mRNA_F-serratus_M_contig6898.17956.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6898.17956.1
Unique NamemRNA_F-serratus_M_contig6898.17956.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6898.17956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6898contigF-serratus_M_contig6898:14718..17118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size485
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6898.17956.1prot_F-serratus_M_contig6898.17956.1Fucus serratus malepolypeptideF-serratus_M_contig6898 15666..17118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932102.5753117-UTR-F-serratus_M_contig6898:14717..148961622932102.5753117-UTR-F-serratus_M_contig6898:14717..14896Fucus serratus maleUTRF-serratus_M_contig6898 14718..14896 +
1690964147.8976116-UTR-F-serratus_M_contig6898:14717..148961690964147.8976116-UTR-F-serratus_M_contig6898:14717..14896Fucus serratus maleUTRF-serratus_M_contig6898 14718..14896 +
1622932102.5926895-UTR-F-serratus_M_contig6898:15622..156651622932102.5926895-UTR-F-serratus_M_contig6898:15622..15665Fucus serratus maleUTRF-serratus_M_contig6898 15623..15665 +
1690964147.9097886-UTR-F-serratus_M_contig6898:15622..156651690964147.9097886-UTR-F-serratus_M_contig6898:15622..15665Fucus serratus maleUTRF-serratus_M_contig6898 15623..15665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932102.609091-CDS-F-serratus_M_contig6898:15665..156961622932102.609091-CDS-F-serratus_M_contig6898:15665..15696Fucus serratus maleCDSF-serratus_M_contig6898 15666..15696 +
1690964147.920875-CDS-F-serratus_M_contig6898:15665..156961690964147.920875-CDS-F-serratus_M_contig6898:15665..15696Fucus serratus maleCDSF-serratus_M_contig6898 15666..15696 +
1622932102.6279233-CDS-F-serratus_M_contig6898:16211..162971622932102.6279233-CDS-F-serratus_M_contig6898:16211..16297Fucus serratus maleCDSF-serratus_M_contig6898 16212..16297 +
1690964147.929778-CDS-F-serratus_M_contig6898:16211..162971690964147.929778-CDS-F-serratus_M_contig6898:16211..16297Fucus serratus maleCDSF-serratus_M_contig6898 16212..16297 +
1622932102.6518362-CDS-F-serratus_M_contig6898:16974..171181622932102.6518362-CDS-F-serratus_M_contig6898:16974..17118Fucus serratus maleCDSF-serratus_M_contig6898 16975..17118 +
1690964147.9395208-CDS-F-serratus_M_contig6898:16974..171181690964147.9395208-CDS-F-serratus_M_contig6898:16974..17118Fucus serratus maleCDSF-serratus_M_contig6898 16975..17118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6898.17956.1

>prot_F-serratus_M_contig6898.17956.1 ID=prot_F-serratus_M_contig6898.17956.1|Name=mRNA_F-serratus_M_contig6898.17956.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MSVEEFRGTDGKMYYLAKVNESKVVALRTLDLAENLKRKHENDRTDDDKY
SRRKMRRVESHPVSSVDGGPGNETSEGRPPTPPPVSS
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mRNA from alignment at F-serratus_M_contig6898:14718..17118+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6898.17956.1 ID=mRNA_F-serratus_M_contig6898.17956.1|Name=mRNA_F-serratus_M_contig6898.17956.1|organism=Fucus serratus male|type=mRNA|length=2401bp|location=Sequence derived from alignment at F-serratus_M_contig6898:14718..17118+ (Fucus serratus male)
GATCTATCTCCCCACCTTGCTGGAGCCCGACGATTGCTGCCCAACGCCCC
TTGTGATCGGGGAGATACAAGTCCAGGTATCTGACAATATATTTTGCCAA
