mRNA_F-serratus_M_contig689.17949.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig689.17949.1
Unique NamemRNA_F-serratus_M_contig689.17949.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig689.17949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig689contigF-serratus_M_contig689:75960..77290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size898
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig689.17949.1prot_F-serratus_M_contig689.17949.1Fucus serratus malepolypeptideF-serratus_M_contig689 75960..76799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932101.6537426-CDS-F-serratus_M_contig689:75959..760261622932101.6537426-CDS-F-serratus_M_contig689:75959..76026Fucus serratus maleCDSF-serratus_M_contig689 75960..76026 +
1690964147.4926422-CDS-F-serratus_M_contig689:75959..760261690964147.4926422-CDS-F-serratus_M_contig689:75959..76026Fucus serratus maleCDSF-serratus_M_contig689 75960..76026 +
1622932101.6700275-CDS-F-serratus_M_contig689:76416..767991622932101.6700275-CDS-F-serratus_M_contig689:76416..76799Fucus serratus maleCDSF-serratus_M_contig689 76417..76799 +
1690964147.5051792-CDS-F-serratus_M_contig689:76416..767991690964147.5051792-CDS-F-serratus_M_contig689:76416..76799Fucus serratus maleCDSF-serratus_M_contig689 76417..76799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932101.6916113-UTR-F-serratus_M_contig689:76799..768321622932101.6916113-UTR-F-serratus_M_contig689:76799..76832Fucus serratus maleUTRF-serratus_M_contig689 76800..76832 +
1690964147.5182364-UTR-F-serratus_M_contig689:76799..768321690964147.5182364-UTR-F-serratus_M_contig689:76799..76832Fucus serratus maleUTRF-serratus_M_contig689 76800..76832 +
1622932101.714401-UTR-F-serratus_M_contig689:76877..772901622932101.714401-UTR-F-serratus_M_contig689:76877..77290Fucus serratus maleUTRF-serratus_M_contig689 76878..77290 +
1690964147.528268-UTR-F-serratus_M_contig689:76877..772901690964147.528268-UTR-F-serratus_M_contig689:76877..77290Fucus serratus maleUTRF-serratus_M_contig689 76878..77290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig689.17949.1

>prot_F-serratus_M_contig689.17949.1 ID=prot_F-serratus_M_contig689.17949.1|Name=mRNA_F-serratus_M_contig689.17949.1|organism=Fucus serratus male|type=polypeptide|length=150bp
GNGGRRGGSREGKGSKNVCGGGGYGRLRLLVVQNNVAFKGATRVLILDRI
AHVQKLGRHNLLSAKRLTTTFDAPMRVYRVTATIRPCFGRKTLVFCFLHP
ETGLLKIKAHRRADIRESQSPLTIAQSTVTARANPRHVMKFHRLLDHPS*
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mRNA from alignment at F-serratus_M_contig689:75960..77290+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig689.17949.1 ID=mRNA_F-serratus_M_contig689.17949.1|Name=mRNA_F-serratus_M_contig689.17949.1|organism=Fucus serratus male|type=mRNA|length=1331bp|location=Sequence derived from alignment at F-serratus_M_contig689:75960..77290+ (Fucus serratus male)
