mRNA_F-serratus_M_contig690.17995.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig690.17995.1
Unique NamemRNA_F-serratus_M_contig690.17995.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A6H5JSK3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSK3_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.760e-51
Identity = 83/156 (53.21%), Postives = 110/156 (70.51%), Query Frame = 1
Query:  217 RGGTSRWRTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGD----------------SSSKDLGSGQPEVPSACKP 636
            R  + R  TA+  + R VT EELE E+T+WELP+ILDVFATWCGPC+++KPEI K++QAL+GKCRVLK+D+DEEE M   L ++GLPTV+YMKDG+++ RTEG +PA+E+L+LAD+HLFG                  + K   S   + PSAC P
Sbjct:   58 RATSRRGSTAMQVAARLVTGEELEVELTEWELPMILDVFATWCGPCIQLKPEIEKLSQALEGKCRVLKLDSDEEEDMAGALNIYGLPTVIYMKDGKIQHRTEGFLPAEEMLQLADIHLFGKPPPEVTDPADDLFIDADACKPPASAAGDAPSACTP 213          
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S2V5P5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 5.810e-36
Identity = 55/108 (50.93%), Postives = 81/108 (75.00%), Query Frame = 1
Query:  250 GSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLF 573
            G   R VT EELE E TDW+ P++LD++ATWCGPCL + PE++KVAQ    + RVLKMD++ E  ++   KV GLPT+++++DG++K R EGA+P +E++++ D HLF
Sbjct:   90 GPKARSVTGEELEVEFTDWDTPMVLDIYATWCGPCLILAPELDKVAQHFGDRLRVLKMDSEAEPEISGAFKVRGLPTIMFLQDGEIKARIEGALPGEELIKIVDYHLF 197          
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A835Z7J6_9STRA (Thioredoxin-related protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.810e-35
Identity = 63/137 (45.99%), Postives = 95/137 (69.34%), Query Frame = 1
Query:  244 ALGSST----------RKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDLGSGQPEVPS 624
            A+GSS+          R++T  E E E+ D   P++LD+FA WCGPC+ + PE+ K A+ L G+ RVLK+D+D+E+A+T+ L+V+GLPT+LY+KDGQ+ +RTEGAMPA+ ++ +A V L        LG+ +P+ PS
Sbjct:   48 AIGSSSGAGALRMGAVREITGAEFEVELADTSSPILLDIFAVWCGPCVMLAPELEKAAEELGGQVRVLKIDSDKEDAITSALRVYGLPTLLYIKDGQIVYRTEGAMPAEAIVEVASVKL--------LGAPEPDDPS 176          
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S3T121_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T121_9SPIT)

HSP 1 Score: 121 bits (303), Expect = 1.740e-30
Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 1
Query:  226 TSRWRTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDL 597
            TSR    L ++ RKVT  E E E+ D   P++LDVFA WCGPC  M P++ +VA+ L  K RVLK+DADEE  + +TL + GLPTVL + D  V  R EGA+ A E+L + + H FG    K +
Sbjct:   48 TSRSAPPLMAAVRKVTTAEFEEELQDCSTPILLDVFAVWCGPCQLMAPQLEQVAEKLGDKVRVLKVDADEEPEVADTLMIRGLPTVLLINDMSVVMRAEGALMADELLEIVNYHFFGGPKPKSM 171          
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S3TU68_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TU68_EMIHU)

