mRNA_F-serratus_M_contig689.17952.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig689.17952.1
Unique NamemRNA_F-serratus_M_contig689.17952.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6H5KYH9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH9_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 6.580e-52
Identity = 104/254 (40.94%), Postives = 153/254 (60.24%), Query Frame = 1
Query:    1 FDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDATMD--RFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVS 756
            +D +QA+  A +DEE+++ +P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD  +D     A L ++F  K++G+ E++ GC I R+     L   Q  YV+SM+KRFDV+  +++PA+ GV    K D+ +  E       +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI +YL  T+D GITY  +G GL +  Y D+ + A  + RRSVS
Sbjct:  579 WDVKQAYTHATLDEEVFLRLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVDCEELLASLNKEFPTKNLGECEWFDGCAIERDVAAGTLTISQTAYVDSMVKRFDVQSASRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILRYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVS 823          
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 5.050e-50
Identity = 103/273 (37.73%), Postives = 156/273 (57.14%), Query Frame = 1
Query:    1 FDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDATM--------------------DRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSG 759
            +D +QA+  A +DEE+++++P    +    + +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+VD  +                    +   A L +KF  K++ + +++ GC I R+ +T  L+  Q  Y++SM+KRFDV+  +++PA+ GV    K D+ +  E       +P REA+G++MW +T +RPD++ AVRAVAR    P   H  A+ KI  YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG
Sbjct:  402 WDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSG 665          
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.310e-49
Identity = 115/287 (40.07%), Postives = 161/287 (56.10%), Query Frame = 1
Query:    4 DAEQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRK-----------VVD---------ATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAK---VPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVL 768
            D + AFL   ++EEIY+E+PE  +E             V  L +++YGL QA R WN      + ++GFE A ADPCV+ +            VD         A +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES+IK+F  ++ AK    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+++    D RRSVSG +L
Sbjct:   16 DVDTAFLYGKMEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRGEGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFG-QENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDANWAGNRDDRRSVSGMLL 299          
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.230e-49
Identity = 103/273 (37.73%), Postives = 150/273 (54.95%), Query Frame = 1
Query:    1 FDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDATMD--------------------RFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSG 759
            +D +QAF  A +DE++++ +P    E    V +  +AIYGL Q+GR W     D +   GFEQ KADPCVFRK+ D  +                        A L + F  KD+G+  ++ GC + R+ +   L+  Q  Y++S++ RFDV+  + +PA+ GV    K D+    E       +P REA+G++MW +T +RPDI+ AVRAVAR    P   H KA++KI  YL  T+D GITY  +G GL +  Y D+ + A  + RRSVSG
Sbjct:  111 WDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGE-------WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASY-ADAEDRRSVSG 374          
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6A3GJM7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GJM7_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.630e-49
Identity = 114/278 (41.01%), Postives = 154/278 (55.40%), Query Frame = 1
Query:    4 DAEQAFLKADIDEEIYIEIPE---EFQEFPGAVGR------LNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRK------------VVDATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK--KEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVL 768
            D   AFL   ++EE Y+E+PE   E  E   A G       L +++YGL  A R WN      + ++GFE A ADPCV+ +            V D  +    A + +KF++KDMG A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF E PG  H  A +K+  YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:  177 DVNTAFLYGKLEEENYMELPEGLRELLELAEAEGEDDVVCMLLQSLYGLKHASRVWNETIDKHLKSMGFEPADADPCVYTRGEGKDECIVCLYVDDMLIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQRAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLEKPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGILL 452          
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.750e-49
Identity = 100/277 (36.10%), Postives = 153/277 (55.23%), Query Frame = 1
Query:    1 FDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDATM--------------------DRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVL 768
