mRNA_F-serratus_M_contig69.17989.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: D7FJ03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ03_ECTSI) HSP 1 Score: 125 bits (315), Expect = 5.980e-31 Identity = 65/86 (75.58%), Postives = 70/86 (81.40%), Query Frame = 3
Query: 27 MSFPYRCDVRVTYPSASLAKIAITTLDVDDELQPNKIKRSFRVQGSSLHARFEATEARILRVVLSGFYDMALVVTRTFLEFDEEAL 284
MSFPY CD VT+PSASLA IA TL VD ELQPNKI R+ RV+GSSL A+FEATEAR LRVVLSGFYDMA VV RTFLEFD+ L
Sbjct: 1 MSFPYHCDAEVTFPSASLATIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGGL 86
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: A0A6H5K038_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K038_9PHAE) HSP 1 Score: 111 bits (277), Expect = 2.320e-24 Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 3
Query: 603 VEAAGQMYTQPIEFVHLGGNINYNTDLSIEVDWRIRNTWCSFRKYTLELYDRPSAPLELKIRMLRAEVLETMLYGCVTRSPRACLYDTLRRAHHSFPTHCIGWRKNNLT 929
+EAAGQ Y Q EF +LGG +N + DL+ E+++R R W R+Y EL+DRP AP LKIR+L+AE +E +LYGC+T SP + Y TLR HH IG+++ + T
Sbjct: 65 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKSDT 173
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE) HSP 1 Score: 112 bits (279), Expect = 3.860e-24 Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 3
Query: 603 VEAAGQMYTQPIEFVHLGGNINYNTDLSIEVDWRIRNTWCSFRKYTLELYDRPSAPLELKIRMLRAEVLETMLYGCVTRSPRACLYDTLRRAHHSFPTHCIGWRKNNLT----DHPIFIWTPSCLEVRASWR 986
+EAAGQ Y Q EF +LGG +N + DL+ E+++R R W R+Y EL+DRP AP LKIR+L+AE +E +LYGC+T SP + Y TLR HH +G+++ T H + C V A+ R
Sbjct: 65 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIR 196
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.170e-23 Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 3
Query: 603 VEAAGQMYTQPIEFVHLGGNINYNTDLSIEVDWRIRNTWCSFRKYTLELYDRPSAPLELKIRMLRAEVLETMLYGCVTRSPRACLYDTLRRAHHSFPTHCIGWRKNNLT 929
+EAAGQ Y Q EF +LGG +N + DL+ E+++R R W R+Y EL+DRP AP LKIR+L+AE +E +LYGC+T SP + Y TLR HH IG+++ T
Sbjct: 65 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDT 173
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: A0A6H5LCI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI9_9PHAE) HSP 1 Score: 111 bits (277), Expect = 1.250e-23 Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 3
Query: 603 VEAAGQMYTQPIEFVHLGGNINYNTDLSIEVDWRIRNTWCSFRKYTLELYDRPSAPLELKIRMLRAEVLETMLYGCVTRSPRACLYDTLRRAHHSFPTHCIGWRKNNLT 929
+EAAGQ Y Q EF +LGG +N + DL+ E+++R R W R+Y EL+DRP+AP LKIR+L+AE +E +LYGC+T SP + Y TLR HH IG+++ T
Sbjct: 101 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGWELFDRPNAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDT 209
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: A0A6H5K943_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K943_9PHAE) HSP 1 Score: 112 bits (279), Expect = 5.030e-23 Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = 3
Query: 603 VEAAGQMYTQPIEFVHLGGNINYNTDLSIEVDWRIRNTWCSFRKYTLELYDRPSAPLELKIRMLRAEVLETMLYGCVTRSPRACLYDTLRRAHHSFPTHCIGWRKNNLTDHPIF----IWTPSCLEVRASWRY 989
+EAAGQ Y Q EF +LGG +N + DL+ E+++R R W R+Y EL+DRP AP LKIR+L+AE +E +LYGC+T SP + Y TLR HH IG+++ T + + C V A+ R+
Sbjct: 232 IEAAGQKYAQTTEFQYLGGLVNEHGDLTREINYRSRGAWACLRRYGQELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHPLLLRVIGYKRKKDTYRKLSYAQTLKRVECQSVEATIRH 364