HSP 1 Score: 120 bits (301), Expect = 2.530e-30
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 1
Query:  244 ALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDLGSGQ 609
            A+G+  R+VT EE E E+ D   P++LDVFA WCGPC  M PE++KVA+    +CRVLK+DAD+E  + +TL+V GLPTVL + D  V  R EGA+ A E+  + D H FG      L S Q
Sbjct:   46 AMGA-VRQVTTEEFEAELQDCATPILLDVFAVWCGPCQLMAPEMDKVAEHYGDRCRVLKIDADDEAEVADTLQVRGLPTVLLINDMSVVMRAEGALMADELKEIVDFHFFGGPKPSLLESEQ 166          
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S0HGI7_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HGI7_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 2.400e-29
Identity = 60/134 (44.78%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  208 AHFRGGTSRWRTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDLGSGQ 609
            A   GG SR         R+V   E E  + D   P+ILDVFA WCGPC  M P++  VA+ L  K RVLK+DAD+E  + +TL+V GLPTV+++ D  V  R EGA+ A E+  LAD HLFG      +  G+
Sbjct:   35 ARVSGGVSRCAAPQMGKVRQVNTAEFEEAIQDCSTPIILDVFAVWCGPCQLMAPQLEIVAEKLGDKVRVLKIDADDEPVVASTLRVQGLPTVMFISDMSVVMRAEGALMADELEALADHHLFGGPPPPQIEGGE 168          
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S4HFL5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HFL5_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 2.170e-28
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  238 RTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFG 576
            R+      R+VT  E E E+ D   P+++DV A WCGPC  M P++ +VA+ L+GKCRVLK+D+DEE  + NTL++ GLPT+L + D  +  R EGA+ A E+ +L + H FG
Sbjct:   41 RSVTMGLVRQVTTAEFEEEIQDCSTPILVDVMAVWCGPCQLMAPQLEEVAKRLEGKCRVLKVDSDEEPDVANTLQIRGLPTILLINDMSIIMRAEGALMADELEQLVEHHAFG 153          
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A7S4B483_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B483_CHRCT)

HSP 1 Score: 112 bits (281), Expect = 3.750e-27
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  262 RKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLF 573
            RKV   + E E+ D   P+++D+FATWCGPC  M P++ K A+ L  +CRVLK+DADEE  + + L + GLPTVL + D +V  R EGA+ + E+L+LA+ H F
Sbjct:   66 RKVDTAQFEEEIQDCATPILVDIFATWCGPCQLMAPQLEKAAETLGDRCRVLKIDADEEPEVASALAIQGLPTVLLINDMKVVMRAEGALMSDEILQLAEHHFF 169          
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A4D9CS93_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CS93_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.660e-26
Identity = 50/108 (46.30%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  253 SSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFG 576
            S   KVT EELE ++ +   P++LDV+A WCGPC  +  E++KV      K RVLK+D+DEE  + + LKV+GLPT+ ++++GQ+  R EGAMPA E+ +L + + FG
Sbjct:   57 SGVLKVTGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFG 164          