            FD +QAF+++D+DE++++ +PE      G + +LNK++YGL QA R W++     +  +GF Q  AD CVFR + +  +                    D+F  +L     +K++GD  +Y GC   R+     LK  Q  Y E +   F V+   ++P   G+  LS+ D+       EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T D GIT+  G   GL ME + D+D+ +    RRSVSG ++
Sbjct:   38 FDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLV 307          
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 183 bits (465), Expect = 2.750e-49
Identity = 116/286 (40.56%), Postives = 161/286 (56.29%), Query Frame = 1
Query:    4 DAEQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRK-----------VVD---------ATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK--KEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVL 768
            D + AFL   ++ EIY+E+PEE +E             V  L +++YGL QA R WN     ++ ++GFE A ADPCV+ +            VD         A +    A + +KF++KDMG A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK+ PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +L
Sbjct:  508 DVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRGEGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLL 791          
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 179 bits (455), Expect = 4.410e-49
Identity = 115/286 (40.21%), Postives = 158/286 (55.24%), Query Frame = 1
Query:    4 DAEQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRK-----------VVD---------ATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK--KEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVL 768
            D + AFL  +++EEIY+E+PE  +E             V  L +++YGL QA R WN      + + GFE A ADPCV+ +            VD         A +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES+IK+F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G   EAY+D+D+    D RRSVSG +L
Sbjct:  177 DVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRGEGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLL 460          
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 180 bits (456), Expect = 5.000e-49
Identity = 116/286 (40.56%), Postives = 159/286 (55.59%), Query Frame = 1
Query:    4 DAEQAFLKADIDEEIYIEIPE---EFQEFPGAVGR------LNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRK-----------VVD---------ATMDRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVK--KEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVL 768
            D + AFL   ++EEIY+E+PE   E  E   A G       L +++YGL  A R WN+     + ++GFE A ADPCV+ +            VD         A +    A + +KF++KD+G A + +G  I  N + R L   Q  Y ES+IK F  +  K    P   GV  L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPD++ AV  ++RF ENPG  H  + +K  +YLL TKD GI Y GQ  G  +EAY+D+D+    D RRSVSG +L
Sbjct:  210 DFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRGEGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLL 493          
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 6.330e-49
Identity = 101/277 (36.46%), Postives = 150/277 (54.15%), Query Frame = 1
Query:    1 FDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDATM--------------------DRFAAELGQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVL 768
            FD EQAF++++++E++Y+ +P+      G + +L K++YGL QA R W+      + A+GFEQ  AD CVFR + D  +                    D+F A+L +   +K++G+  +Y GC   RN++T  L   Q  + + +   + V     VP +SGV  LS  D  +   E      FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P   H  A M I  Y   T  +GI++  G   G  ++ Y D+DF +    RRSVSG ++
Sbjct:   62 FDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIV 331          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig689.17952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYH9_9PHAE6.580e-5240.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE5.050e-5037.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA1.310e-4940.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE2.230e-4937.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GJM7_9STRA2.630e-4941.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE2.750e-4936.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3YGI7_9STRA2.750e-4940.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q908_9STRA4.410e-4940.21Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q8N8_9STRA5.000e-4940.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JFG2_9PHAE6.330e-4936.46Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig689contigF-serratus_M_contig689:203669..204499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue1.4e-40
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size768
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932102.3959575-CDS-F-serratus_M_contig689:203668..2038971622932102.3959575-CDS-F-serratus_M_contig689:203668..203897Fucus serratus maleCDSF-serratus_M_contig689 203669..203897 +
