mRNA_F-serratus_M_contig69.17978.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig69.17978.1
Unique NamemRNA_F-serratus_M_contig69.17978.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig69contigF-serratus_M_contig69:386469..386957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size476
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig69.17978.1prot_F-serratus_M_contig69.17978.1Fucus serratus malepolypeptideF-serratus_M_contig69 386526..386957 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932103.7934911-UTR-F-serratus_M_contig69:386468..3865251622932103.7934911-UTR-F-serratus_M_contig69:386468..386525Fucus serratus maleUTRF-serratus_M_contig69 386469..386525 +
1690964148.415937-UTR-F-serratus_M_contig69:386468..3865251690964148.415937-UTR-F-serratus_M_contig69:386468..386525Fucus serratus maleUTRF-serratus_M_contig69 386469..386525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932103.8168182-CDS-F-serratus_M_contig69:386525..3866441622932103.8168182-CDS-F-serratus_M_contig69:386525..386644Fucus serratus maleCDSF-serratus_M_contig69 386526..386644 +
1690964148.4403782-CDS-F-serratus_M_contig69:386525..3866441690964148.4403782-CDS-F-serratus_M_contig69:386525..386644Fucus serratus maleCDSF-serratus_M_contig69 386526..386644 +
1622932103.8320117-CDS-F-serratus_M_contig69:386659..3869571622932103.8320117-CDS-F-serratus_M_contig69:386659..386957Fucus serratus maleCDSF-serratus_M_contig69 386660..386957 +
1690964148.4527574-CDS-F-serratus_M_contig69:386659..3869571690964148.4527574-CDS-F-serratus_M_contig69:386659..386957Fucus serratus maleCDSF-serratus_M_contig69 386660..386957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig69.17978.1

>prot_F-serratus_M_contig69.17978.1 ID=prot_F-serratus_M_contig69.17978.1|Name=mRNA_F-serratus_M_contig69.17978.1|organism=Fucus serratus male|type=polypeptide|length=139bp
MDSPSITPGRRAEEINLTISLESSSDRCALSQHLPSTAGSREDMSSIQAN
PAAPPAWEIKDDGSESCRGQGLGAGIMSDDTAIMSDNHAALFASSGLDCS
PRSGVPEDTRFSVANLRLDLIPPARPPRLPALALVVMSA
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mRNA from alignment at F-serratus_M_contig69:386469..386957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig69.17978.1 ID=mRNA_F-serratus_M_contig69.17978.1|Name=mRNA_F-serratus_M_contig69.17978.1|organism=Fucus serratus male|type=mRNA|length=489bp|location=Sequence derived from alignment at F-serratus_M_contig69:386469..386957+ (Fucus serratus male)
CCGCGCAACTAGGCAGAAGCGAAACGATTGTACATTTCTCCAACTTCCAT
CGGTACTATGGATTCCCCGTCCATCACGCCGGGACGACGCGCTGAAGAGA
TAAATCTCACGATTTCTCTTGAGTCGTCGTCTGACCGATGCGCGCTGTCG
CAGCATCTACCATCTACCGCAGGCTCGCTAGACAGCTATAGCAGGGAAGA
TATGAGCTCTATTCAAGCCAATCCTGCAGCTCCACCAGCCTGGGAGATCA
AGGATGACGGTTCTGAGAGTTGTCGAGGCCAAGGGCTTGGTGCCGGGATT
ATGAGCGATGATACAGCTATTATGAGCGATAATCACGCCGCACTCTTCGC
TAGCAGCGGCCTCGATTGTTCACCACGTTCAGGTGTACCAGAAGACACCA
GATTCTCCGTTGCGAATTTGCGACTTGACTTAATTCCACCTGCTCGACCA
CCACGACTGCCAGCTCTCGCACTGGTGGTGATGTCAGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig69:386469..386957+

>mRNA_F-serratus_M_contig69.17978.1 ID=mRNA_F-serratus_M_contig69.17978.1|Name=mRNA_F-serratus_M_contig69.17978.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig69:386469..386957+ (Fucus serratus male)
ATGGATTCCCCGTCCATCACGCCGGGACGACGCGCTGAAGAGATAAATCT
CACGATTTCTCTTGAGTCGTCGTCTGACCGATGCGCGCTGTCGCAGCATC
TACCATCTACCGCAGGCTCATGGATTCCCCGTCCATCACGCCGGGACGAC
GCGCTGAAGAGATAAATCTCACGATTTCTCTTGAGTCGTCGTCTGACCGA
TGCGCGCTGTCGCAGCATCTACCATCTACCGCAGGCTCCAGGGAAGATAT
GAGCTCTATTCAAGCCAATCCTGCAGCTCCACCAGCCTGGGAGATCAAGG
ATGACGGTTCTGAGAGTTGTCGAGGCCAAGGGCTTGGTGCCGGGATTATG
AGCGATGATACAGCTATTATGAGCGATAATCACGCCGCACTCTTCGCTAG
CAGCGGCCTCGATTGTTCACCACGTTCAGGTGTACCAGAAGACACCAGAT
TCTCCGTTGCGAATTTGCGACTTGACTTAATTCCACCTGCTCGACCACCA
CGACTGCCAGCTCTCGCACTGGTGGTGATGTCAGCACAGGGAAGATATGA
GCTCTATTCAAGCCAATCCTGCAGCTCCACCAGCCTGGGAGATCAAGGAT
GACGGTTCTGAGAGTTGTCGAGGCCAAGGGCTTGGTGCCGGGATTATGAG
CGATGATACAGCTATTATGAGCGATAATCACGCCGCACTCTTCGCTAGCA
GCGGCCTCGATTGTTCACCACGTTCAGGTGTACCAGAAGACACCAGATTC
TCCGTTGCGAATTTGCGACTTGACTTAATTCCACCTGCTCGACCACCACG
ACTGCCAGCTCTCGCACTGGTGGTGATGTCAGCA
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