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Match: A0A2J7ZQ73_9CHLO (Thioredoxin-like protein CITRX, chloroplastic n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZQ73_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 6.660e-25
Identity = 50/136 (36.76%), Postives = 81/136 (59.56%), Query Frame = 1
Query:  217 RGGTSRWRTALGSSTRKVTAEELEFEMTDWELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTNTLKVHGLPTVLYM--KDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDLGSGQPEV 618
            +G  +R          K+T+EELE  +   E  +I+D FATWCGPCL +  E+ KVA+ +DGK +V+K+D DE   + N LK+ GLPT++++  ++G+   RTEG +PA +++ +      G  ++  + S  PE 
Sbjct:   49 QGSAARRSVVARGMVEKITSEELEVAIATRETTIIVDFFATWCGPCLLLAKELEKVAETMDGKVKVVKIDVDENPDLANMLKIQGLPTIVFIPKENGKPALRTEGWLPAAQIMEIVGQMDAGQVAAPPMPSAAPEA 184          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig690.17995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSK3_9PHAE1.760e-5153.21Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2V5P5_9STRA5.810e-3650.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z7J6_9STRA1.810e-3545.99Thioredoxin-related protein n=1 Tax=Tribonema minu... [more]
A0A7S3T121_9SPIT1.740e-3047.58Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S3TU68_EMIHU2.530e-3049.18Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A7S0HGI7_9EUKA2.400e-2944.78Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S4HFL5_9EUKA2.170e-2846.02Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S4B483_CHRCT3.750e-2748.08Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A4D9CS93_9STRA8.660e-2646.30Thioredoxin domain-containing protein n=2 Tax=Mono... [more]
A0A2J7ZQ73_9CHLO6.660e-2536.76Thioredoxin-like protein CITRX, chloroplastic n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig690contigF-serratus_M_contig690:270579..279754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue2.9e-42
Seed eggNOG ortholog2880.D7FZ61
Hectar predicted targeting categorychloroplast
EggNOG free text desc.glycerol ether metabolic process
EggNOG OGsCOG0526@1,KOG0910@2759
Ec32 ortholog descriptionthioredoxin-related protein
Ec32 orthologEc-02_006390.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size786
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig690.17995.1prot_F-serratus_M_contig690.17995.1Fucus serratus malepolypeptideF-serratus_M_contig690 270582..279631 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932111.3204806-UTR-F-serratus_M_contig690:270578..2705811622932111.3204806-UTR-F-serratus_M_contig690:270578..270581Fucus serratus maleUTRF-serratus_M_contig690 270579..270581 +
1690964152.585516-UTR-F-serratus_M_contig690:270578..2705811690964152.585516-UTR-F-serratus_M_contig690:270578..270581Fucus serratus maleUTRF-serratus_M_contig690 270579..270581 +