1690964147.826004-CDS-F-serratus_M_contig689:203668..2038971690964147.826004-CDS-F-serratus_M_contig689:203668..203897Fucus serratus maleCDSF-serratus_M_contig689 203669..203897 +
1622932102.4098845-CDS-F-serratus_M_contig689:203960..2044991622932102.4098845-CDS-F-serratus_M_contig689:203960..204499Fucus serratus maleCDSF-serratus_M_contig689 203961..204499 +
1690964147.8401961-CDS-F-serratus_M_contig689:203960..2044991690964147.8401961-CDS-F-serratus_M_contig689:203960..204499Fucus serratus maleCDSF-serratus_M_contig689 203961..204499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig689.17952.1prot_F-serratus_M_contig689.17952.1Fucus serratus malepolypeptideF-serratus_M_contig689 203669..204499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig689.17952.1

>prot_F-serratus_M_contig689.17952.1 ID=prot_F-serratus_M_contig689.17952.1|Name=mRNA_F-serratus_M_contig689.17952.1|organism=Fucus serratus male|type=polypeptide|length=256bp
FDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNN
KFCDDMTAIGFEQAKADPCVFRKVVDATMDRFAAELGQKFKLKDMGDAEY
YMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKA
DEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPG
PAHKKAVMKIFQYLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRS
VSGAVL
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mRNA from alignment at F-serratus_M_contig689:203669..204499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig689.17952.1 ID=mRNA_F-serratus_M_contig689.17952.1|Name=mRNA_F-serratus_M_contig689.17952.1|organism=Fucus serratus male|type=mRNA|length=831bp|location=Sequence derived from alignment at F-serratus_M_contig689:203669..204499+ (Fucus serratus male)
TTCGACGCAGAGCAGGCGTTTTTGAAGGCGGACATCGACGAGGAGATATA CATAGAGATCCCCGAGGAGTTTCAGGAGTTTCCAGGGGCAGTAGGACGGC TCAACAAGGCCATTTACGGACTCGTGCAGGCGGGGAGGTGTTGGAACAAT AAGTTCTGTGACGACATGACGGCGATTGGGTTCGAGCAGGCAAAGGCGGA CCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGGCGGAGATGGTGGTGG TCGTGCACGTAGACGACATCCTGGCCCACGCAAAAGACAAAGCGACGATG GATAGATTCGCGGCCGAGCTCGGGCAGAAGTTTAAGTTGAAGGACATGGG GGACGCCGAATACTACATGGGCTGTCACATTACCCGGAACCGCAAGACGC GTGAGTTAAAGTTCGACCAACACCTGTACGTGGAGTCGATGATAAAGAGG TTCGATGTCAAGAAGGAAGCCAAGGTACCGGCTGCGTCGGGGGTGCCGAC GCTCTCAAAGGCGGATGAGCCGCAAAGCCCAGAGGAAAAGGAAGAGATGA AGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGGCGACG ATGACACGGCCGGATATCGCGTGCGCCGTACGCGCAGTGGCCAGGTTCTG CGAAAACCCCGGGCCAGCGCATAAGAAGGCAGTGATGAAGATCTTCCAGT ATCTCCTCCACACGAAAGATTGGGGAATTACGTATGGTGGACAGGGCTGT GGACTCTGCATGGAAGCGTATACGGATTCGGATTTCGGAGCCTGCCTGGA CACAAGACGATCGGTTTCAGGTGCGGTGTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig689:203669..204499+

>mRNA_F-serratus_M_contig689.17952.1 ID=mRNA_F-serratus_M_contig689.17952.1|Name=mRNA_F-serratus_M_contig689.17952.1|organism=Fucus serratus male|type=CDS|length=1536bp|location=Sequence derived from alignment at F-serratus_M_contig689:203669..204499+ (Fucus serratus male)
TTCGACGCAGAGCAGGCGTTTTTGAAGGCGGACATCGACGAGGAGATATA
CATAGAGATCCCCGAGGAGTTTCAGGAGTTTCCAGGGGCAGTAGGACGGC
TCAACAAGGCCATTTACGGACTCGTGCAGGCGGGGAGGTGTTGGAACAAT
AAGTTCTGTGACGACATGACGGCGATTGGGTTCGAGCAGGCAAAGGCGGA
CCCGTGCGTGTTCCGCAAGGTCGTTGACGTTCGACGCAGAGCAGGCGTTT
TTGAAGGCGGACATCGACGAGGAGATATACATAGAGATCCCCGAGGAGTT
TCAGGAGTTTCCAGGGGCAGTAGGACGGCTCAACAAGGCCATTTACGGAC
TCGTGCAGGCGGGGAGGTGTTGGAACAATAAGTTCTGTGACGACATGACG
GCGATTGGGTTCGAGCAGGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGT
CGTTGACGCGACGATGGATAGATTCGCGGCCGAGCTCGGGCAGAAGTTTA
AGTTGAAGGACATGGGGGACGCCGAATACTACATGGGCTGTCACATTACC
CGGAACCGCAAGACGCGTGAGTTAAAGTTCGACCAACACCTGTACGTGGA
GTCGATGATAAAGAGGTTCGATGTCAAGAAGGAAGCCAAGGTACCGGCTG
CGTCGGGGGTGCCGACGCTCTCAAAGGCGGATGAGCCGCAAAGCCCAGAG
GAAAAGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCT
CATGTGGACGGCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGCG
CAGTGGCCAGGTTCTGCGAAAACCCCGGGCCAGCGCATAAGAAGGCAGTG
ATGAAGATCTTCCAGTATCTCCTCCACACGAAAGATTGGGGAATTACGTA
TGGTGGACAGGGCTGTGGACTCTGCATGGAAGCGTATACGGATTCGGATT
TCGGAGCCTGCCTGGACACAAGACGATCGGTTTCAGGTGCGGTGTTGCGA
CGATGGATAGATTCGCGGCCGAGCTCGGGCAGAAGTTTAAGTTGAAGGAC
ATGGGGGACGCCGAATACTACATGGGCTGTCACATTACCCGGAACCGCAA
GACGCGTGAGTTAAAGTTCGACCAACACCTGTACGTGGAGTCGATGATAA
AGAGGTTCGATGTCAAGAAGGAAGCCAAGGTACCGGCTGCGTCGGGGGTG
CCGACGCTCTCAAAGGCGGATGAGCCGCAAAGCCCAGAGGAAAAGGAAGA
GATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGG
CGACGATGACACGGCCGGATATCGCGTGCGCCGTACGCGCAGTGGCCAGG
TTCTGCGAAAACCCCGGGCCAGCGCATAAGAAGGCAGTGATGAAGATCTT
CCAGTATCTCCTCCACACGAAAGATTGGGGAATTACGTATGGTGGACAGG
GCTGTGGACTCTGCATGGAAGCGTATACGGATTCGGATTTCGGAGCCTGC
CTGGACACAAGACGATCGGTTTCAGGTGCGGTGTTG
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