GGTATCACCCTCGTGGGGGTCCGCGGGCACCTGACCCATGTGCGACTGGT
TGAGGAGGATGGGGTTCCTTCTCGATCGGGTGAGTCATCGCTTCAGTTGG
GTTGATTTCAGCTTCGTTCCGTTGGAGCCAGTAGCCAGTAGCCAGTATCC
AGCATTCCAGCATCCAGCGGTGTTGTATAGTCAAGTCAAGTCAAGTCAAG
TCAAGGCGCCGTGACAAGTACAGTCTCTCCAGGGGAATGACAAAGAACCA
AACTGCCTGGCTGTACTCGTAGCGTGCTGCAGTCTGCTGTTTATGGTATG
CTCCACTTTACCTACCAATAATGTAGTAGAACAGACGGATTAATAGTATA
TACTGGTATAGTAACTGATGCTGCCTTGAGCCTATCTTATCAAAAGTCAA
GCGCGTCGTCACTAACGTGTAAATAGTATAGTATATATAGTACGATGCTC
GCTCGTTTTTCATTCCGGAAGTTTTTATTTTTATTTTTTCTAGACTACTG
TACTGTAGACCATTGCACTGTACTGTACTGTACTGTATCCTATTTAATAG
TGTTTTGTATTAATAGTTCCGAGCTCACCACCAGTACCAGTGCCTTGAAT
GGCAAGAGTAGAGTAGGCACTATATTTCTATTCTACTGTACTGTACCAGG
TATATATTTTCACTCGTTGAATGAAACTGTTAATATGGTACTGCATTAAT
ACTATCAATAGAAACATGATATAATCAACTACTTGTACCATTAATATCAA
TATTGATACTAACGCGGTATTAATATTAATATTAATATTGATATTGACGC
AACAGTTTCGGGGAAGGCGAGAGCTGGATCAAGGACGTGAAAGCGTACAT
GTCAGTCGAGGAGTTTCGCGGGACAGACGGTAGGGCGTCGTTGGACGAAG
AGCTTTCTAGCGTTGGTATTAATAGGGAAAGAAAGGAAAGGTAGAGTAGA
GGGTAGAGCTATCATTAACATTAACATTAACATTAACAATAGGGCCTGAT
GTACTATTAATATAATATGACTTGTACTATTGATAGTACGTGATGGTCGC
ACTGTACTGTACTCGTGGTGGAAGACCGTCCAAGCCTTGTCTTGCTTCCC
TCTCCTCTTAGGGTACAGGACAGTATTATTATTATTATTCATAATAGTTT
TATAATATTAACATAATACCTGGTAGTAGTATTATTCATACTGGTAGTAT
AATAGTTTAGTCTGCACTCAGGTCCAGTTAGGTGATCAAGTACGTACAGG
ACAGTACTGAAAGTCGTGTTAACAAATAAGACGCCACCCGCTACAACATT
TTGGCCTACCCGACCGGACCTACTGTATTGGGTGACGTGCTCCTTGTCCA
TGTCCATGTCCATGTCCGTTCATGTCCATGTCGAACTCGAGCAGGCAAGA
TGTACTATCTGGCCAAAGTGAATGAGAGCAAGGTGGTCGCTCTTCGTACC
CTGGACCTCGCCGAGAACCTGAAGCGAAAGGTAATGAACAGCGAGAAGAG
AAGAGATACATATGGGTTACATATGTAATGTAGAGAAGAGATGGGTTCGA
CGGTGGTTCGACGACCCAACACCCAACTCTTCGCCTCCGTCCAGTCAGCG
TTGCTGCCTACAATAACGTTTTGATTTTGCTCTGTTATAACACAGCACAA
GGACAACAAGACTTAGTGTCGTCAATACTACATTACAGTATTAATATCAT
TTCACCCTATGCATACTTGGCCCTTTTTACACACCCGTATATACTATTAA
TAAAATACGAATATTGTTTGTTCTCGTAGCCACCTGTAGAAATATTTGGT
TGTAAGGAGAAATAATTATATTTATGCAGTCGTTTGATTATGATGGTGCT
CCTTCCGGGCTTTCTGGCCGCGGAGATGTCTCTCTTTTTTTTCTTTCTTT
TTTTACTTTATTTTACAGTAAGTACGGGTTGGAAGGCGTTACTACATTTG
GGCAATTTCAACCTTCCATTCCGTGCGAGCGATCCACCCACCCTAATGTT
CAAAATACACTTGCCGAGTTGCCGGTCCCATTTCAAATCGGGTACTGATC
GCGTGAAGCGCCAAACCAAAGCTCCAAGCCGTTGTGACCGTGACTGATAC
GACACGCTTTGCTCGTCCGTCCGTCTGTTCATGCTTGCACTTTTTGTTTT
CCTGAAGCATGAAAATGATCGGACGGACGACGACAAATACAGCAGGAGGA
AGATGAGGAGGGTGGAGTCCCACCCCGTCTCCTCCGTAGACGGAGGTCCG
GGGAATGAGACCAGCGAGGGCCGACCGCCGACGCCCCCACCCGTCTCCTC
C
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Coding sequence (CDS) from alignment at F-serratus_M_contig6898:14718..17118+

>mRNA_F-serratus_M_contig6898.17956.1 ID=mRNA_F-serratus_M_contig6898.17956.1|Name=mRNA_F-serratus_M_contig6898.17956.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig6898:14718..17118+ (Fucus serratus male)
ATGTCAGTCGAGGAGTTTCGCGGGACAGACGATGTCAGTCGAGGAGTTTC
GCGGGACAGACGGCAAGATGTACTATCTGGCCAAAGTGAATGAGAGCAAG
GTGGTCGCTCTTCGTACCCTGGACCTCGCCGAGAACCTGAAGCGAAAGGC
AAGATGTACTATCTGGCCAAAGTGAATGAGAGCAAGGTGGTCGCTCTTCG
TACCCTGGACCTCGCCGAGAACCTGAAGCGAAAGCATGAAAATGATCGGA
CGGACGACGACAAATACAGCAGGAGGAAGATGAGGAGGGTGGAGTCCCAC
CCCGTCTCCTCCGTAGACGGAGGTCCGGGGAATGAGACCAGCGAGGGCCG
ACCGCCGACGCCCCCACCCGTCTCCTCCCATGAAAATGATCGGACGGACG
ACGACAAATACAGCAGGAGGAAGATGAGGAGGGTGGAGTCCCACCCCGTC
TCCTCCGTAGACGGAGGTCCGGGGAATGAGACCAGCGAGGGCCGACCGCC
GACGCCCCCACCCGTCTCCTCC
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