1622932111.4149842-UTR-F-serratus_M_contig690:279631..2797541622932111.4149842-UTR-F-serratus_M_contig690:279631..279754Fucus serratus maleUTRF-serratus_M_contig690 279632..279754 +
1690964152.6435397-UTR-F-serratus_M_contig690:279631..2797541690964152.6435397-UTR-F-serratus_M_contig690:279631..279754Fucus serratus maleUTRF-serratus_M_contig690 279632..279754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932111.3393872-CDS-F-serratus_M_contig690:270581..2706951622932111.3393872-CDS-F-serratus_M_contig690:270581..270695Fucus serratus maleCDSF-serratus_M_contig690 270582..270695 +
1690964152.6009126-CDS-F-serratus_M_contig690:270581..2706951690964152.6009126-CDS-F-serratus_M_contig690:270581..270695Fucus serratus maleCDSF-serratus_M_contig690 270582..270695 +
1622932111.3612072-CDS-F-serratus_M_contig690:278276..2785401622932111.3612072-CDS-F-serratus_M_contig690:278276..278540Fucus serratus maleCDSF-serratus_M_contig690 278277..278540 +
1690964152.6141195-CDS-F-serratus_M_contig690:278276..2785401690964152.6141195-CDS-F-serratus_M_contig690:278276..278540Fucus serratus maleCDSF-serratus_M_contig690 278277..278540 +
1622932111.3788524-CDS-F-serratus_M_contig690:279009..2790901622932111.3788524-CDS-F-serratus_M_contig690:279009..279090Fucus serratus maleCDSF-serratus_M_contig690 279010..279090 +
1690964152.6239338-CDS-F-serratus_M_contig690:279009..2790901690964152.6239338-CDS-F-serratus_M_contig690:279009..279090Fucus serratus maleCDSF-serratus_M_contig690 279010..279090 +
1622932111.395588-CDS-F-serratus_M_contig690:279430..2796311622932111.395588-CDS-F-serratus_M_contig690:279430..279631Fucus serratus maleCDSF-serratus_M_contig690 279431..279631 +
1690964152.6331263-CDS-F-serratus_M_contig690:279430..2796311690964152.6331263-CDS-F-serratus_M_contig690:279430..279631Fucus serratus maleCDSF-serratus_M_contig690 279431..279631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig690.17995.1

>prot_F-serratus_M_contig690.17995.1 ID=prot_F-serratus_M_contig690.17995.1|Name=mRNA_F-serratus_M_contig690.17995.1|organism=Fucus serratus male|type=polypeptide|length=220bp
MSSSTTIPAFLLLLLLGALTRGFSFLTPPLAPAGSSMEVSSRRRESCTQG
TLAIQQWATSPASLPAAGAHFRGGTSRWRTALGSSTRKVTAEELEFEMTD
WELPLILDVFATWCGPCLEMKPEINKVAQALDGKCRVLKMDADEEEAMTN
TLKVHGLPTVLYMKDGQVKFRTEGAMPAQEVLRLADVHLFGDSSSKDLGS
GQPEVPSACKPLDGDAASE*
back to top

mRNA from alignment at F-serratus_M_contig690:270579..279754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig690.17995.1 ID=mRNA_F-serratus_M_contig690.17995.1|Name=mRNA_F-serratus_M_contig690.17995.1|organism=Fucus serratus male|type=mRNA|length=9176bp|location=Sequence derived from alignment at F-serratus_M_contig690:270579..279754+ (Fucus serratus male)
