mRNA_F-serratus_M_contig69.17972.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig69.17972.1
Unique NamemRNA_F-serratus_M_contig69.17972.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig69contigF-serratus_M_contig69:303921..305271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size660
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig69.17972.1prot_F-serratus_M_contig69.17972.1Fucus serratus malepolypeptideF-serratus_M_contig69 304104..305142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932103.1384418-UTR-F-serratus_M_contig69:303920..3041031622932103.1384418-UTR-F-serratus_M_contig69:303920..304103Fucus serratus maleUTRF-serratus_M_contig69 303921..304103 -
1690964148.1372442-UTR-F-serratus_M_contig69:303920..3041031690964148.1372442-UTR-F-serratus_M_contig69:303920..304103Fucus serratus maleUTRF-serratus_M_contig69 303921..304103 -
1622932103.2410917-UTR-F-serratus_M_contig69:305142..3052711622932103.2410917-UTR-F-serratus_M_contig69:305142..305271Fucus serratus maleUTRF-serratus_M_contig69 305143..305271 -
1690964148.1934476-UTR-F-serratus_M_contig69:305142..3052711690964148.1934476-UTR-F-serratus_M_contig69:305142..305271Fucus serratus maleUTRF-serratus_M_contig69 305143..305271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932103.1766903-CDS-F-serratus_M_contig69:304103..3043221622932103.1766903-CDS-F-serratus_M_contig69:304103..304322Fucus serratus maleCDSF-serratus_M_contig69 304104..304322 -
1690964148.1531417-CDS-F-serratus_M_contig69:304103..3043221690964148.1531417-CDS-F-serratus_M_contig69:304103..304322Fucus serratus maleCDSF-serratus_M_contig69 304104..304322 -
1622932103.1992602-CDS-F-serratus_M_contig69:304873..3049551622932103.1992602-CDS-F-serratus_M_contig69:304873..304955Fucus serratus maleCDSF-serratus_M_contig69 304874..304955 -
1690964148.1645327-CDS-F-serratus_M_contig69:304873..3049551690964148.1645327-CDS-F-serratus_M_contig69:304873..304955Fucus serratus maleCDSF-serratus_M_contig69 304874..304955 -
1622932103.2200484-CDS-F-serratus_M_contig69:305095..3051421622932103.2200484-CDS-F-serratus_M_contig69:305095..305142Fucus serratus maleCDSF-serratus_M_contig69 305096..305142 -
1690964148.1838381-CDS-F-serratus_M_contig69:305095..3051421690964148.1838381-CDS-F-serratus_M_contig69:305095..305142Fucus serratus maleCDSF-serratus_M_contig69 305096..305142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig69.17972.1

>prot_F-serratus_M_contig69.17972.1 ID=prot_F-serratus_M_contig69.17972.1|Name=mRNA_F-serratus_M_contig69.17972.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MYWIGTSQAFRKSCTRKLREPAPPASRSRSRARTTFRNAFVPWSRTWLPG
SVGIPTTSVEATRCFPAACPRASTIFCSSVILVYSIPGAPTFFAISQLKL
LFCFLKKKIGGSDVE*
