mRNA_F-serratus_M_contig690.17998.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig690.17998.1
Unique NamemRNA_F-serratus_M_contig690.17998.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig690.17998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig690contigF-serratus_M_contig690:318943..319908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size323
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig690.17998.1prot_F-serratus_M_contig690.17998.1Fucus serratus malepolypeptideF-serratus_M_contig690 318943..319882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932110.8388903-CDS-F-serratus_M_contig690:318942..3191131622932110.8388903-CDS-F-serratus_M_contig690:318942..319113Fucus serratus maleCDSF-serratus_M_contig690 318943..319113 -
1690964152.343141-CDS-F-serratus_M_contig690:318942..3191131690964152.343141-CDS-F-serratus_M_contig690:318942..319113Fucus serratus maleCDSF-serratus_M_contig690 318943..319113 -
1622932110.8559916-CDS-F-serratus_M_contig690:319405..3195141622932110.8559916-CDS-F-serratus_M_contig690:319405..319514Fucus serratus maleCDSF-serratus_M_contig690 319406..319514 -
1690964152.3530724-CDS-F-serratus_M_contig690:319405..3195141690964152.3530724-CDS-F-serratus_M_contig690:319405..319514Fucus serratus maleCDSF-serratus_M_contig690 319406..319514 -
1622932110.8723853-CDS-F-serratus_M_contig690:319865..3198821622932110.8723853-CDS-F-serratus_M_contig690:319865..319882Fucus serratus maleCDSF-serratus_M_contig690 319866..319882 -
1690964152.3628702-CDS-F-serratus_M_contig690:319865..3198821690964152.3628702-CDS-F-serratus_M_contig690:319865..319882Fucus serratus maleCDSF-serratus_M_contig690 319866..319882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932110.886197-UTR-F-serratus_M_contig690:319882..3199081622932110.886197-UTR-F-serratus_M_contig690:319882..319908Fucus serratus maleUTRF-serratus_M_contig690 319883..319908 -
1690964152.3744946-UTR-F-serratus_M_contig690:319882..3199081690964152.3744946-UTR-F-serratus_M_contig690:319882..319908Fucus serratus maleUTRF-serratus_M_contig690 319883..319908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig690.17998.1

>prot_F-serratus_M_contig690.17998.1 ID=prot_F-serratus_M_contig690.17998.1|Name=mRNA_F-serratus_M_contig690.17998.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MENMLRSPKGKEIDPDDVAKMVKEALRHAVSDKGFMVKAGKEVMDMAVTS
VNTLSLLTAIVPHCATSGFKMAEEGVVYASKCLGVMSKDELIGRKDGRK
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mRNA from alignment at F-serratus_M_contig690:318943..319908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig690.17998.1 ID=mRNA_F-serratus_M_contig690.17998.1|Name=mRNA_F-serratus_M_contig690.17998.1|organism=Fucus serratus male|type=mRNA|length=966bp|location=Sequence derived from alignment at F-serratus_M_contig690:318943..319908- (Fucus serratus male)
ACTGTAGCAGAAATGGTCTCTTCCTTATGGAGAATATGCTCAGGTACTTG
GGGGGTGTCAGGGACCATTGGACCAAGGCATGGAGCAGAATCTTGGTCAT
ATACGGTTCGCAGCGCGCTTGGTCGGCCCGTAGAACAAAGAATGACGAGT
TCGCATATTTGCTAGATATACGCGCTTCTTCCAGATGATCAGGTCGTCAG
AGGCGTATCTGTTGTGCATATCTCTCACTTAAGGTTCTTGAGCGGCCTCT
GTTGCGATTTGAGCAGAAGTCGCGATTATTACCGTTTTTTGGGGCACTCG
GCGTCACATTCCCCCCTAGCCGACATCTAGACCCCGATATTTGATCTTTG
TTCCCCTGACCGTCCCCCCTCTGTACATTGACAATATTTGTCAGGTCTCC
AAAAGGGAAGGAGATCGATCCGGACGATGTGGCCAAGATGGTAAAGGAGG
CGCTGCGACACGCTGTTTCCGACAAGGGATTTATGGTGAAAGCCGGGAAG
GAGGTGGGTACCAAACAAGAGCTGCCAAGACTGTGTGGGTCCTGTCTCTT
GTTGGTAGAACTTAGACTGCGCCATCTAGTGTTGGTCTTTATCGAGAATC
TTGTTGCTTGTCCGTTGTGGGCCTTGCAGCATGATATTGTGCTGGGTCGG
GCCGCTCCATCCGTGACTTGGTATGGAGCTAGCAGCGTGTGTATCGTATT
ACGGCACTATTTATTAGCTCATAGCTGTATGCCGTCATCTAAGACAAAAC
CTTCTATCTTTCCTCTGATGACCCCTTTACACCGTGGAACGCCAGGTCAT
GGACATGGCCGTGACAAGCGTCAATACGCTGTCACTGCTCACCGCCATTG
TTCCCCACTGCGCCACCTCTGGCTTCAAGATGGCTGAGGAAGGGGTGGTG
TATGCTTCCAAATGCTTGGGGGTAATGTCCAAGGATGAGCTTATTGGAAG
GAAGGATGGGAGAAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig690:318943..319908-

>mRNA_F-serratus_M_contig690.17998.1 ID=mRNA_F-serratus_M_contig690.17998.1|Name=mRNA_F-serratus_M_contig690.17998.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig690:318943..319908- (Fucus serratus male)
ATGGAGAATATGCTCAGATGGAGAATATGCTCAGGTCTCCAAAAGGGAAG
GAGATCGATCCGGACGATGTGGCCAAGATGGTAAAGGAGGCGCTGCGACA
CGCTGTTTCCGACAAGGGATTTATGGTGAAAGCCGGGAAGGAGGTCTCCA
AAAGGGAAGGAGATCGATCCGGACGATGTGGCCAAGATGGTAAAGGAGGC
GCTGCGACACGCTGTTTCCGACAAGGGATTTATGGTGAAAGCCGGGAAGG
AGGTCATGGACATGGCCGTGACAAGCGTCAATACGCTGTCACTGCTCACC
GCCATTGTTCCCCACTGCGCCACCTCTGGCTTCAAGATGGCTGAGGAAGG
GGTGGTGTATGCTTCCAAATGCTTGGGGGTAATGTCCAAGGATGAGCTTA
TTGGAAGGAAGGATGGGAGAAAGGTCATGGACATGGCCGTGACAAGCGTC
AATACGCTGTCACTGCTCACCGCCATTGTTCCCCACTGCGCCACCTCTGG
CTTCAAGATGGCTGAGGAAGGGGTGGTGTATGCTTCCAAATGCTTGGGGG
TAATGTCCAAGGATGAGCTTATTGGAAGGAAGGATGGGAGAAAG
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