GACATGTCGTCAAGCACAACCATACCGGCATTTCTCTTGCTGCTACTCCT TGGAGCCTTGACACGTGGTTTCTCCTTTTTGACACCACCGTTGGCGCCTG CAGGATCTTCGATGGAGGTGCGAACAACATTTCACGAACGTTTCCCCTTC ACAAACTGTACTACTGTACTGTACCAGAGAGTAGAACTGTTTGCAGTACT GTAACAGACATCATCATCTAAACAACCCGCGAAGTTACCTCAATCCCACT TTATTTTGATGTGCATCTGTGCTACGATCTACGATGGCGGGGCGGGCTAT GCCAACCTTTCGTTGCTATGCAGTATGTACGTCTGTACAAGTGTATACCA GTACGTAGCCTTCTTTATCTTGGACGTGCATATGTGCTCTGATAGCGAGC TATGGCAACCTTTTGTTTCTATGTACGTCTGTACAAGTATGTAGGTATGT ATGGTCATAGTCCTCACACATACAGCAAGCGTAAGGATCAACCTTCGAAG GTTGCCAATCCTGTTCGTGGTCAGCTGAACAAGGAAAAGGAAAATTTCAC TGTCCCAGTTCATGCCTGAGAATTTGGTCTCGCGAGACGGGTTCGACAGT CCCGTCCCGCGTCAGCTTGCTCATCTCCATACTCAGGCTGAATATGGTGC TTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTATTTATT TAAACCGCCATACTGTAGGCCACCGGGCCAGTCCCGAGTTTATCGGGTCA CGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAGAG CCAGTAAATCTCAAGGTAGTTCCGAACGAGTGCTGCCTTCTTAGCAGGTC ACTATGGACCATATATATATATTTTTTAATCTGACTTATAGCCGATGGAC CTCATGGTTACCATCGTGCCTGTGGTCACAAATGATCTTCCCACCTCTCC CCGTTTCACGCCTTACATTTTTTTTATCGCGATGCTAGTTCAGCAATCTT ACAACTCGTCAACCAATGGTTGAAATTTACTTACTCGCGTTCCCACGCTT TCCGTTACGAAAGAAAGAACACAAATCCTACTTTGGTAAGAATCGAACTC ACGACTTCCGCACGAATAGCAGGTGTGCAGGCTACCTACTATTTATAGAC CAATCAGGCGACGAATACGCCTCTCTTTCCCACACCCACTATTGGTATGA AGTGTATAGGGGTGGTTGTCGATGTCTGGGGCACTCGACAGACACCGTAC TCGATGACTGTGGCAATCGATAGTCACTGCCCTCTATGTATGTATGTATG GTCATCACATATGGTAAGGGTAAGGATCAACTGGGTATGGTTGCCAACCC TGCTCGTGGTCAGCTGAACAAGGAAAATATGTTTTTCTCTCTCCCCGTTC GCGCCTGAGAATTTGGTCTCGCGAGATGGGTTCGGCAGTTCCGTCCCGCG TCAGCCTGCTTCAGGCTGAATCTGGTGCTTACTTACGGGACTCCTCCCGA GTTTCGCGGCTGCGTCCATTTAGTTATTTAAACCGCCATGCGCCATCTTG TCAGCCCCGAGTTTATGGGGTCACGCAAACGCGTACCTATGGCGTTCATA TGCCGAGAGTCCGCAGGCCCCGGGCCAGGAAACCTTAAGTTAGTTCCAAA CGGGTGCTGCCTTGGCAGGTCGCCATAAGTACCGGCGGCTATGTGAAACC AATATACTACCAATACTAAAGGTGCTGTAATTCGATAGTCTCCCAGTTCA ACAGTAAGTGCGGATTTCGTGAGTTCGATACTGTACTTGACAGGACGGTT TCTTTTGTTTTGGTTTCCTTCATGTAGCGGAAAGCGCGTGATAACTTGAG TGAGTTGTACTGTAAATGTGTAAGTATCACCTTCACCAGGCTGTGCATGA TCGTCAAGCCTGCTTGTGGTCAGCTGAACTATTTTCCCGGTTGCCGTTCG CGCCTGAGAATTTGGTTTCGCTAGACCAGTGCGACCGTTCCGTCCCGCGT GAGCCCGCTTCATTCTCGACACCCAGGCTGAATCTTGAGGAACAGAAAAA AAGTTGATCGAAAGCGGGGGGTTTTTTTCTGGTGTTGACCGCATAACCTA GTTCATGGACGAGAAAAATGTTTTCGGATCACTTTTTTCACGAAGAACCG CTTTCGGAGGAGCAGTTGGTAAAATAACGAAAAACTTGGGAAATATGGAA GAAGTGATGTACCAGGAAAAGTGTGATAAGTGATGAGTGATGGGAAATCA CCGCACCAAGAGATACGAAGGCGTTCCTCGGGGGGACGTACGCAAGAGTT CCAACCTGCCTTCGGACAGACACTCACGGGGGATGAAGACATGCATGGAT GACTGCGTTGCGGCGGTGGCGATGGTGGCCACGGTGGCGGCATATCGACG CCGCAAGCAGAGAATCAAGAATATTGATCAGTTGGCACTCGTTCTGGGGT TGCTCGACGAGGAAGAAGTATCATGTCTCAGGACGACTGGAGAACACATA TGTAGCCTTTGCAACGTGTCGTACAGTAGTTACGTCCTCGGTACAGATTA GATGCCGTTGAAGGCCGCCCGCACAGCGGTGTTTGCATGGTACATGACGG TCTGTCAGTTGCATTCGTTTGGTTGTGCAAGCACCACACGATCGAAAACC ACGTGCTGTGCCACGCCACGGTTGCAAGTAGATGCAGTATGTAGGCTATT CGAGACCACCCGCAGCAGTTGGTAGTAGCAAGATTAAAATATTAACATAG