDRQR++LLAQ+GRRIT RE+H +Y +G+SKELY VLMALS P R
Sbjct: 29 DAQEMALLLGALFEIPSHERVVGLASVTGSCG-VIPLSASCRYPNLIFREEERLGRVFRIVTKDAASEDEVLFPISALTPPPSPGLS---RLPPTWASSPPELRVNTAETVAIPELVSTGALTRQQGVLVVERLRAEDPVVFAACRVAGAAGVS------------------LGSSTPAGERRREWSGEAKRSFASMVKVVLGGKVGRGD---GGSSVGEADGGMPRRGGKGRGRRRAWAEEXXEQQLCRRSQEVPESFQVDALALADVALVTGKISKQAYVRALHKVVTLDSSLVSAYLGERKQGRQEDG-EGMLEAVVRAFGPEQQGRTADNDDPRQQPRAAAAVGGVKAA---GAATTDGSLGQ------------------------GRMAAEDLVAREAELRDDFLRQALSLIEEGGA--GLSAQHRAVVEKAISVGHPWVSAIYDECKETGDVRGLM----------------------------GEAGNPAF--------------------------------------------HMVVG------------------------------QLCRVVAGCSQLLRLRGVIGEREERTLKTMSNRGSPVLLAAVEAYGANQDLEDLLDTLQTAAEIELSLTAAXXXXXXXXXXXXXXXXXXXXXDPXQQRRALPHQXXXXXXX----------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXVSRDG-------------------GGRAQASV-----GVSS---------------------------------------DEGKEPSGDRRLRQDVSQLVAVMAKQGMLTDRQRLFLLAQVGRRITRTTREKHAQYLATGNSKELYTVLMALSMPPPR 681
BLAST of mRNA_F-serratus_M_contig1238.1799.1 vs. uniprot
Match: A0A6H5L1T6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T6_9PHAE) HSP 1 Score: 163 bits (412), Expect = 7.990e-42 Identity = 115/234 (49.15%), Postives = 140/234 (59.83%), Query Frame = 1
Query: 124 RYPDLIFREEAGLGRVFRVATKDAYHKEEVLYPVSALTPPPPRGCSDLPHLPLSWASALPELSLAPTATTVVPELVSSGGLTPQQGAAVAGMISAEDPVIFAAFLVAGTAGAHARGDLGHALETCADADPLVGEGVAGGVGRKWVRGDALRRLASMLEIILADRVRGRVRLGPLSICGYGGGERETGGKGRXXXXG--GEKYN----ASPSVPEWFQADAIALADVALVTGKIT 807
RYP+LIFREE LGR+FR+ TKDA ++EVL+P+SALT PP G S LP +WAS+ PEL ++ T VPELVSSG LT QQG V M+ AEDPV+FAA VAG AG T + P AG R+W G+A R ASM++++L +V GR +G S+ GG GGKGR GEK S VPE FQ DAIALADVALVTGK++
Sbjct: 13 RYPNLIFREEERLGRIFRIVTKDAASEDEVLFPISALTLPPSPGLS---RLPPTWASSPPELRVSTAETVAVPELVSSGALTRQQGMLVVEMLRAEDPVVFAACRVAGAAGV-----------TLGSSTP------AGERRREW-SGEAKRNFASMVKVVLGGKV-GRGDVGS-SVGEADGGTLRRGGKGRARGRAWAGEKEQQRCRGSQEVPESFQMDAIALADVALVTGKVS 223
BLAST of mRNA_F-serratus_M_contig1238.1799.1 vs. uniprot
Match: A0A6H5L3A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A7_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.040e-36 Identity = 162/325 (49.85%), Postives = 195/325 (60.00%), Query Frame = 1
Query: 1702 QLGRVIAGCSKLLQLRGAIGEMQARTLSMMASRASPALLAALEAYEGNQDIEGLLLTLQTVVKAKLSLDEEDSDGQRKQQXXXXQSPKARDADARKYEKDSGHSDQQRVTNAANPAATGATATAGTALSPVGSSSSTSNPLGGGGELA-DISSARHRGEEGRMRFGVGRAASPSPPRS-DTPGAANRRSASGARAQELVSAKFAGIRSAAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGHQDDVETSGDKRLRQDVSRLIAVMDKSKMLTDRQRVYLLAQMGRRITPAARERHVRYRESGDSKELYAVLMALSAPTSR 2670
QL RV+AGCS+LL+LRG IGE + R L M++R SP LLAA+EAY NQD+E LL TLQT + +LSL P+ R AD + + G A G +G S S GG + + +SS GR G + P TP AA +A GARAQEL+ A+FAG++SAAEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E SGD+RLRQDVS+L+AVM K MLTDRQR++LLAQMGRRIT RE+H +Y +G+SKELYAVL+ALS P R
Sbjct: 5 QLCRVVAGCSQLLRLRGVIGEREERALKTMSNRGSPVLLAAVEAYGANQDLEDLLDTLQTAAEIELSLT-----------AAAAAVPETRRADPXXXXXXXXXXXXXXLPS-------GVGAGGGRGGLDLGCGSGVSRDGGGRAQASVGVSSDGESXXXGRGSDATGESIWSRPAAEVKTPAAAA--AAVGARAQELMKARFAGMKSAAEAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XEPSGDRRLRQDVSQLVAVMAKQGMLTDRQRLFLLAQMGRRITRTTREKHAQYLATGNSKELYAVLIALSMPLPR 308 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1238.1799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1238.1799.1 >prot_F-serratus_M_contig1238.1799.1 ID=prot_F-serratus_M_contig1238.1799.1|Name=mRNA_F-serratus_M_contig1238.1799.1|organism=Fucus serratus male|type=polypeptide|length=927bp MVSLTAAALFEIPGHKRVVGLVGGTAVTDFVIPMRAVCRYPDLIFREEAGback to top mRNA from alignment at F-serratus_M_contig1238:166560..176332- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1238.1799.1 ID=mRNA_F-serratus_M_contig1238.1799.1|Name=mRNA_F-serratus_M_contig1238.1799.1|organism=Fucus serratus male|type=mRNA|length=9773bp|location=Sequence derived from alignment at F-serratus_M_contig1238:166560..176332- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1238:166560..176332- >mRNA_F-serratus_M_contig1238.1799.1 ID=mRNA_F-serratus_M_contig1238.1799.1|Name=mRNA_F-serratus_M_contig1238.1799.1|organism=Fucus serratus male|type=CDS|length=5562bp|location=Sequence derived from alignment at F-serratus_M_contig1238:166560..176332- (Fucus serratus male)back to top |