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mRNA from alignment at F-serratus_M_contig69:303921..305271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig69.17972.1 ID=mRNA_F-serratus_M_contig69.17972.1|Name=mRNA_F-serratus_M_contig69.17972.1|organism=Fucus serratus male|type=mRNA|length=1351bp|location=Sequence derived from alignment at F-serratus_M_contig69:303921..305271- (Fucus serratus male)
GGCTCATGCGGGATCGAGTGAGAGACATGAAGGGTGCTTTGGCTGCAGCC
ACGACGGGGCGGAAGGAGCAGGCGCTGCTGTTAAAATTGCTGGTTTCCCC
GACCGCATCATCGCAGCGCTGTTATTTAAATGTATTGGATCGGAACGAGT
CAGGCGTTTCGTAAATCATGTACCAGGTACGCTTTTACTTGACTTGACCT
GGTATATTAACACCGGCTCCTATGATGAAAATGGCATCGTATTGCACCGT
TTTGTTCTGTAATATATACATATGGTGCGTAATGAAATGGAACGGAATGG
AATGACGTCAATCCAGGAAGCTCAGGGAGCCCGCGCCGCCAGCGTCGAGG
TCGAGGAGCCGGGCACGGACTACGTTCAGGAACGCATTCGTGCCGTGGGT
GAGACGCGATAGCTACTCGATGGATTACAGCATACTCGTATTTTCACCCG
CATGGTGTTGTTCTTCTACTTTATTTATGGATGTCTATGATGTCACTGCG
GACGAAGTACTGTGCAAGAATGCTCAGCAGATCGATTGTTCTCTTTGCTG
CTGTCGCCGTCATGAGAAATGCCTCATTCTCTCGTCGCCATGCTCGCAAT
GAAGGGAGCGTGGTTGTTGGATCCAACATTGTACCTTCATCATATGTTTT
GGATCTCTTCACTTCGAACGTGTGTAGGCGCGGTTTCACGTGAGGCATGG
GGTGTATAAATATACCTGGTATGTGGCTATGTAGATGGGTTGGGATGGAG
GTGGTTGATTCCCTTGATTGTTCTTGATAGTTTTTAATGTTATTGTAGTG
ACTCTCTCTCCCTCCCTCACATTCGTGCGCTCTCTTCCTCCACCTCCCCT
CCCGACGCCCGCGATCTTTTGGCATTATCAACATGCTTTAACATCGCAAT
ATCGACGCCTTCCCTCTGGGCGACTCTTGTCTTCTTGGTGTGATAAAAGA
GCAGAACTTGGCTGCCCGGAAGCGTCGGGATACCCACCACAAGCGTTGAG
GCGACGCGGTGCTTTCCGGCGGCCTGTCCAAGGGCCTCAACGATTTTTTG
CTCTTCAGTAATCCTAGTATATTCGATCCCAGGGGCCCCAACGTTTTTTG
CGATTTCGCAGCTCAAACTTTTGTTCTGTTTTCTGAAAAAGAAAATTGGA
GGAAGTGATGTCGAGTAGACAAAAAAAAACGTAACAGTATTTGTGGACCT
CCATATTCGTCGCCCGAGTGGTCTAGTAGGTAACCTGCATACCTGCTAAT
GCGGAAGTCGTGAGTTCGATTCTTAGCTTAAGCAGAATTTGTGTTCTTTC
CTTTCTTTCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACC
A
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Coding sequence (CDS) from alignment at F-serratus_M_contig69:303921..305271-

>mRNA_F-serratus_M_contig69.17972.1 ID=mRNA_F-serratus_M_contig69.17972.1|Name=mRNA_F-serratus_M_contig69.17972.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig69:303921..305271- (Fucus serratus male)
ATGTATTGGATCGGAACGAGTCAGGCGTTTCGTAAATCATGTACCAGATG
TATTGGATCGGAACGAGTCAGGCGTTTCGTAAATCATGTACCAGGAAGCT
CAGGGAGCCCGCGCCGCCAGCGTCGAGGTCGAGGAGCCGGGCACGGACTA
CGTTCAGGAACGCATTCGTGCCGTGGGAAGCTCAGGGAGCCCGCGCCGCC
AGCGTCGAGGTCGAGGAGCCGGGCACGGACTACGTTCAGGAACGCATTCG
TGCCGTGGAGCAGAACTTGGCTGCCCGGAAGCGTCGGGATACCCACCACA
AGCGTTGAGGCGACGCGGTGCTTTCCGGCGGCCTGTCCAAGGGCCTCAAC
GATTTTTTGCTCTTCAGTAATCCTAGTATATTCGATCCCAGGGGCCCCAA
CGTTTTTTGCGATTTCGCAGCTCAAACTTTTGTTCTGTTTTCTGAAAAAG
AAAATTGGAGGAAGTGATGTCGAGTAGAGCAGAACTTGGCTGCCCGGAAG
CGTCGGGATACCCACCACAAGCGTTGAGGCGACGCGGTGCTTTCCGGCGG
CCTGTCCAAGGGCCTCAACGATTTTTTGCTCTTCAGTAATCCTAGTATAT
TCGATCCCAGGGGCCCCAACGTTTTTTGCGATTTCGCAGCTCAAACTTTT
GTTCTGTTTTCTGAAAAAGAAAATTGGAGGAAGTGATGTCGAGTAG
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