TCTAGACGGTGTATATCTTGAACAGACTCTCTAATAGAGCACGGCTGTAG TACGTGCAACTGCCGAGATTCTTCGGCTGGCTTTCGAGTAGATTTATGCT ACCTTTTTGCTGCACCTACACGAATGCAGCTGTCAAGCCGCACCGTACCA TGCGAACACACGCAAGAGCACCTAAGACAGTTTTTGTCCCTACAGCCAAT GCCCTCACCTAAACCTTTTGACTGATTAGAAGGTTTAGATGCGCTCGGAT TTTTCTTAAAAAAAATGGAGCCGTAAAACTCCCCGCATAGGTGTTCGTTC ACATCAGAAATGTCCGTATCAGAAAATAACGTTTGTCCATATACACCGCC GATACTTTTAACATGCCCACTCCATACCAATAGTGGGTGTGGGAAAGAGA GGCGCATATTACTTGGTCCATGGTAACCTGCCAAGGCAGCACCCGTTTGG AACTACCTTGAGGTCTACTGGCCCTGTGCCGACGGACTCTCGGCAGTGAA CGCCATCGGTACGCAATGGCGTGAACCGATAAACTCGGGACTGGCCCGAT GGCCTATGGCGGTTTAAATAAATAAATGGACGCCGCCGCGGAACTCGGGA GGAATCCCGTAAGTAAGCACCAGTTAGCCTGAGTATGGAGATGAGCAAGC TGACGCGGGACGAGACTGCCGAACCCGTCTCGCGAGACCAAATTCTCAGG CGCGAACGCGGACAGGGAACATTTCATTTTCCTTGTTCAGCTGGCCACGA GCAAGATTGGCAACCTTACCCGGTTGATCCTTACTCCTGCTAAATGTGTG ACCAAATATACGCACATAGTGTTTTTTTCTGCCATTAGAGTCGGCCTTAC TCAGTAGCTCCTCCCTATCCTCCCGCTTCCGACGGCGTCCATCTACTATA ATGCCAACCACCACCGGGTCGGTCCCGAGTTTATTGGGTCATGCGCTTGT GTACCTATGGCTTTCACAGCCGAGAGTCCGCCGGAACCGTGCCAGTATTC CTCAAGGCAGTTCTAGTAACGCATTAGTTCCCTTATCAGGAATCACCATG CAGTGTTTTTGTGCGCCTCTCTTTTATTAGTATTAATAGTAGACACGTGC GATACAGACTGTATCGAAGGCGAGACGATGGACATCTGTGATACATATCG GAGTTAAATTCAACCTCTGGTTGGTGAGGTATAAGAGGGCTACTGTACAG GAGGTATAGATAAACTTTCATCGCGACAAAAAAATACATCGAGGTAGTAT TAGCGATGTCGGGGGCATTGTAGATACATAAAAAAATTGGAAAGTTTGGA ATATTTTCAAAACTTTCCAAATTTCCACGTTTCAACATTCGGAAATGGAC AAGCACCTCGAGGTCGCTGTTTGTCCATTTCCAGATTTTGGAAAGTTTCG AAAACATGCTCCTGATGTTGCAAACCCATTGAGGTTCACAATTCTGTCTT TGGTCACAGCCAAAAAAACAAGGGTTATAGGCCAGCTCAAGCTGTGCATG ATGAGGTTTCCTTATCGCCAGGGGCAATAGTAGCGGGCTTCTCGACGGCG CCGAGACCCCAAGTTGGCAATGCGCATGGCAGTCACAGCGTTGCGGCAAC GATCCGGCTACCGGAGAGGAGGAGGACTGCAATCACACGCGAGCGGCTCT GTTGGGACGATCACACGGACAAGTCCGAGCGGGAAGGGACCTTTCACCTT TCAGAGAAAATACCGTCTCTTCCCACGAAATGCGGTGTGCTCCAGGATCG AGTGACATCTACTGCGGTGGTCTCTGAATGTTCTGTCTGTCGGATTCCTG TGAGTTCCGAAGCCCGAAAAGATGTTCGAACTGTCCTGAGGCGTTTCATG CTATCTAGAGCGGGTTTCCCTTTTTTCCAAACCTTGTCCCCAACTGCTGA CATAATTGGTTTATAATGACTCCCCAATTTTTCTAGGTTTACAATACACA ACTTAGAAACGTTTATTTCTATCTAAAACGCTCCTATAAGGGTCTCAATC CCCTAAAACGCAAAAGTTTGCCTTCCAAAATTTGGAAATTTGTTTTAAGC GATATTCCAGCGGTTTGGAATGCTCGACAGTGTAATTTTGGCCAGAAAGC TCTTTTCTCAACCGAGTCAATTGAAAGCCAGCACGCATTACTTCGGTTAT AGATCACGAGCTGACCGATACTCTTGAGCTCGAGGATCACCACCTCACTG GCAACGGGCGTGCCAAGTTTGAGGCTAAGAGGCGGATCGTGGCCATTACA GTGGCAAATTTTAGCGCGGGAGGGACTCCCGAAAAACTGGGATTATGCGG AGGCAACTTGTTCGCCGTTAGAAAACTCGTACAGTAGAAGTTGAAAGCTT TTTAGACCACGCAATGGTACAAGCGCTTCGGATCTCGTCGGAATGGATAT TCGCAACAGTCGATGCTGATATTAAGGTCTCGGGTTGACGTGTACCCATC ACGGTCCTGATGTTTTCCCAACGCACCTCCCTCCCCAAGAAACCCCTGAA GGGTTTTCGTAGAAGCTCCCAGCAGGCATAATTTCCAAAACTTGAAAGTC CCAAGATTGGAAGGAAACTTTATTTCGGAAATCTGTACCTTCGTTCGTTT CTAATATTTCGGAGTAACGCCTCCGACAAACCGTCCAAAAGTTGGAACGT TTCCAAACTTCGGAATTTTTCAGCTGCGTTTAAATCGACTCTTATCAATA