mRNA_F-serratus_M_contig69.17969.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig69.17969.1
Unique NamemRNA_F-serratus_M_contig69.17969.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig69contigF-serratus_M_contig69:286274..287652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size418
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig69.17969.1prot_F-serratus_M_contig69.17969.1Fucus serratus malepolypeptideF-serratus_M_contig69 286274..287652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932102.7265782-CDS-F-serratus_M_contig69:286273..2863511622932102.7265782-CDS-F-serratus_M_contig69:286273..286351Fucus serratus maleCDSF-serratus_M_contig69 286274..286351 -
1690964147.9506829-CDS-F-serratus_M_contig69:286273..2863511690964147.9506829-CDS-F-serratus_M_contig69:286273..286351Fucus serratus maleCDSF-serratus_M_contig69 286274..286351 -
1622932102.7458353-CDS-F-serratus_M_contig69:286650..2867191622932102.7458353-CDS-F-serratus_M_contig69:286650..286719Fucus serratus maleCDSF-serratus_M_contig69 286651..286719 -
1690964147.969492-CDS-F-serratus_M_contig69:286650..2867191690964147.969492-CDS-F-serratus_M_contig69:286650..286719Fucus serratus maleCDSF-serratus_M_contig69 286651..286719 -
1622932102.7698786-CDS-F-serratus_M_contig69:287130..2872571622932102.7698786-CDS-F-serratus_M_contig69:287130..287257Fucus serratus maleCDSF-serratus_M_contig69 287131..287257 -
1690964147.9896028-CDS-F-serratus_M_contig69:287130..2872571690964147.9896028-CDS-F-serratus_M_contig69:287130..287257Fucus serratus maleCDSF-serratus_M_contig69 287131..287257 -
1622932102.788523-CDS-F-serratus_M_contig69:287509..2876521622932102.788523-CDS-F-serratus_M_contig69:287509..287652Fucus serratus maleCDSF-serratus_M_contig69 287510..287652 -
1690964148.0056226-CDS-F-serratus_M_contig69:287509..2876521690964148.0056226-CDS-F-serratus_M_contig69:287509..287652Fucus serratus maleCDSF-serratus_M_contig69 287510..287652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig69.17969.1

>prot_F-serratus_M_contig69.17969.1 ID=prot_F-serratus_M_contig69.17969.1|Name=mRNA_F-serratus_M_contig69.17969.1|organism=Fucus serratus male|type=polypeptide|length=139bp
AGARPKELQNGVACLGTRDEGVRMEAKAGKGRLKVSTEEALTKTKSMRLK
ELGAQHDSQAAGLERAFALRDSTLQRSSALESQLQEAKLQLEAVRTERSG
LAAKVSELEARVRAKELQEGNTAERGSQCSPSRQMGTGG
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mRNA from alignment at F-serratus_M_contig69:286274..287652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig69.17969.1 ID=mRNA_F-serratus_M_contig69.17969.1|Name=mRNA_F-serratus_M_contig69.17969.1|organism=Fucus serratus male|type=mRNA|length=1379bp|location=Sequence derived from alignment at F-serratus_M_contig69:286274..287652- (Fucus serratus male)
