mRNA_F-serratus_M_contig689.17948.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig689.17948.1
Unique NamemRNA_F-serratus_M_contig689.17948.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig689.17948.1 vs. uniprot
Match: D8LMC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMC2_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 8.240e-109
Identity = 201/397 (50.63%), Postives = 265/397 (66.75%), Query Frame = 1
Query:    1 GGTDIVVRMFDPDDLAKEAGVQYGGDGDDTLMGMAAGTI---DIVIVGSTYSDDDHLFGLDTPTGEMDWYIAKLDRDNLSVVDDYVYVNGTTNDD-QVGGWHPI------AGVFRGHSVGFDAWVVKLDEDFD-FEWEVQFGTI-VYDIPSKVVLDSDDNIYVIGTSADYSNITSAEEQGEIQSMFVYKLDPSDGSTSWSVTTDLGYLEDESAAYGAVLSEDESELYVSGNTKGIIGDFDGDATDSPELFLVSLDVDDGDINWVWQSEANATAFGTGGVVLAEDGSPIVGGVAFGNQFNLTS---DYWEGGSGDMIAVKVDIDT---LEVVKYFNAPAASNLTEERPMAMVKVDDVDDGVFLIGYEDGDFEDEDVEPSDDDYNYLVLKVELDDLPEE 1137
            GGTD  +  ++ D L  +  VQYGGDGDDT+  MA        IVIVGST SD++HLFGLDT   E D++IA+L   +L V   +V  +   N++  V G  P+      A  +   + G D + +K++ D D   WE  F T  V D+P+ +V+ SD  +YV+G SAD+      +E  E+ S+FVY LD  DGST W +TT+LG L D S A+GAVLS  E+ELY++G+T GII  +DGD T++ ELF+V++D+ +  ++WVWQSEANATAFGT G+VLA+DGSPIVGG+AFG+QFNL+S    YWE GSGD +A K+DID    +EV KYF A AASN T E+P ++VK  DV DGVFLIG +DG F+ ED E  D   NYLVLKVEL+ LPE+
Sbjct:   91 GGTDFAIIKYNSD-LELQDSVQYGGDGDDTITAMAVDESVQSGIVIVGSTASDEEHLFGLDTAPREQDYFIAELSSGDLEVTKQFVNGSQFNNEELTVVGLEPVLDGAYFAAGWAASADGQDWFALKINHDMDDILWEEPFETTAVSDLPTAMVVSSD-AVYVVGYSADFEEDLDDDEVEEVSSLFVYALDVDDGSTLWELTTELGTLADGSQAHGAVLSASETELYIAGHTSGIIPGYDGDTTETDELFVVAIDIAEEAVSWVWQSEANATAFGTAGIVLADDGSPIVGGIAFGDQFNLSSASFTYWEFGSGDFVAAKIDIDDPEDIEVSKYFVAAAASNETREQPFSIVKDTDVADGVFLIGQQDGIFDGEDSEGGDP-LNYLVLKVELEVLPEK 484          
BLAST of mRNA_F-serratus_M_contig689.17948.1 vs. uniprot
Match: A0A6H5L735_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L735_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 1.300e-108
Identity = 202/397 (50.88%), Postives = 263/397 (66.25%), Query Frame = 1
Query:    1 GGTDIVVRMFDPDDLAKEAGVQYGGDGDDTLMGMAAGTID----IVIVGSTYSDDDHLFGLDTPTGEMDWYIAKLDRDNLSVVDDYVYVNGTTNDD-QVGGWHPI------AGVFRGHSVGFDAWVVKLDEDFD-FEWEVQFGTI-VYDIPSKVVLDSDDNIYVIGTSADYSNITSAEEQGEIQSMFVYKLDPSDGSTSWSVTTDLGYLEDESAAYGAVLSEDESELYVSGNTKGIIGDFDGDATDSPELFLVSLDVDDGDINWVWQSEANATAFGTGGVVLAEDGSPIVGGVAFGNQFNLTS---DYWEGGSGDMIAVKVDI---DTLEVVKYFNAPAASNLTEERPMAMVKVDDVDDGVFLIGYEDGDFEDEDVEPSDDDYNYLVLKVELDDLPE 1134
            GGTD VV  FD D L      Q+GGDGDDT+  MA   ++    I+IVGST SDD+HLFGLDT   E D++IA L  D+L V   +V  +   N++  V G  P+      A  +     G D + +K++ D D   W   F T  V D+P+ +V+  ++ +YV+G SAD+      +E  E+ S+FVY LD  DGST W +TT LG L D S A+GAVLS   SELY++G+T GII D+DGD+TD+ ELF+V++D+D  +++WVWQSEANATAFGT G+VLA+DGSPIVGG+AFG+QFNLTS    YWE GSGD +A K+DI   D +EV KYF A AASN T E+P +++K  D  DGVFLIG +DG F++ D E  D   NYLVLKVEL+ LPE