GTTAATACAGTCAGAGTAAAAACGTTTGCAGCTATAGTAGGTAGGATTGG TAATCTACTCGTAGAACGTTGAGGCCCATCGGCCGAATGCAAGATACAAA CACAAACAAAAGCAACTCAGGCCCAGTCTTGAACGTCTTTTTCGTTTCCA AAGTTTGGAATGGGAACGTTGGGAAAAGTCTGGAAAAAAGGTCGAAACGC CCATTGGGCAGGTTTGAGTCGTTTCCGACTTCGTGCTCGCCTTGTTTTTT ACAGTCATTTTGCCACGATCTCCGAAAAGGGCTACTCTAAACCTCAGATA GGATACGGGTTCCTTGTACGACGGGCTCTACATGCCAAACACAGGCTCCA AGTTTCAGCCCACGGCATGGACCGTGGTTGGCGTGATGTCTTATCCGCTC ATAGAGAGCTACGCCAAGAAGTTGAGAAAATAGGGGACTTTCGCGGTTAC GACCTCAACATACCCTACTTGGAATAATGTTTGCTGTGGGGCTCGCGGTG ATGCGAAACGTACGGGCGTGATTTAGATAAGACAACGAGACAAGCCTACA GCGAGTTTAGGACTGTGGCATAGCGTTGGCCGCCTCGGTGCTGACCGTTG TGGGGTGGAGCATATGAGACGAGGTGTTCGAAGGGACCTCGGAGGCGTAT TTTCCAAAATTTTCCAACTTTCAGCTTTGGAATGGACGAACAGCGAAAAG GTTTGAGATGGCCTGTTCCAAACTTTTCCAACTTTCCAAGGGTTTACCGG AGGGTTTGGGGGTAAACTGTGGAAACGCTTGGAAAATATTTCTTTGTTCA GACAGAGGCTTTCTTTAAGCCTCCGATACTTTATCGTGTACCGCACATGT TCATTCTACCAATAATAGTATAGGGCTATAGTGAGTGTGGGAAAAGAGAG GCGCACAAAATTGTCATAGTCCATGGTGATACCTGATAAGGCAGCACCCG TTACTCAACTACATCGAGTACTACTGGCCATGTGCCTTCAGACTATCGGC AGTGAACGCCATCGGTACGCAATTGCGTGACCTGATAAACTACAATATAA TGTAATATAATATAATACTGAGTATAATATATATACTGGAGTAATATAAT ATAATACCTGGTATAATATAACATAATATAATATAACATAATAGGTCGCC CCGGTAGCTCAGAGGTTCCTCGTAACCCTCTGACACGTTGGGACGTGAGT TCGATCCCGGCGAACGGGATTTTTCTCACTAAAAAAACAAAACAAAAAAC AAGATAAAAATGCCCAACGGGTGGAGAACGATTAATTCGTTAGTACACAA AATTCGACTGTACGGTCGACGAGGGAAAGGAATGGCTGAATTCTTCTCGC GATAAAAATTAAGGCACGCACCGCAGAAGGAAGGTGGATGAACAATCCTG TGTGATCTTCCTGTGTGACCCCGGCTGGTACATCCATTGATGTCCAGAAT GGATGGGAAGAAAACACACACACACACAATAGGGACTGACCCGATGGAGG TCGACGGCATATATAGGATACCGTCGCGGAAAGCGAGAGGAATCCCGTGA GTAAGCACCATATTCAGCCTGAGTGCGGAGAATAAGCGGGCTGGCGCGGG ACGGGATGACCGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGGACGG AGACGGCGGAAAACACATTTTTTTGTGTTCAGCTGATCACGATCAAGATT TGCAATCATACCCGGATGATCCATATCATACATCATACTCTGCTCAAAGT GCTGACCGTACATCCATACCAGGTAGATAATATATACTCCCTGGTTTTCA TTAGTTTACGAGTGGAATCAGCTGCTTGTGGGTGGGGTACCTTTTTTAGC CAGGGGGCGAGAGGACCTCCTCACCCATCACAGCAATCATTATACTGTAC TTGTATAGTAGTATATTTATATTGCTGTTGAATGAACGCGACGCCTCACG TCGCGAAATGTTAATGATATTGACGAGAGCAAAGAAGCTTGCTGAGGTCG TCGGTACTGTACGAAATGATGTAGCGGAGATCCTATTTGTATAGGACAAC ACGTTCATATTTGTCAATACAGTAATAAGGTTTTAAATATTATTACCCCG TTGAGAAGCGTTCCTCGACGAATATCCTGAAAACGGCGAGAAGGTATATT CATAGCAGCGATTACGAATAGTCTCGCCACTTTTGGCACCGCGTGCTGCG TCGACCTATTAGACCTATAGCGGTTGGAACCCCACGCGCCGGTCGCAGGT TTCTAGCAGAAGGCGAGAATCGTGCACCCAAGGAACACTTGCCATCCAGC AATGGGCGACGTCCCCGGCGTCGCTCCCAGCGGCCGGAGCGCACTTTCGC GGCGGCACCAGCAGGTGGAGAACCGCGTTGGGATCATCGACTCGTAAGGT CACCGCGGAGGAGCTGGAATTTGAGATGACGGACTGGGAACTTCCGTTGA TCCTCGACGTCTTCGCCACTTGGTGCGGACCGTGTCTTGAAATGAAGCCC GAGATCAACAAGGTTGGCGAACATTCCGAGGCAGCACtATCATGATCGAT CTCGAGTTTTTTTTCTTCTTTTTCTTGAAGATTGCGAGGCAGCGTTATCG TTATCGTTATCGACGTTATCGTTACAGGGTATCGACATTCTTCCGTGGTG GTGTGACGACGGTTGAAGCGTCGTACTCGTGATTGACGTCAGTGCGCTCT