mRNA_F-serratus_M_contig6898.17955.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6898.17955.1
Unique NamemRNA_F-serratus_M_contig6898.17955.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6898.17955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6898contigF-serratus_M_contig6898:9533..12446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size492
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6898.17955.1prot_F-serratus_M_contig6898.17955.1Fucus serratus malepolypeptideF-serratus_M_contig6898 9533..12371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932102.457642-CDS-F-serratus_M_contig6898:9532..96251622932102.457642-CDS-F-serratus_M_contig6898:9532..9625Fucus serratus maleCDSF-serratus_M_contig6898 9533..9625 +
1690964147.8505352-CDS-F-serratus_M_contig6898:9532..96251690964147.8505352-CDS-F-serratus_M_contig6898:9532..9625Fucus serratus maleCDSF-serratus_M_contig6898 9533..9625 +
1622932102.4758835-CDS-F-serratus_M_contig6898:10085..101601622932102.4758835-CDS-F-serratus_M_contig6898:10085..10160Fucus serratus maleCDSF-serratus_M_contig6898 10086..10160 +
1690964147.87024-CDS-F-serratus_M_contig6898:10085..101601690964147.87024-CDS-F-serratus_M_contig6898:10085..10160Fucus serratus maleCDSF-serratus_M_contig6898 10086..10160 +
1622932102.5099475-CDS-F-serratus_M_contig6898:12122..123711622932102.5099475-CDS-F-serratus_M_contig6898:12122..12371Fucus serratus maleCDSF-serratus_M_contig6898 12123..12371 +
1690964147.8790946-CDS-F-serratus_M_contig6898:12122..123711690964147.8790946-CDS-F-serratus_M_contig6898:12122..12371Fucus serratus maleCDSF-serratus_M_contig6898 12123..12371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932102.5335872-UTR-F-serratus_M_contig6898:12371..124461622932102.5335872-UTR-F-serratus_M_contig6898:12371..12446Fucus serratus maleUTRF-serratus_M_contig6898 12372..12446 +
1690964147.8878841-UTR-F-serratus_M_contig6898:12371..124461690964147.8878841-UTR-F-serratus_M_contig6898:12371..12446Fucus serratus maleUTRF-serratus_M_contig6898 12372..12446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6898.17955.1

>prot_F-serratus_M_contig6898.17955.1 ID=prot_F-serratus_M_contig6898.17955.1|Name=mRNA_F-serratus_M_contig6898.17955.1|organism=Fucus serratus male|type=polypeptide|length=139bp
MRLWPLNIGDLGDDLFNSVSVALWGCTDDDKIRLVTVHAWGLSCSPNGPV
YVLPRPVLQNLVAKVLEHDEKLLYDVWKKVFHMEEHQASLCCSWYLLPGT
