mRNA_F-serratus_M_contig690.17997.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig690.17997.1
Unique NamemRNA_F-serratus_M_contig690.17997.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig690.17997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig690contigF-serratus_M_contig690:317987..318891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size680
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig690.17997.1prot_F-serratus_M_contig690.17997.1Fucus serratus malepolypeptideF-serratus_M_contig690 318103..318597 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932111.0739665-UTR-F-serratus_M_contig690:317986..3181021622932111.0739665-UTR-F-serratus_M_contig690:317986..318102Fucus serratus maleUTRF-serratus_M_contig690 317987..318102 -
1690964152.4554355-UTR-F-serratus_M_contig690:317986..3181021690964152.4554355-UTR-F-serratus_M_contig690:317986..318102Fucus serratus maleUTRF-serratus_M_contig690 317987..318102 -
1622932111.1073-UTR-F-serratus_M_contig690:318597..3186221622932111.1073-UTR-F-serratus_M_contig690:318597..318622Fucus serratus maleUTRF-serratus_M_contig690 318598..318622 -
1690964152.4763794-UTR-F-serratus_M_contig690:318597..3186221690964152.4763794-UTR-F-serratus_M_contig690:318597..318622Fucus serratus maleUTRF-serratus_M_contig690 318598..318622 -
1622932111.1245284-UTR-F-serratus_M_contig690:318847..3188911622932111.1245284-UTR-F-serratus_M_contig690:318847..318891Fucus serratus maleUTRF-serratus_M_contig690 318848..318891 -
1690964152.4870093-UTR-F-serratus_M_contig690:318847..3188911690964152.4870093-UTR-F-serratus_M_contig690:318847..318891Fucus serratus maleUTRF-serratus_M_contig690 318848..318891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932111.0893574-CDS-F-serratus_M_contig690:318102..3185971622932111.0893574-CDS-F-serratus_M_contig690:318102..318597Fucus serratus maleCDSF-serratus_M_contig690 318103..318597 -
1690964152.4672222-CDS-F-serratus_M_contig690:318102..3185971690964152.4672222-CDS-F-serratus_M_contig690:318102..318597Fucus serratus maleCDSF-serratus_M_contig690 318103..318597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig690.17997.1

>prot_F-serratus_M_contig690.17997.1 ID=prot_F-serratus_M_contig690.17997.1|Name=mRNA_F-serratus_M_contig690.17997.1|organism=Fucus serratus male|type=polypeptide|length=165bp
MEEVIVASLGDTPDLAREVRTTLAGASLKTQAKDKHPPETGSSTPRDKPW
RKSRAKTSGCVAGVMRAGRAKERVGLWNRDENVVEEQARGERETVGADSV
CVGDGKTWEGKGLHNIVEVGLVDRGMVNGPAMVEHKAGAFSGTKEAAVGD
GMEVKQRSVEGCDG*