CGTTAAGGGCGCTCTCGTCACAGATGGTTTTGAGTAGCCGGACGCTGACG CAACGCCAACTTTATATTTCAGTATGATTATATTAGCAAGTAACCCTCTT TTGACGTTCTGTTTGTGACCGTATTTGGGTGAGATATGCAGCGTGAGTGC GTAGCGGTAGGTATTTTCAACGTGGAAGGTATTTGGTCTAATAGCCACGT TGGTAATTGTCATGTTTCGCGGTCATTTGCCGGGAATCGATCCGCCAGGT AAAGCGCGTTGGGCTCTCTTGACGTATGCAGGTGGCTCAAGCTTTGGATG GCAAGTGCCGGGTTTTGAAAATGGACGCCGACGAGGAAGAAGCGATGACG AACACTCTGAAAGTGGGTACAGACCGCCCGCGTCCTCAGAGGAATGTTTA CTTTAATACTAGAACCTATACCTTGTACGAACCCCCACAATCTTTCTCGT GTGGTATCCCTGGTTCCGAATCCAGTATATCCCTCTTCGCCTTGCCTCCT TTTGCTCTGCCAGCGCTTCAAGCTCGCCCACGGCTTGAAGCCTCATATCT GGCGGGTATTCTGTAGGGGAAAATCGGGGCAATAGGGGTGTTATCTTCCT TGTGACTTCCTGACACTCAATATGTCGCAAGGCTTTCCCGCTCGGTTGTC TATTTTCCACCGCTTCAATCACTCGATGGATCCCGCCCTCTTAACTGTCT AGGTGCATGGGCTACCGACGGTCCTCTACATGAAAGACGGACAGGTCAAG TTCAGGACGGAAGGCGCCATGCCCGCCCAAGAGGTTTTACGGCTAGCGGA TGTCCACCTCTTTGGAGATTCTTCTTCGAAGGATCTGGGTAGCGGGCAGC CCGAGGTTCCATCTGCTTGCAAACCGTTGGATGGCGATGCCGCGAGCGAG TAATGAAGGGAGGGGAAGTAGACCGAAATAATGTGACAGCAGGACACTAG CGGTTCAAAAGCCTCAACCTACCGTTCCTTCACGCCCTTGGGCTTTCAGC AAGAGCACGTTCACTCATGAGATACC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig690:270579..279754+

>mRNA_F-serratus_M_contig690.17995.1 ID=mRNA_F-serratus_M_contig690.17995.1|Name=mRNA_F-serratus_M_contig690.17995.1|organism=Fucus serratus male|type=CDS|length=1320bp|location=Sequence derived from alignment at F-serratus_M_contig690:270579..279754+ (Fucus serratus male)
ATGTCGTCAAGCACAACCATACCGGCATTTCTCTTGCTGCTACTCCTTGG
AGCCTTGACACGTGGTTTCTCCTTTTTGACACCACCGTTGGCGCCTGCAG
GATCTTCGATGGAGATGTCGTCAAGCACAACCATACCGGCATTTCTCTTG
CTGCTACTCCTTGGAGCCTTGACACGTGGTTTCTCCTTTTTGACACCACC
GTTGGCGCCTGCAGGATCTTCGATGGAGGTTTCTAGCAGAAGGCGAGAAT
CGTGCACCCAAGGAACACTTGCCATCCAGCAATGGGCGACGTCCCCGGCG
TCGCTCCCAGCGGCCGGAGCGCACTTTCGCGGCGGCACCAGCAGGTGGAG
AACCGCGTTGGGATCATCGACTCGTAAGGTCACCGCGGAGGAGCTGGAAT
TTGAGATGACGGACTGGGAACTTCCGTTGATCCTCGACGTCTTCGCCACT
TGGTGCGGACCGTGTCTTGAAATGAAGCCCGAGATCAACAAGGTTTCTAG
CAGAAGGCGAGAATCGTGCACCCAAGGAACACTTGCCATCCAGCAATGGG
CGACGTCCCCGGCGTCGCTCCCAGCGGCCGGAGCGCACTTTCGCGGCGGC
ACCAGCAGGTGGAGAACCGCGTTGGGATCATCGACTCGTAAGGTCACCGC
GGAGGAGCTGGAATTTGAGATGACGGACTGGGAACTTCCGTTGATCCTCG
ACGTCTTCGCCACTTGGTGCGGACCGTGTCTTGAAATGAAGCCCGAGATC
AACAAGGTGGCTCAAGCTTTGGATGGCAAGTGCCGGGTTTTGAAAATGGA
CGCCGACGAGGAAGAAGCGATGACGAACACTCTGAAAGTGGCTCAAGCTT
TGGATGGCAAGTGCCGGGTTTTGAAAATGGACGCCGACGAGGAAGAAGCG
ATGACGAACACTCTGAAAGTGCATGGGCTACCGACGGTCCTCTACATGAA
AGACGGACAGGTCAAGTTCAGGACGGAAGGCGCCATGCCCGCCCAAGAGG
TTTTACGGCTAGCGGATGTCCACCTCTTTGGAGATTCTTCTTCGAAGGAT
CTGGGTAGCGGGCAGCCCGAGGTTCCATCTGCTTGCAAACCGTTGGATGG
CGATGCCGCGAGCGAGTAAGTGCATGGGCTACCGACGGTCCTCTACATGA
AAGACGGACAGGTCAAGTTCAGGACGGAAGGCGCCATGCCCGCCCAAGAG
GTTTTACGGCTAGCGGATGTCCACCTCTTTGGAGATTCTTCTTCGAAGGA
TCTGGGTAGCGGGCAGCCCGAGGTTCCATCTGCTTGCAAACCGTTGGATG
GCGATGCCGCGAGCGAGTAA
back to top