Sbjct:   85 GGTDFVVIRFDSD-LEVVDSAQFGGDGDDTITSMAVDEVNQSGSIIIVGSTASDDEHLFGLDTAPREQDYFIAALSSDDLEVTKQFVNGSQYNNEELTVVGVEPVDEGSYFAAGWAASEDGQDWFALKINHDMDDILWNKSFETTAVSDLPTAMVV-GEEAVYVVGYSADFEGDLDDDEVEEVSSLFVYALDMDDGSTLWELTTQLGSLADGSQAHGAVLSG--SELYIAGHTSGIIPDYDGDSTDTDELFVVAIDIDSEEVSWVWQSEANATAFGTAGIVLADDGSPIVGGIAFGDQFNLTSASFTYWEFGSGDFVAAKLDIEDPDDIEVSKYFVAAAASNETREQPFSIIKDTDTVDGVFLIGQQDGVFDEGDSEGGDP-LNYLVLKVELEVLPE 476          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig689.17948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMC2_ECTSI8.240e-10950.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L735_9PHAE1.300e-10850.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig689contigF-serratus_M_contig689:45888..56475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue2e-07
Seed eggNOG ortholog771875.Ferpe_0702
KEGG koko:K02014
KEGG TC1.B.14
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cell adhesion involved in biofilm formation
EggNOG OGsCOG1470@1,COG1470@2,COG1520@1,COG1520@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons8
Model size1275
Cds size1251
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932102.079446-UTR-F-serratus_M_contig689:45887..459111622932102.079446-UTR-F-serratus_M_contig689:45887..45911Fucus serratus maleUTRF-serratus_M_contig689 45888..45911 +
1690964147.67624-UTR-F-serratus_M_contig689:45887..459111690964147.67624-UTR-F-serratus_M_contig689:45887..45911Fucus serratus maleUTRF-serratus_M_contig689 45888..45911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932102.0934095-CDS-F-serratus_M_contig689:45911..460681622932102.0934095-CDS-F-serratus_M_contig689:45911..46068Fucus serratus maleCDSF-serratus_M_contig689 45912..46068 +
1690964147.6919148-CDS-F-serratus_M_contig689:45911..460681690964147.6919148-CDS-F-serratus_M_contig689:45911..46068Fucus serratus maleCDSF-serratus_M_contig689 45912..46068 +
1622932102.105565-CDS-F-serratus_M_contig689:46902..470401622932102.105565-CDS-F-serratus_M_contig689:46902..47040Fucus serratus maleCDSF-serratus_M_contig689 46903..47040 +
1690964147.709344-CDS-F-serratus_M_contig689:46902..470401690964147.709344-CDS-F-serratus_M_contig689:46902..47040Fucus serratus maleCDSF-serratus_M_contig689 46903..47040 +
1622932102.1204123-CDS-F-serratus_M_contig689:48909..490771622932102.1204123-CDS-F-serratus_M_contig689:48909..49077Fucus serratus maleCDSF-serratus_M_contig689 48910..49077 +
1690964147.7211664-CDS-F-serratus_M_contig689:48909..490771690964147.7211664-CDS-F-serratus_M_contig689:48909..49077Fucus serratus maleCDSF-serratus_M_contig689 48910..49077 +
1622932102.138794-CDS-F-serratus_M_contig689:50304..504051622932102.138794-CDS-F-serratus_M_contig689:50304..50405Fucus serratus maleCDSF-serratus_M_contig689 50305..50405 +