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mRNA from alignment at F-serratus_M_contig690:317987..318891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig690.17997.1 ID=mRNA_F-serratus_M_contig690.17997.1|Name=mRNA_F-serratus_M_contig690.17997.1|organism=Fucus serratus male|type=mRNA|length=905bp|location=Sequence derived from alignment at F-serratus_M_contig690:317987..318891- (Fucus serratus male)
AAGAGTTAACAAACGAAAACCTCGGCCAAAGAAGGACTCACCAGGCGAGG
GTTCTCCACCAGAAATGGGGAGATAAACTATGGTGTTCAATCTTTTATTG
GTCGTGTGGTAAAACAATGTTGAGCGATCATAAGACGCCAACACCTTTTG
TGCTAAAACTGGATCAGATAAGTTTCTTGAATCCTTGTTGTATTCCCCGT
CTTATCTCGCACCCCCGTCCCTGAAATTGTGGATGTCCGTCTACCTTCCT
GCCTACCTTCGATAAACAGGGTTGAAGAGCTCGTGGGAGACAACATGGAA
GAGGTCATTGTAGCCAGCCTGGGTGACACCCCCGACCTGGCTCGCGAGGT
CCGCACTACCCTCGCTGGGGCTTCCCTTAAGACACAGGCCAAGGACAAAC
ACCCCCCCGAAACGGGGAGCAGCACCCCTCGTGATAAGCCGTGGAGGAAG
TCGAGAGCCAAGACCAGCGGATGCGTTGCAGGCGTGATGCGCGCTGGACG
TGCCAAAGAGAGAGTGGGGTTGTGGAATCGCGATGAAAATGTGGTTGAAG
AGCAGGCTCGAGGAGAACGAGAGACGGTTGGCGCTGACAGTGTCTGCGTC
GGTGACGGGAAAACATGGGAGGGTAAAGGGCTTCATAATATTGTGGAAGT
CGGACTTGTCGACAGGGGTATGGTAAATGGTCCGGCGATGGTGGAACATA
AGGCCGGGGCTTTCAGCGGCACTAAGGAGGCAGCGGTAGGAGACGGTATG
GAGGTAAAACAGAGAAGCGTTGAAGGCTGCGACGGCTAGGCTGCTGGATG
AAGGCTCTAGACTGAGCATTCGTTTGATGCCGTAGGCACGATAGTTGTTC
TATTAGAAATCCAGAGTGGGGGTGGGAGCTCCTGTGATTGAAACATGTTG
CGAAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig690:317987..318891-

>mRNA_F-serratus_M_contig690.17997.1 ID=mRNA_F-serratus_M_contig690.17997.1|Name=mRNA_F-serratus_M_contig690.17997.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig690:317987..318891- (Fucus serratus male)
ATGGAAGAGGTCATTGTAGCCAGCCTGGGTGACACCCCCGACCTGGCTCG
CGAGGTCCGCACTACCCTCGCTGGGGCTTCCCTTAAGACACAGGCCAAGG
ACAAACACCCCCCCGAAACGGGGAGCAGCACCCCTCGTGATAAGCCGTGG
AGGAAGTCGAGAGCCAAGACCAGCGGATGCGTTGCAGGCGTGATGCGCGC
TGGACGTGCCAAAGAGAGAGTGGGGTTGTGGAATCGCGATGAAAATGTGG
TTGAAGAGCAGGCTCGAGGAGAACGAGAGACGGTTGGCGCTGACAGTGTC
TGCGTCGGTGACGGGAAAACATGGGAGGGTAAAGGGCTTCATAATATTGT
GGAAGTCGGACTTGTCGACAGGGGTATGGTAAATGGTCCGGCGATGGTGG
AACATAAGGCCGGGGCTTTCAGCGGCACTAAGGAGGCAGCGGTAGGAGAC
GGTATGGAGGTAAAACAGAGAAGCGTTGAAGGCTGCGACGGCTAGATGGA
AGAGGTCATTGTAGCCAGCCTGGGTGACACCCCCGACCTGGCTCGCGAGG
TCCGCACTACCCTCGCTGGGGCTTCCCTTAAGACACAGGCCAAGGACAAA
CACCCCCCCGAAACGGGGAGCAGCACCCCTCGTGATAAGCCGTGGAGGAA
GTCGAGAGCCAAGACCAGCGGATGCGTTGCAGGCGTGATGCGCGCTGGAC
GTGCCAAAGAGAGAGTGGGGTTGTGGAATCGCGATGAAAATGTGGTTGAA
GAGCAGGCTCGAGGAGAACGAGAGACGGTTGGCGCTGACAGTGTCTGCGT
CGGTGACGGGAAAACATGGGAGGGTAAAGGGCTTCATAATATTGTGGAAG
TCGGACTTGTCGACAGGGGTATGGTAAATGGTCCGGCGATGGTGGAACAT
AAGGCCGGGGCTTTCAGCGGCACTAAGGAGGCAGCGGTAGGAGACGGTAT
GGAGGTAAAACAGAGAAGCGTTGAAGGCTGCGACGGCTAG
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