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 113 bits (282), Expect = 7.810e-23 Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 3
Query: 603 VEAAGQMYTQPIEFVHLGGNINYNTDLSIEVDWRIRNTWCSFRKYTLELYDRPSAPLELKIRMLRAEVLETMLYGCVTRSPRACLYDTLRRAHHSFPTHCIGWRKNNLTDHPI----FIWTPSCLEVRASWR 986
+EAAGQ Y Q EF +LGG +N + DL+ E+++R R W R+Y EL+DRP AP LKIR+LRAE +E +LYGC+T SP + Y TLR HH IG+++ T + + C V A+ R
Sbjct: 344 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQMLKRVECQRVEATIR 475
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: A0A6H5JM10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM10_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.680e-22 Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 3
Query: 603 VEAAGQMYTQPIEFVHLGGNINYNTDLSIEVDWRIRNTWCSFRKYTLELYDRPSAPLELKIRMLRAEVLETMLYGCVTRSPRACLYDTLRRAHHSFPTHCIGWRKNNLT 929
+EAAGQ Y Q EF +LGG +N DL+ E+++R R W R+Y LE +DRP AP L IR+L+AE +E +LYGC+T SP + Y TLR HH IG+++ T
Sbjct: 140 IEAAGQKYAQTTEFRYLGGLVNERGDLTQEINYRSRGAWSCLRRYGLEPFDRPKAPFRLNIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKST 248
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: A0A6H5KZ04_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ04_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.710e-22 Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 3
Query: 603 VEAAGQMYTQPIEFVHLGGNINYNTDLSIEVDWRIRNTWCSFRKYTLELYDRPSAPLELKIRMLRAEVLETMLYGCVTRSPRACLYDTLRRAHHSFPTHCIGWRKNNLT 929
+EAAGQ Y Q EF +LGG +N + DL+ E+++R R W R+Y EL+ RP AP LKIR+L+AE +E +LYGC+T SP + Y TLR HH IG+++ T
Sbjct: 150 IEAAGQKYAQTTEFRYLGGLVNEHGDLTPEINYRSRGAWAYLRRYGRELFGRPKAPFRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDT 258
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Match: A0A6H5JQE3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE3_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.000e-22 Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = 3
Query: 603 VEAAGQMYTQPIEFVHLGGNINYNTDLSIEVDWRIRNTWCSFRKYTLELYDRPSAPLELKIRMLRAEVLETMLYGCVTRSPRACLYDTLRRAHHSFPTHCIGWRKNNLT 929
+EAAGQ Y + EF +LGG +N + DL+ E+++R R W R+Y EL+DRP AP LKIR+L+AE +E +LYGC+T SP + Y TLR HH IG+++ T
Sbjct: 271 IEAAGQKYAKTTEFRYLGGLVNEHRDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKAT 379 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig69.17989.1 >prot_F-serratus_M_contig69.17989.1 ID=prot_F-serratus_M_contig69.17989.1|Name=mRNA_F-serratus_M_contig69.17989.1|organism=Fucus serratus male|type=polypeptide|length=106bp MSFPYRCDVRVTYPSASLAKIAITTLDVDDELQPNKIKRSFRVQGSSLHAback to top mRNA from alignment at F-serratus_M_contig69:837637..840460- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig69.17989.1 ID=mRNA_F-serratus_M_contig69.17989.1|Name=mRNA_F-serratus_M_contig69.17989.1|organism=Fucus serratus male|type=mRNA|length=2824bp|location=Sequence derived from alignment at F-serratus_M_contig69:837637..840460- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig69:837637..840460- >mRNA_F-serratus_M_contig69.17989.1 ID=mRNA_F-serratus_M_contig69.17989.1|Name=mRNA_F-serratus_M_contig69.17989.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig69:837637..840460- (Fucus serratus male)back to top |