1690964147.733242-CDS-F-serratus_M_contig689:50304..504051690964147.733242-CDS-F-serratus_M_contig689:50304..50405Fucus serratus maleCDSF-serratus_M_contig689 50305..50405 +
1622932102.1572366-CDS-F-serratus_M_contig689:51500..516031622932102.1572366-CDS-F-serratus_M_contig689:51500..51603Fucus serratus maleCDSF-serratus_M_contig689 51501..51603 +
1690964147.7466831-CDS-F-serratus_M_contig689:51500..516031690964147.7466831-CDS-F-serratus_M_contig689:51500..51603Fucus serratus maleCDSF-serratus_M_contig689 51501..51603 +
1622932102.1751192-CDS-F-serratus_M_contig689:53136..533271622932102.1751192-CDS-F-serratus_M_contig689:53136..53327Fucus serratus maleCDSF-serratus_M_contig689 53137..53327 +
1690964147.7567573-CDS-F-serratus_M_contig689:53136..533271690964147.7567573-CDS-F-serratus_M_contig689:53136..53327Fucus serratus maleCDSF-serratus_M_contig689 53137..53327 +
1622932102.1968932-CDS-F-serratus_M_contig689:54061..542601622932102.1968932-CDS-F-serratus_M_contig689:54061..54260Fucus serratus maleCDSF-serratus_M_contig689 54062..54260 +
1690964147.7659228-CDS-F-serratus_M_contig689:54061..542601690964147.7659228-CDS-F-serratus_M_contig689:54061..54260Fucus serratus maleCDSF-serratus_M_contig689 54062..54260 +
1622932102.2097428-CDS-F-serratus_M_contig689:56281..564751622932102.2097428-CDS-F-serratus_M_contig689:56281..56475Fucus serratus maleCDSF-serratus_M_contig689 56282..56475 +
1690964147.7749438-CDS-F-serratus_M_contig689:56281..564751690964147.7749438-CDS-F-serratus_M_contig689:56281..56475Fucus serratus maleCDSF-serratus_M_contig689 56282..56475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig689.17948.1prot_F-serratus_M_contig689.17948.1Fucus serratus malepolypeptideF-serratus_M_contig689 45912..56475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig689.17948.1

>prot_F-serratus_M_contig689.17948.1 ID=prot_F-serratus_M_contig689.17948.1|Name=mRNA_F-serratus_M_contig689.17948.1|organism=Fucus serratus male|type=polypeptide|length=417bp
MFDPDDLAKEAGVQYGGDGDDTLMGMAAGTIDIVIVGSTYSDDDHLFGLD
TPTGEMDWYIAKLDRDNLSVVDDYVYVNGTTNDDQVGGWHPIAGVFRGHS
VGFDAWVVKLDEDFDFEWEVQFGTIVYDIPSKVVLDSDDNIYVIGTSADY
SNITSAEEQGEIQSMFVYKLDPSDGSTSWSVTTDLGYLEDESAAYGAVLS
EDESELYVSGNTKGIIGDFDGDATDSPELFLVSLDVDDGDINWVWQSEAN
ATAFGTGGVVLAEDGSPIVGGVAFGNQFNLTSDYWEGGSGDMIAVKVDID
TLEVVKYFNAPAASNLTEERPMAMVKVDDVDDGVFLIGYEDGDFEDEDVE
PSDDDYNYLVLKVELDDLPEEDDDSDSEWGFTYYYCGAAVFGVGIVLFAF
AYKCAKSSQVCVCVCL*
back to top

mRNA from alignment at F-serratus_M_contig689:45888..56475+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig689.17948.1 ID=mRNA_F-serratus_M_contig689.17948.1|Name=mRNA_F-serratus_M_contig689.17948.1|organism=Fucus serratus male|type=mRNA|length=10588bp|location=Sequence derived from alignment at F-serratus_M_contig689:45888..56475+ (Fucus serratus male)