RYFFITAICSTVLCYFFFRTQNSLISVLVVVFLFCRLP*
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mRNA from alignment at F-serratus_M_contig6898:9533..12446+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6898.17955.1 ID=mRNA_F-serratus_M_contig6898.17955.1|Name=mRNA_F-serratus_M_contig6898.17955.1|organism=Fucus serratus male|type=mRNA|length=2914bp|location=Sequence derived from alignment at F-serratus_M_contig6898:9533..12446+ (Fucus serratus male)
ATGCGGCTGTGGCCGTTGAATATTGGTGATCTTGGGGACGACCTGTTCAA
CTCAGTTTCGGTAGCCCTTTGGGGGTGCACGGATGATGACAAAGTGAGTG
AAAGATTGTACGTCGAATGTCCACATGCCGTATGTAGTGGTTTAAAGAAA
AATCTGAACGCATCTAGACCTTCTGAGCATACTGTACTGTACTGTATCCC
AGTTAGGGGGGAAAATGTCAAAACGTTTAGGCAGGGTCATAGGCTGCAAA
TACGAAACCTCTTCATGGCATTTCAATGGGTTCCCCGATGATAGTAACAT
TGGGTCAACAGTATAATGCTGGGGGGAGAAACCCACCGTTATGCTGTACA
TTTATATTAAACGCCGTGCAGGGACACCAGACAAAAACAGAAACGAAAAC
ATTTTGAGTACTCAACTAAAACAGGTTTATTATAAATATATGCAGTAAAC
TGTGCTCTTTCAGTATCGACCCTTATCCAAAACGGTATGGCTTTTTGCCC
CACCGGTGGGTTTTCCTCTTGTTTACCCCACCACCTGGATCTCGCGTCAG
AAGATACGGTTGGTCACAGTACATGCATGGGGTCTATCGTGCAGCCCAAA
CGGTCCTGTCTACGTGCTGCCACGGCCGGTGAGGTGGTTGGTGTTTTCTG
GTATGTTTGGCTATTTGCCCTACCGGTATGGGGATTCCGCTGTACCCCAC
CGGCCGTAACAGCACGTAGACAAGGCCGTTTGTGCTGCACGATAGACCTC
ATGATAGCCCTGCAACGCGCCAACACACTCATGCATGTACTGTGACCAAC
CGTGTCTTCTGACGCGAGATCCAGGTGGTGGGGTAAACAAGAGGAAAACC
CACTGGTGGGGCAAATAACCATTTCGTATCCAATAAGGGCTTAAAGTCTA
GAACACAAGCAATATTACAATATTGTCATTGGCAAAGAGAAATACATTTC
CCAGGTACATTTTACAAAAATCCGCAGGAAGATTGTTCTCCATGTATAAA
ATTGTTGTTTCGTAGGCTAAAAATACAAGCTCTTCATGACATCACTATGA
AATGAATAACCATGCAGGGACACCCAAGCGCAACATTTACCAAAAGCGCG
ATAAGCTGGGGATACAACTCAAATTGTTACATTGGGTCTAAGATCAGATG
ATGATAGGTGACAATAAAGGAAGTCTAAATTATATTCTAGATATAGAGGT
GATGATGGAAAATTGTCCTATATTATATTACTATACGGTACATACTTACC
AGCAGTAGCGCTTGTGGTGCTTGTAGTTCATTCACACTGTATCTTACGTT
TGTGACAGCATGAGTAAGGTGGTCATCACATATAGCAAGAGTATGGATCA
ACCGGGTAAGGTCACCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATT
AATATTTCCCTGTCTGCGTTCGCGCCTGAGAATTTGCTGTTCGGCAGTCC
CATCACGCGTCGGCCTGGTCATCTCCATACTCAGGCTGAATCTGGTGCTT
ACTTACGAGATTCCTCCCGAGTTCCGCGACGGCGCCCATTTATTTGTTTT
AGCCGCCATACGCCATCGGGTCAATCCCGAGAGAGTCCGCCGGCACAGGA
CCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGATCACC
ATGGACCAATTCATGTGCGCCTCTCTTTCCCACACCCACTATTGGTATGA
AGTGGGCATGTTGAAAGTACCGGCGATGTTAAAGACCACTGCTACGGCAG
AAGCGGGGAGCATGTGGCAGGTTAAAAAAATATGAAAACAAAACAAAACA