GGAAATGGCGGCAGGAGGGGTGGCAGTCGTGAAGGCAAAGGCAGTAAAAA
TGTTTGCGGAGGCGGTGGTAAGCAAAGTAAAAGTAGCAATATTTCCGAAT
CCGGCGATAAGACCGCTCGCCTCGACTGTTATTTCTGTCTAGGAACCCAC
AAAACCTCGAAATGCCCAAACATCTCTGCCTCTGTAACGGGGCCGGCCAC
TTCCAACTCCCAGCATGGCGTATTTTTGGGTAGTACCCGCACAAACCTTG
GGGCTAGATTGCTCGTCGCCACAAGCCCTCGCCCGGCTTTGGCCGCACGC
GGCGCCCCGCGCGAGTGGCATGAAGATGAGTACTGGGTGACAGACAGTGG
TGCTATCGAAAGTATGACCCAGGACTTGTCCAATCTTGAAGATTATACGC
CGGTCCCCCCAAGAGATGAGGTAGAAAGCGCTAGCGTGGTTTTTCTCCCT
GTTGCAGGATATGGGCGCCTACGACTCCTGGTGGTCCAAAATAACGTCGC
CTTCAAAGGAGCAACGCGCGTGCTGATTCTTGACCGCATTGCTCACGTCC
AAAAACTAGGGCGCCACAACCTGCTTTCAGCAAAACGACTCACGACAACG
TTCGACGCTCCGATGCGCGTCTACCGAGTCACCGCTACCATTCGACCCTG
TTTCGGCCGCAAGACGCTCGTTTTCTGCTTCTTACACCCAGAAACTGGCC
TCCTCAAAATCAAGGCCCACCGTCGCGCTGATATAAGGGAGTCCCAATCG
CCGCTAACGATAGCACAATCGACTGTGACGGCAAGGGCGAACCCCCGGCA
CGTCATGAAGTTTCATAGACTCCTCGACCACCCAAGCTAGGAGATCACGC
GCGAAACGGATCGCATGTCGGGTGTCCCGCTAACGGGAACGTGGAGCCCA
TGCGTGCAGTTCTCGGAGTCCAGGATGCGACGTTACGCTGTGCCAAATCG
ACCGAAAGCCACACTAATGAGCGCGCGGAGTGATTCTTCATCGACATCAC
AGGTCCCTTTCACGTGACTCTCTCGGCGGCTACCGATACGCGATGCTGTG
CGTGGACGACTGCACCCGCTACAAGTTCATTCGATTCCTCAAGCATAAAA
GCGACGCTGAAAAAGAGCTTCGCGATTTCGATCGATGGTGGCGGCTAGGG
CGACCCAAACCCGAGCACCAGTTGGCGCCACGCGGAGCCAAGCGCATTGT
GCTCGGCATCGACTCGAACTACTCGCGGCAAATCTTCCGCGTCCGCAACC
TCACCACTGGCCAAGTTACCATGCGTCAGGCCAGGCACCTCATAGCCGAC
ACCTGAGAGACAGTTCCCAGGAACACTGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig689:75960..77290+

>mRNA_F-serratus_M_contig689.17949.1 ID=mRNA_F-serratus_M_contig689.17949.1|Name=mRNA_F-serratus_M_contig689.17949.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig689:75960..77290+ (Fucus serratus male)
GGAAATGGCGGCAGGAGGGGTGGCAGTCGTGAAGGCAAAGGCAGTAAAAA
TGTTTGCGGAGGCGGTGGGAAATGGCGGCAGGAGGGGTGGCAGTCGTGAA
GGCAAAGGCAGTAAAAATGTTTGCGGAGGCGGTGGATATGGGCGCCTACG
ACTCCTGGTGGTCCAAAATAACGTCGCCTTCAAAGGAGCAACGCGCGTGC
TGATTCTTGACCGCATTGCTCACGTCCAAAAACTAGGGCGCCACAACCTG
CTTTCAGCAAAACGACTCACGACAACGTTCGACGCTCCGATGCGCGTCTA
CCGAGTCACCGCTACCATTCGACCCTGTTTCGGCCGCAAGACGCTCGTTT
TCTGCTTCTTACACCCAGAAACTGGCCTCCTCAAAATCAAGGCCCACCGT
CGCGCTGATATAAGGGAGTCCCAATCGCCGCTAACGATAGCACAATCGAC
TGTGACGGCAAGGGCGAACCCCCGGCACGTCATGAAGTTTCATAGACTCC
TCGACCACCCAAGCTAGGATATGGGCGCCTACGACTCCTGGTGGTCCAAA
ATAACGTCGCCTTCAAAGGAGCAACGCGCGTGCTGATTCTTGACCGCATT
GCTCACGTCCAAAAACTAGGGCGCCACAACCTGCTTTCAGCAAAACGACT
CACGACAACGTTCGACGCTCCGATGCGCGTCTACCGAGTCACCGCTACCA
TTCGACCCTGTTTCGGCCGCAAGACGCTCGTTTTCTGCTTCTTACACCCA
GAAACTGGCCTCCTCAAAATCAAGGCCCACCGTCGCGCTGATATAAGGGA
GTCCCAATCGCCGCTAACGATAGCACAATCGACTGTGACGGCAAGGGCGA
ACCCCCGGCACGTCATGAAGTTTCATAGACTCCTCGACCACCCAAGCTAG
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