GGTGGGACCGACATCGTCGTCAGGATGTTCGACCCTGATGATCTTGCGAA AGAGGCAGGTGTCCAGTACGGGGGCGACGGCGACGATACGCTTATGGGCA TGGCCGCGGGCACGATTGACATCGTCATCGTGGGGTCGACCTATTCGGAC GACGACCACCTGTTCGGTCTGGACACGCCAAGTGAGTGGCCACGAGGGGG TTCTCCTTTTTCTCTCTTGTCGTTTTGGTCGCTATTAATAGTATGGAAGA GAGAGAGAGATGAGCGTAGCATGGATACCATCGACCACAACCCTGTCGAA CACCATCTACCAAAACGCGATACCCCCCGCCCCCGTCTAAGCCTACTTCA CAGTTCATAAGTGCACCGGTACGTGAAAAGCGTAAACGTAAAAATGTATC CATTGGAAACCCTTGGAAGTACTTCAGAGTGTGCGTGTACTCACTCGGGC GCAGGTTGTGTATAAGTTTTTGTAGAATAATCACAACACCAACAACACAC GTGGGTGAGAGGGCGCAGCGCGGGCGCGTTTGTGCCCACCCCTAAGAATG GGGGGGGGGGGTTATAGCTCTCTCTCACTCTCGATATAATATGTAAATAT ACATATATATCTGCGGAAGGGGTTTCTGTGGGTTCCTGTTATAACGCCgG GGGGGTCGGCAGCATACGAGATGTGATGTTGGAATTCTATTTTTTTTAAT GTTTATTTGTTTTTCATTCCGAGGTTGTATAGGCGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTTTGTAAATTGCACATGACCACGCAATCCGG CTCTGTAATCTACTAATTCTAGCCTACTGCATGTAACCCACCCGGGGTTA ACTTTTCGTTAATAGAGTATATTTTTGGCTGGAAATGCGAGTGCATCTAG CCACAACTACTCTCCATACTACCACGGCTCTCGGCCGGTGTGTGTGGTGA TGATGTTTTTTTGTTTTTCGGTTTTGTTGTTCATCCTGTACAACGCTTTT TCCCACACGCTGCAGCCGGCGAGATGGACTGGTACATCGCAAAGCTAGAC CGGGACAATTTGTCGGTCGTGGATGATTATGTATATGTCAACGGCACGAC AAACGACGACCAGGTTGGTGGTTGGCATCCTATAGCAGGAGTTTTTCGGG GACGTGTCGGGGCGCACAAATTTGTGGATTATCGGTGGTATGAACATATC CATCTATATATATATATTACGGGCGGAGGAGGGGAGGGAGGTTTTAGGGT AGATAATATTTTGAGAGGTTTAAGAGTAGATAATATCTCCCGGCTCCGAG CTGATAGCAGTGTTATTATCTGAGAGTGCGTCACTTGATGGCGATGTTAT TATCCACACGATCACATATCAGGGGTTTGAAGAGACGGGAGAGGAGGGGA AAGGAAAAATGAAGATGCAAAACTAAATTGTCCAACGACAACTTCCTCCC CCTCCCCCTCCCCCTCCCCCGCCCCCTCCCCCCGAAAAAAATAACCCTTC ACCCCACCAGGTTCAAAAGCACCGATACTATTAATAGCGAAATAGAAACA GAGGTCCTCTGAATTTCGGCAATCCCCCGACGCTAAATCGATAGGGGTTT CTTGAATCCGTCCCGGGGCTGAATTGTTACGCCCCCCCCCGCCCCGCCTC CCTAATCGCGGAGATACAGTAGATTTTACGAAGCTTCCCTCACCCGCCCA TCGGTCTTCTTTTTTTGCTTGATAAAATCGTTAATCGATCGACACCTCCC TCTGCCGGGCGCCTACGGCTCTGCAGGAAGCAACAGCGGTTGCCGTTGCC TCGGACGGGGGGTTCGTCGTGGCCGGCTGGACCTGGGGAGAGTACTTCGA AGAGAACGCGGGGGCGGACAACGACGACGGTAAAGATAATATGTTGTCTA CGTGTGTGCCCGTTGAGATACCGATTGAACTGACCCACAACCCTAACCGT CTGGTACACGCTCAAAACGGGGGTAGGGAAACATATTAGGGTACATAGTG TATGGGGATAATGAAACACTACTCGACCATCGTGGTGTTTTGTTATTGAG TACTGATATTCTCAACCTATCCGCGGTATATTGACGTCGATTGTATGGTC ACACATATAGCAAGAGTAAGGATCATCCCGTGTAAGGTTGCCAATCCTGC TCGTGGTCAGCTTAACAGGGAAAATTAATATTTCCCTGTCCGCGTTCGCG CCTGAGAATTTGGTCTCGCTAGACGGGTTTGTTCGGAAGTCCCGTCCCGC GTCAGCCTGCTCATCTCCATGCTCAGGCTGAATTTGGTGGTTACTTACGG GATTTCTCTCGAGTTCCGCGGCGGCGTGCATTTATTTTTATTGAACCGCC ATACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACG GATGGCGTTCACCGCCGAGAGTCCGACGGCACAGGGCCAGTAAACCTCAA GGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAAATAAT ATGCGCCTCTTTTTCCCACATCCACTAGTGGTATGGAGTGGGCATGTTGA AAGTACTTTCAGCCTGCCGGGTATACATGTATTATAGTTATACAGTATAC