GCGGGGGCGCGGCCGAAGGAGTTGCAGAATGGGGTGGCGTGTCTTGGGAC
CCGGGACGAGGGGGTGCGGATGGAGGCGAAGGCAGGGAAGGGACGGCTCA
AAGTTTCGACAGAGGAGGCCTTGACAAAGACCAAATCGATGAGGTACTGG
TACAATTTGGTACGACTTATTTGGTACAAATTGTGCACCAGATCGCACAA
AACTTAATAATGAAGCATACAATCGAACATTATCAACTATTAATGTCTCT
ACAGACCACCTCATCGATTTTTCGTAGGCCATATGTTGTATCTTTGTACG
TATGTGTGTGGGTGTGTGTGTGTGCGTATCAACTGAGCAGCCAAAACACT
CGTTCAGATGTATTTTTCGAGCCCTCTACCCGCGTGAACCAACAGGCTTA
AAGAGTTGGGAGCCCAGCACGACTCGCAAGCCGCAGGACTGGAGCGCGCG
TTTGCTCTTCGTGACTCTACCCTCCAGAGGTCCAGTGCCCTGGAGAGCCA
GCTTCAAGAGGCCAAATTGCAGGTGATACGGGTCGGGTTGCATGGTTCGT
GTTGAAATTCAATTTTGTAATAAAAGTAGATGGCATTATAACCCTATTAT
TATTAATAATAATATTATACACTATTAATATTAATTTTAATATTAATATA
AATAGATTGAAAGCCTACGTGAAAGGTTAAGTAGATTGAGTTGGATTGGA
TTGGATTGGATTGAATGGGACAGCTTGTAATGGGTACTGGTGGTATAATA
TTGATACTAATATTAATAGTGTATGTTGCTCTCACGGCATTTACCAGTAT
GCTGATTACTGATTGGACCAATCTCAAACCCCGCTTGTGCGGTACGTGTG
ACTAACTCAAAAAGGGTGGGCTCTGTGTGCCTGTTTACCTTATGTACTTC
AACGTAATAGTATGTTTATGTTGTACCTGGCAGCTCGAGGCGGTCAGGAC
AGAGCGGAGCGGGCTCGCGGCCAAGGTTTCGGAGCTGGAGGCGCGAGTGA
GGGTGAGAAAAGTTTGTCGTGTTGTCTAGAACCCGACGGCATGGAGTGTC
TATTATAGTATGGCAGGGTTCCGTAGGTATGCAGGTAGCTGTGCTGCTTT
TTCCTTTTCAGGGATACCCGAATCCACATCGGGTTTTTGAGGTGAGACGA
AAGGCGTTTTCTTCTATTGGCGATAGATCCCTGATCTGTAACATCAAAGG
GTATCACTAATTTGCTTATACCGCAATAAGTGTTGCTAAATAGTAGAGCT
ATAACTATCCTGCCCCCCCTTCGATGCACGCTACGACGCCGATGACCCAA
GGCAAAGGAATTGCAGGAGGGCAACACGGCGGAGCGAGGCTCCCAGTGCA
GCCCTTCTAGGCAAATGGGAACCGGAGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig69:286274..287652-

>mRNA_F-serratus_M_contig69.17969.1 ID=mRNA_F-serratus_M_contig69.17969.1|Name=mRNA_F-serratus_M_contig69.17969.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig69:286274..287652- (Fucus serratus male)
GCGGGGGCGCGGCCGAAGGAGTTGCAGAATGGGGTGGCGTGTCTTGGGAC
CCGGGACGAGGGGGTGCGGATGGAGGCGAAGGCAGGGAAGGGACGGCTCA
AAGTTTCGACAGAGGAGGCCTTGACAAAGACCAAATCGATGAGGCGGGGG
CGCGGCCGAAGGAGTTGCAGAATGGGGTGGCGTGTCTTGGGACCCGGGAC
GAGGGGGTGCGGATGGAGGCGAAGGCAGGGAAGGGACGGCTCAAAGTTTC
GACAGAGGAGGCCTTGACAAAGACCAAATCGATGAGGCTTAAAGAGTTGG
GAGCCCAGCACGACTCGCAAGCCGCAGGACTGGAGCGCGCGTTTGCTCTT
CGTGACTCTACCCTCCAGAGGTCCAGTGCCCTGGAGAGCCAGCTTCAAGA
GGCCAAATTGCAGGCTTAAAGAGTTGGGAGCCCAGCACGACTCGCAAGCC
GCAGGACTGGAGCGCGCGTTTGCTCTTCGTGACTCTACCCTCCAGAGGTC
CAGTGCCCTGGAGAGCCAGCTTCAAGAGGCCAAATTGCAGCTCGAGGCGG
TCAGGACAGAGCGGAGCGGGCTCGCGGCCAAGGTTTCGGAGCTGGAGGCG
CGAGTGAGGCTCGAGGCGGTCAGGACAGAGCGGAGCGGGCTCGCGGCCAA
GGTTTCGGAGCTGGAGGCGCGAGTGAGGGCAAAGGAATTGCAGGAGGGCA
ACACGGCGGAGCGAGGCTCCCAGTGCAGCCCTTCTAGGCAAATGGGAACC
GGAGGAGCAAAGGAATTGCAGGAGGGCAACACGGCGGAGCGAGGCTCCCA
GTGCAGCCCTTCTAGGCAAATGGGAACCGGAGGA
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