AAAAACAACCATAAATGTACGCTAGTCGTGTTATGAAAAAAAAGGCGATG
GACAAAATCAGGTACTGCATATCCAGGTGTTTCCAGGACAAAATCGAGTA
TAATAGCATAATACTGGTAGCATGATAGCATAATAGCATAATAGCATGTT
TTTACGTGCGGAAAGGTTCGGGGAGGCTTTTTGCTAGATTAAAGCAGCAG
CTCCGTTTGAACAAAAGTAGACAAAAACGGACACTTCCCAAACTTGGTAG
GTACAACCGGGCATATACCCGGATGTTCTGTAGACAAAATCGGGCAATAT
CATACTGTTGATCCCCCTTTAATTTAAAGCACATTTATTTGTAAAAAAAC
AAACAAAGGATGGAGTTGTGAAGAGCAAGCAGAAGGTTTTCGCTGGCTGA
TCCCGATAAACAGGGACCTTCCCATTCTTGGAATCACCAACCCATGTCCG
ATTTTGTCTAAGAAACGCCCGGCCGGGTACAGGGTACAGGGGTACACTGT
ACCCGATTTTGTCCATGAACTCTAAACAAAACTACTGTGTCGTGCTACGT
GACGGATCAAGTGTGAATTTGAAGAGGCGAAAACAGAGAGACGTCGCTCG
AACACTACCTACTATTGATATATTAATACTAATTATGTAGTAATAGGGGT
ACACTGCACAAAGCTACTCTCAGCAGTGGGGTTACAGTTACAAATACAGT
TACCAGGTACATTACAGTTACATTTTTACTCGTACGTAACGTTACAAAGT
TACATTACACACGATACTGCTGTACTGGTACAAACTACAGGTGCTCCAGA
ACTTGGTGGCGAAGGTTCTCGAACACGACGAGAAGCTTCTGTACGACGTG
TGGAAGAAGGTCTTCCACATGGAGGAACATCAGGCGAGCTTATGCTGTAG
TTGGTATCTGTTACCTGGTACCAGGTACTTTTTTATAACTGCTATTTGCT
CTACAGTTCTGTGCTACTTTTTTTTTCGAACACAGAATTCCCTCATTTCT
GTACTGGTAGTTGTTTTTTTGTTTTGCCGTTTGCCATAATGAAGAGCCTG
AGCGAACTAGTCTAGGCACACAGATACCAGTATTATTAGTACATGTAGAA
ACATTTTGGTGCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6898:9533..12446+

>mRNA_F-serratus_M_contig6898.17955.1 ID=mRNA_F-serratus_M_contig6898.17955.1|Name=mRNA_F-serratus_M_contig6898.17955.1|organism=Fucus serratus male|type=CDS|length=834bp|location=Sequence derived from alignment at F-serratus_M_contig6898:9533..12446+ (Fucus serratus male)
ATGCGGCTGTGGCCGTTGAATATTGGTGATCTTGGGGACGACCTGTTCAA
CTCAGTTTCGGTAGCCCTTTGGGGGTGCACGGATGATGACAAAATGCGGC
TGTGGCCGTTGAATATTGGTGATCTTGGGGACGACCTGTTCAACTCAGTT
TCGGTAGCCCTTTGGGGGTGCACGGATGATGACAAAATACGGTTGGTCAC
AGTACATGCATGGGGTCTATCGTGCAGCCCAAACGGTCCTGTCTACGTGC
TGCCACGGCCGATACGGTTGGTCACAGTACATGCATGGGGTCTATCGTGC
AGCCCAAACGGTCCTGTCTACGTGCTGCCACGGCCGGTGCTCCAGAACTT
GGTGGCGAAGGTTCTCGAACACGACGAGAAGCTTCTGTACGACGTGTGGA
AGAAGGTCTTCCACATGGAGGAACATCAGGCGAGCTTATGCTGTAGTTGG
TATCTGTTACCTGGTACCAGGTACTTTTTTATAACTGCTATTTGCTCTAC
AGTTCTGTGCTACTTTTTTTTTCGAACACAGAATTCCCTCATTTCTGTAC
TGGTAGTTGTTTTTTTGTTTTGCCGTTTGCCATAAGTGCTCCAGAACTTG
GTGGCGAAGGTTCTCGAACACGACGAGAAGCTTCTGTACGACGTGTGGAA
GAAGGTCTTCCACATGGAGGAACATCAGGCGAGCTTATGCTGTAGTTGGT
ATCTGTTACCTGGTACCAGGTACTTTTTTATAACTGCTATTTGCTCTACA
GTTCTGTGCTACTTTTTTTTTCGAACACAGAATTCCCTCATTTCTGTACT
GGTAGTTGTTTTTTTGTTTTGCCGTTTGCCATAA
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