AAATTGTATACAAGATACCAGTGCAGGCACTTTCCGAGCCTCGATCTAGG GGCACCCTGACGAAAATTCTCGTACGGTTCTCAAGGGAGACACTTGGTGT ACGTTAGACATTTCAGGTTGTGGTTTGGATGAACAAAGCGTCAAACTGGT GTGACTCATCCTCTTTTTCACAGAATATCATATCGAAACAGTCCTGGCGG AAATAATATCAGTTTTGTCGTTTTGCGGCAATGCTTTTTTCTTTTGTATA ACCCCTCTGCGGCGTCGGCAATCCGTCATCTACACGGTGTCGTTCGTCAT TCTCGAGCCCCGTCGGTCGCTGTCGAGGCAAGGGGGTTGGTGACGTCCGA TTCCATCAGCCCGATCGACATAGCTCGCCTTTCGAACACCTGCTTTGTTT GCCCTCACCATCCCTTGGCCAGATTCCGTCGGGTTCGACGCTTGGGTGGT AAAGCTCGACGAGGACTTCGACTTCGAGTGGGAAGTTCAGTTCGGGACAA TTGTGTACGACATACCCTCTAAGGTGGTGCTGGACAGCGACGACAACATC TACGTGATCGGGACCTCCGCGGACTACTCCAACATCACGTGTGAGCGCTC TCGGGCAACTCCGACCGTAATCTTGAGCGTGATTTTATGCGTACGGTACT CTGCTGTACGGACAAGACGCGGTAGAAAGTAGCAGCAGCTCGCGCGATGA GGAGAAAAACTTGGTAATGAACGGCAGCGCTTGTGTGCGCCTGTCAAAAA TGAGAATATTCACGGCCCGATAGTAGTACGAAAGCACATGAAACATATCA ATAGCGCTAGAAGAGGGTGGTGTATGACTCTTGATGGCGTAAAAAATGTA CCTTATTCAGCTAAAAAGTGTACCTTTTTCAGCTTCGTGCGCTTTATATC TTGAGGGGAGGAAAGTGTGTCGTTTCATTCGTTTTTTGTTTTGTTTTGTT TGACTCCGTTCAAGCCCCTCATGGGATATATATAAAGAAAGAGCGATTTA ATTTTGGGTTCGACTGGTTCAGTTTGGGTTGTCTGTTTGTGCGTGCGTTT AGGCTTTGCTTTGACTCCGCACCAAAAAAACAACAAAAAACAGAAACAGA ACTCACGCGACTAGAAAATTGATGTACCATTTCAAGCCTCGACGCGCGTA AGCTTGTGCGCAAAAATCGAGAATGGCATCCCCACGCCCCTTACCCCTCT CCATCCTACCGCCTTCCAATGAACATGAAACCTTGACCCGGGACGTTATT ATTGACTCCTCTTCTACCGAGTGATAATGGCAAAATGCAGCCTTTTTTGT AGTGCGTACCCCGTTCTTCAAAGTTATGCGTATTTGTTTTGTGGAAACCT TACCACATTACACCTACTTCCTGGTATAGTCTATTCCCGCTGTCGGCAAC AGCTAGCCACATGAAATACTCGAGAGCATTAATTACGAGTGTAGCCGGCC TGGTGTTCTCGTACGAAAAAAACTCGATACACCTTACCTACAAGACAGAG CACACTGTAAGAAAAAAAAAAGGGTACTCTGTAAAAAAAAAGGGTACTCT GTACTGCAGGGAAATTTTGTCGGATACGTAAGAAACGATTTCCTTTCTTA TCTGTACCCCTCCGAGGCGTTGACTGTTTGTCTGGTTTCGTAAGTGCATG TCGTCGCTGTAGCATATTAGTCTGGGAATGGTTTGGGCCTTATACCGTGT AATGGAAAGAGCGGTCTCGAGACCAAACAAAATTCCATGTGGTGTTTTTT TTCTTCTTTTAAATCTTTTGTATCGACCCAAACAAACGTTTTTTGCGAAT TGAACGAAATACTGCAGCTGCCGAAGAACAGGGAGAGATTCAGTCCATGT TCGTCTACAAGCTGGACCCATCGGATGGATCAACCTCGTGGAGCGTCACG ACCGACCTGGGCTACCTGGTGAGAGCACGGTCTTCGCCGCTTCAAGCAAA CATATACTCttTTTTTTTTTCAAGTTGCGACGTAACTCTTTTAGTAATTT TTATCCTCGTAAATAAATAAATAAATGTTACGGTCCTATTTTTCCTTTTG TTATATATATATGTTATATATATATATCTATATATATTTATTTTCCCCTA GATCATACCGTATAGTTTTTCAACCTTTTTTCTTGTGTACCACATTCTAC AAAACTCCATTTTTTTTTTTTTTTGCCGATTAGATAGACCCATCAAGTGC ACTCGAGGTTATTTTTATGTCCATCACCATCCCATCCCGACTGTGGCAAC TCAGGGATTATATGACCCACATCCCTCCCCGGCTCATCCCTACAAATTAC TTTTTTTCACCCTTTCTGCGATGCATGTTCAGCATTTTCATCAACAAAAG TTTTAACTGTGTTCGCTCATCTCGGGAGTCGTAGAACAAACGGTGAAAAT TGTTCGAGGAGAGCCCCAAGCGGCAAGCGAGAGAACGGTTTACTTCAAAA GTGGATTTATTTATATAGTTTATTCGTCGTTTTTCTTTTCACTTCACGAT CATCATTATGATGATCATAATTATAATTATAATCATAATTCTTATTCCTA TTCTTACTACTATATTATTATCGTCATTGTTGTTATTATTATCATTGTTA CTACTACTAAATTACTACATTTATTATTATTATTATTACGCATTATTTTA TCATTATTGTTACTAATACTAGATTATTATCATTATTATTATTATTATTA TTATTATTATTATTATTATTATCGTCATTATTACTACTACTACCTAAGTG TAATATTGTTACTATCATTATTATTACTATTACATCACCATTATTATCAT TATAATTATTATAAGTATGCCTTTCCCGATAAAATCCCCCTACCCTCTTT TTTAATATTTTCATCCCGCGCGAATCCCTCCTATTGTTAATATTAGTCAA TCAACAATGTTCCGAAATCGGATCCCTAGGCTTTAAGTTTTGTCGAGGTT TCGGATGACCCGTTCCCTCACCGACCTTTGGATTTCTCGACACATTCATG CCTAATCAATCAGGAGGATGAGTCAGCTGCCTACGGAGCCGTCTTGAGCG AGGACGAATCTGAGCTCTACGTGTCAGGAAATACCAAGGGGATCATAGGC GACTTCGACGGTGACGGTAAGACTTTGACGGTGACGGTAGCCACAGTCGT ACGCATGAAAGTACTGCTGCTGTACCGTGCTTTTTCTCCCCGAGCACCTC TTTCGCCATCACGAAAATTGACCCGTTCCTGGTAGAAGTTTTCTAAAATA AATATTAAGAAAAAAAAACTTGAAACAGGAAACAAAAAACTTGAAACTTG AAACAAAAACTTATCATTCGAAGGCCGCTCAGATGTGCGTTCCCTTTTTT GGGGGTGGATATTTTTTAAAGAGAGCGGTAGGATATTTTTTCGTTTTTGT TTTTAAAGAAAAATCTGAATGCACCTATAGACCTTCTGACCCGCCCCCGG TAGGGGAAAAAAAACCAAAACGTTTTGTTTTGGGTGTAATTGTTTGTGTA AGATTGTACACGTGACGGCGCCATCCCACCGTTTGCTGTCGTGCCAATCA GTCTAAAAGCTTGATATTAAGAGCGTGCTGTTTGTAATAATATTGTTATT TGCTCGACGTGGATTGCTTTCACCGATGGGGAGAATGCGCCATAATCAAC AAAATGTCGTGTGTGCTTTGCATTCGTGTTGGATTGTGTTGGAGGGTCTG TTGTGTCATGTGTGCTTGCTCTGCGAAAAAAAAACACATTCTGGGGCCCC CTAACCATTTCCATTCTCATCCACTATTACAGTACCAGATAACAAGTAGC ATAATAACATACTACCTAGAGTAACAGACACTAAATAATAGGACTATAGA CTAGAGCGATATCCATGCGCGCTTGGTTGGCAATCCTTGCTGGTAAGGTC TGCTGGACAGGTTTACTGGTTTTGCGTTGGCGTGAAGCCTATCAGTATAC CAGTATTGGGTAATTTGCGTGTGTGTATTGCTCGTCATGGGATGACGAAA CGTTACGATGCTCTTCTCAAACATAGAGATCTGGCCCAGCGTTCGGTTTG GGGTGTAGCTGTGTTGGGGTGGCTGATCGGGGGATCCGTGTAGACGTTGG ATCCAAGTGTGTTTTTAGGACCACCACAGAAAATGTTTTTGACCCGAGCG TGTCAAGCCTTCCTTCGATTTGAACAACGCACTGCTGTACTAGCAGTTTT ATCAAGAGTAACATCTGTAGTACACGCGGTGCTTGTTGCTGCGAAACGCG AGGGGGGGGTGCCTGCTGTACCCAGCATCCCCGCCATTTCCCCCGTCCTG AAGTCAAATTCTTGTCGTATCCGACACACCAACAATGCAGCAGCGATCCA GGCTCAAGCAGCGCCAGCAGCACTCCACAGTTCTCGCCAGTAAAATGCTC AGAGCCAGCCTACTGTACTGTATCCGTTGTTTGTACAGCAATTGCCCACG CGTCAAGGCTCAGTTTTTTTTTGCAGCTTGTTACTGCAGTACATAACACT ATTAATAAACCCATATTGTCTCTCGGATTCTTTTCGTCAAGCTGCCGTAA AAAATATATGAATAAAAACAAGCAAAACAACCAAAAAGATGCATGACTTC CATTTGGCGAATCTTGTCCCTCGTCCCTTTATCCGCGGGGTTTCCGCAGC CACGGATTCGCCCGAGCTGTTCCTTGTGAGCCTGGACGTGGACGACGGAG ACATCAACTGGGTCTGGCAGAGCGAGGCCAACGCGACGGCTTTCGGGACG GGGGGCGTGGTGCTGGCGGAAGACGGGTCTCCTATCGTCGGAGGCGTTGC CTTCGGAAACCAGTTCAACCTCACCTCCGATTACTGGGAGGTAAGCGAAA TAAAAAGAGTCGTACGGTAGTAATATTTAGGAAGTACAAGGTGTTATAGC AGCAGTGTTGAGTGTATGTAACACACTCCGGGAAAGGGGATACAAATCCC CAAATCCCCCTTTTTTATTTATTTATTTTTTGTGGCAGGTTCATCAATCG AAACAACTTTTGCCGTAACGTTGCGAGCATTTATTAAATTGCACATTACC GCGCAATCCGGCCCCGTCATCTACTACCCTATGTCATGCCATGCCACTTG CGTTGATCCTCCCAAGGGGGGGTGATCGATGATACCTATTACGAGAACCT CTAATCAGACACGACAAAGTGTGTGATGCCATGGGCAGCCTCTTTATCTC TTCGGTTCAGCATTTTGCTCGTTACGTTTGCACACCGCTGTTTAGGGAGT GATCGCGGTTATCAACCTGAGCTAGGCAAGCTGAGGCGAGACGTGTATTA ATAGTTTACGAGAGAAAATAAATACAAATAAATAAACGTGCAATAGTAGT TTTGACGTCACGACAGGAGTGTAGAAAAAAGCGTGTGGGAGCGGGGATTT TTCTCTCCCGAGAGGCGAGGGCAAGCTGTGGGGAGGGGGGCGTTCTCTGC GAACACTGCTTATTAAATACGGTATAACAACAATTTCTAGAAAGCTACGC ATTTGGAGGAAAACTAACGATAAATGGTGATGCTCGTGGTACTCGTGCGA CGACGGATTTTCTTCGCGTGGCAGGGAGGCAGCGGGGACATGATCGCGGT CAAAGTCGACATTGATACGCTGGAGGTGGTCAAGTACTTCAACGCCCCCG CCGCGTCGAACCTGACGGAGGAGCGGCCGATGGCGATGGTGAAGGTTGAT GACGTGGACGACGGCGTGTTTCTGATTGGTTACGAGGACGGTGACTTCGA GGACGAGGACGTTGAACCGAGCGGTGAGCGTCATCGTGGCATGACTTTCA CCATCATCGATATAAAACTGCCTCCGATACTTGCGGTATCGTTCATGTCC ATTTTTTTTTTTTTTTTTTTTTTGAATCACACTTACTAGCCGATGGGCCT CTATTACCATCCTGCCTGTGGTCACAAAGGATCTTCCCATCTCTCCCCGG TTCACGCCTTGCAATTTTTATCGCGATGCAAGTTCAGCACTCTTACAACT CGTCAGCCAATGGTTGAATTTTACTTACTCACGTTCCCACGCTTTCCGTT ACGAAAGAAATAACACAAATTCTGCTAAAGCTAAGAATCGAACTCACGAC TTCCGCACTAGCAGGTATGCAGGTTACCTACTAGACCACTCGGGCGAGAT ACCAATATACCCTTTACTGGAACTACCTTGAGGACTACTGGCCCTGCGCC GGCGGCCTCTCGGCAGCGAAGGCCATCGGTACGCAATTGCGTGACCTGAT GGCGGTTGACGGCATGAATGATAAATGGGCGCCGCCGCAGAAAGCGGGGA GAATCTCGTAAGTAAGCATCAGATTCAGCCTGAGGACATTCTCGGGCGCG AACGGGACGGGGAAACAAACATTTTTCCCTGTTCAGTTGACCACGGCAGG CGCAAACCACGTCGGGCCCACAATTCGAGACAAAGCCTAGCCGCGTCATC AGAGATCCCCCAACACAATCGTAAACCGCGTCACGATGATGACTTTGACC AGAGATTCAAACACGCTCTGAACGGCCTCACGACGATAAAACCGCGTCAC GACGATAACCTTGATTCGGTGGGGGGGGCGACAGTACTGCATATAATACA ATTACAGCGTCTGGTGCCTGAATCGCTGGTTGCAGCCGAAAACATCCCTC CGCAACCGAAATTATCTTTCCGCGTGTATCTTGTGGCCTTCCTGCTTGAG ACAAGTGTCTTTTTGCTTAGCCCCCTGGCCTGCTCCTGTGATAACACGCA ATTTACTTGCTCGACCCCGTAACCGTCGCTCGCTCACGTTGGTAAGGCCA ACCTTTATGGGAAACAGAAACGACATGAAAATACAGAAATGTGAAATTTC TGTGGCGAATTTTTTGTAAACGTGGCGCTATGGGCCCCGTGCCGCAGAAA TGTAGCCCTACAGAAATGGCGAATTTCTGTGGGAGGTTATTTTTCTCTTC CCACATACAGAAATGAGGCTCATTTCTGTCTGTGGCTCGACAAGTTTAGT TTGCCGCAGAAATGATTCACGCCTTCCAAGAACGATTGGGAGGTCGGGAC TGTAGCATCCTCCTATCAAATATCGGCAAAGAAGAGCTCGCGAGTGCTGT TGTACGATGGGTGCTGAGCAGCAGTAGTAGTAGTTGTGCGATGATCGCCG GAGCAGCAGATTTGGAGGAATTTTATAGAATCTGTTGAGGTGATGGGCCC GGGCAAGCAGATCTGGAGGAAATTTATAAAAGCTGTTGAGGTGATGGGCC TGGACAAGCTGATCGCCGGCGGCGGGGGCGGTTGAATGGGTGGCGCCGGA GATCAACCAAGCAGGGACGGGCTGCGTGTCACGAGCGTCCGACGGCTCGC TATCGAAACGATGTCGCTCTGCCCACTCTATTTGCGATGTACTCGTAATT AAGTACTAAACGACCCTGTCTCGCCGGACTAAATTCTCGGGCACAAACGC GGAGAGGGAAATATTATTTTTCCCTGTTCAGTTGACCACGAGCAGGACTG GCAACCTTACCCGGTTGATCCATACTCGCCATGTGTACATACTTGCACCT GTCTTTTTGCGGTGATGGGTGGCCGAAAATGCCGGGGTTAACCCGATATG CTCCCCGTTCTTTTCTGTATTTGACTATGTCCCATAAACGACCAACTACA GTTTTTCCCCACGGATTTTTTGGCCACAGAAATGACAAATTTCTGTATTT GCGTTTCTGTATTTTGCGTTTCCCATAAAGGTTGGCCTAACCGAAACGCC TCCCTCCGCCAACCACCCTATGTAAAACACGCTATCTCCCCCAGACGACG ATTACAACTACTTGGTCCTCAAGGTCGAGTTAGACGATCTTCCGGAGGAG GATGACGATAGCGACAGCGAGTGGGGCTTCACTTATTATTACTGTGGGGC GGCCGTGTTTGGTGTGGGCATCGTTCTCTTCGCGTTCGCCTACAAGTGTG CGAAATCGTCGCAGGTGTGTGTGTGTGTATGTTTGTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig689:45888..56475+

>mRNA_F-serratus_M_contig689.17948.1 ID=mRNA_F-serratus_M_contig689.17948.1|Name=mRNA_F-serratus_M_contig689.17948.1|organism=Fucus serratus male|type=CDS|length=2502bp|location=Sequence derived from alignment at F-serratus_M_contig689:45888..56475+ (Fucus serratus male)
ATGTTCGACCCTGATGATCTTGCGAAAGAGGCAGGTGTCCAGTACGGGGG
CGACGGCGACGATACGCTTATGGGCATGGCCGCGGGCACGATTGACATCG
TCATCGTGGGGTCGACCTATTCGGACGACGACCACCTGTTCGGTCTGGAC
ACGCCAAATGTTCGACCCTGATGATCTTGCGAAAGAGGCAGGTGTCCAGT
ACGGGGGCGACGGCGACGATACGCTTATGGGCATGGCCGCGGGCACGATT
GACATCGTCATCGTGGGGTCGACCTATTCGGACGACGACCACCTGTTCGG
TCTGGACACGCCAACCGGCGAGATGGACTGGTACATCGCAAAGCTAGACC
GGGACAATTTGTCGGTCGTGGATGATTATGTATATGTCAACGGCACGACA
AACGACGACCAGGTTGGTGGTTGGCATCCTATAGCAGGAGTTTTTCGGGG
ACCCGGCGAGATGGACTGGTACATCGCAAAGCTAGACCGGGACAATTTGT
CGGTCGTGGATGATTATGTATATGTCAACGGCACGACAAACGACGACCAG
GTTGGTGGTTGGCATCCTATAGCAGGAGTTTTTCGGGGACATTCCGTCGG
GTTCGACGCTTGGGTGGTAAAGCTCGACGAGGACTTCGACTTCGAGTGGG
AAGTTCAGTTCGGGACAATTGTGTACGACATACCCTCTAAGGTGGTGCTG
GACAGCGACGACAACATCTACGTGATCGGGACCTCCGCGGACTACTCCAA
CATCACGTATTCCGTCGGGTTCGACGCTTGGGTGGTAAAGCTCGACGAGG
ACTTCGACTTCGAGTGGGAAGTTCAGTTCGGGACAATTGTGTACGACATA
CCCTCTAAGGTGGTGCTGGACAGCGACGACAACATCTACGTGATCGGGAC
CTCCGCGGACTACTCCAACATCACGTCTGCCGAAGAACAGGGAGAGATTC
AGTCCATGTTCGTCTACAAGCTGGACCCATCGGATGGATCAACCTCGTGG
AGCGTCACGACCGACCTGGGCTACCTGCTGCCGAAGAACAGGGAGAGATT
CAGTCCATGTTCGTCTACAAGCTGGACCCATCGGATGGATCAACCTCGTG
GAGCGTCACGACCGACCTGGGCTACCTGGAGGATGAGTCAGCTGCCTACG
GAGCCGTCTTGAGCGAGGACGAATCTGAGCTCTACGTGTCAGGAAATACC
AAGGGGATCATAGGCGACTTCGACGGTGACGGAGGATGAGTCAGCTGCCT
ACGGAGCCGTCTTGAGCGAGGACGAATCTGAGCTCTACGTGTCAGGAAAT
ACCAAGGGGATCATAGGCGACTTCGACGGTGACGCCACGGATTCGCCCGA
GCTGTTCCTTGTGAGCCTGGACGTGGACGACGGAGACATCAACTGGGTCT
GGCAGAGCGAGGCCAACGCGACGGCTTTCGGGACGGGGGGCGTGGTGCTG
GCGGAAGACGGGTCTCCTATCGTCGGAGGCGTTGCCTTCGGAAACCAGTT
CAACCTCACCTCCGATTACTGGGAGCCACGGATTCGCCCGAGCTGTTCCT
TGTGAGCCTGGACGTGGACGACGGAGACATCAACTGGGTCTGGCAGAGCG
AGGCCAACGCGACGGCTTTCGGGACGGGGGGCGTGGTGCTGGCGGAAGAC
GGGTCTCCTATCGTCGGAGGCGTTGCCTTCGGAAACCAGTTCAACCTCAC
CTCCGATTACTGGGAGGGAGGCAGCGGGGACATGATCGCGGTCAAAGTCG
ACATTGATACGCTGGAGGTGGTCAAGTACTTCAACGCCCCCGCCGCGTCG
AACCTGACGGAGGAGCGGCCGATGGCGATGGTGAAGGTTGATGACGTGGA
CGACGGCGTGTTTCTGATTGGTTACGAGGACGGTGACTTCGAGGACGAGG
ACGTTGAACCGAGCGGGAGGCAGCGGGGACATGATCGCGGTCAAAGTCGA
CATTGATACGCTGGAGGTGGTCAAGTACTTCAACGCCCCCGCCGCGTCGA
ACCTGACGGAGGAGCGGCCGATGGCGATGGTGAAGGTTGATGACGTGGAC
GACGGCGTGTTTCTGATTGGTTACGAGGACGGTGACTTCGAGGACGAGGA
CGTTGAACCGAGCGACGACGATTACAACTACTTGGTCCTCAAGGTCGAGT
TAGACGATCTTCCGGAGGAGGATGACGATAGCGACAGCGAGTGGGGCTTC
ACTTATTATTACTGTGGGGCGGCCGTGTTTGGTGTGGGCATCGTTCTCTT
CGCGTTCGCCTACAAGTGTGCGAAATCGTCGCAGGTGTGTGTGTGTGTAT
GTTTGTAAACGACGATTACAACTACTTGGTCCTCAAGGTCGAGTTAGACG
ATCTTCCGGAGGAGGATGACGATAGCGACAGCGAGTGGGGCTTCACTTAT
TATTACTGTGGGGCGGCCGTGTTTGGTGTGGGCATCGTTCTCTTCGCGTT
CGCCTACAAGTGTGCGAAATCGTCGCAGGTGTGTGTGTGTGTATGTTTGT
AA
back to top