mRNA_F-serratus_M_contig686.17926.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 205 bits (522), Expect = 1.780e-60 Identity = 97/193 (50.26%), Postives = 133/193 (68.91%), Query Frame = 1
Query: 19 TATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEALGGYKHVSTISDENTRWTEIYLLKSKDGALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLADSGLSTFLWEE 597
+A LWHR +G ++ +SLD+L+KV NGV ++G + CDVCAV S+Q+ HPK A+ RPFQLV T LMG F+P ALGG+ ++ D++ +W E++L+K K + A Q F Q + P + +E +RA+KGGE+ F YC G+ L +ASTNTPQ+IG +ER+G TLA MVRC+LADSGL FLWEE
Sbjct: 265 SAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEE 457
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 187 bits (474), Expect = 3.280e-51 Identity = 92/193 (47.67%), Postives = 123/193 (63.73%), Query Frame = 1
Query: 19 TATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEALGGYKHVSTISDENTRWTEIYLLKSKDGALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLADSGLSTFLWEE 597
+A LWHR MG +N KSLD+L+K NNGV V DC CA+ KS Q+ HPK A V+RPFQLVF +G FTP ALGG+K+ + D+ T+W EI L+K K ++ + F + +P+G + LR + G EF +F+ Y G+ L++AS NTPQQIG +ER G T+ +VRC+LADS L FLW E
Sbjct: 525 SANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWWE 717
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 184 bits (467), Expect = 2.830e-50 Identity = 89/193 (46.11%), Postives = 122/193 (63.21%), Query Frame = 1
Query: 19 TATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEALGGYKHVSTISDENTRWTEIYLLKSKDGALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLADSGLSTFLWEE 597
TA LWHR MG +N KSLD+L++ +G+ + G V DC C + KS Q+ HPK A V PFQLVF +G FTP ALGG+K+ + D++T+W E+ L+K K ++ A + F + IP + LRA+KG EF ++ YC G+ L++AS NTP QIG +ER G T+ +VRCMLADS L + LW E
Sbjct: 572 TADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGE 764
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 184 bits (467), Expect = 2.980e-50 Identity = 89/193 (46.11%), Postives = 122/193 (63.21%), Query Frame = 1
Query: 19 TATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEALGGYKHVSTISDENTRWTEIYLLKSKDGALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLADSGLSTFLWEE 597
TA LWHR MG +N KSLD+L++ +G+ + G V DC C + KS Q+ HPK A V PFQLVF +G FTP ALGG+K+ + D++T+W E+ L+K K ++ A + F + IP + LRA+KG EF ++ YC G+ L++AS NTP QIG +ER G T+ +VRCMLADS L + LW E
Sbjct: 694 TADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGE 886
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 184 bits (467), Expect = 2.990e-50 Identity = 89/193 (46.11%), Postives = 122/193 (63.21%), Query Frame = 1
Query: 19 TATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEALGGYKHVSTISDENTRWTEIYLLKSKDGALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLADSGLSTFLWEE 597
TA LWHR MG +N KSLD+L++ +G+ + G V DC C + KS Q+ HPK A V PFQLVF +G FTP ALGG+K+ + D++T+W E+ L+K K ++ A + F + IP + LRA+KG EF ++ YC G+ L++AS NTP QIG +ER G T+ +VRCMLADS L + LW E
Sbjct: 572 TADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGE 764
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 179 bits (454), Expect = 9.340e-49 Identity = 88/193 (45.60%), Postives = 121/193 (62.69%), Query Frame = 1
Query: 19 TATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEALGGYKHVSTISDENTRWTEIYLLKSKDGALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLADSGLSTFLWEE 597
+A LWHR MG +N KSLD+L+K NGV + G V DC VC + KS Q+ HPK V RPFQ V +G FTP ALGG+K+ + D+ T+W EI L+K + ++ + F + +P+G + LR + G EF +F+ YC G+ L++AS NTPQQ+G +ER G T+ +VRC+LADS L FLW E
Sbjct: 285 SADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQQMGANERAGRTVLNVVRCLLADSTLPNFLWGE 477
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 174 bits (441), Expect = 8.900e-47 Identity = 86/194 (44.33%), Postives = 117/194 (60.31%), Query Frame = 1
Query: 19 TATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEALGGYKHVSTISDENTRWTEIYLLKSKDG-ALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLADSGLSTFLWEE 597
TA LWHR MG +N KSLD+L++ +G+ + G V DC C + KS Q+ HPK A V PFQLVF G FT LGG+K+ + D++T+W E+ L+K K ++ + F + IP + LRA KG EF ++ YC G+ L++AS NTP QIG +ER G T+ +VRCMLADS L + LW E
Sbjct: 477 TADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGE 670
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 168 bits (426), Expect = 6.530e-45 Identity = 85/193 (44.04%), Postives = 118/193 (61.14%), Query Frame = 1
Query: 19 TATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEALGGYKHVSTISDENTRWTEIYLLKSKDGALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLADSGLSTFLWEE 597
+A LWHR MG +N K+LD+L+K NGV + G V C VC + KS Q+ HPK A V RPFQ +G F P ALGG K+ + D+ T+W EI L+K + ++ + F + +P+G + LR ++G EF +F+ YC G+ L++AS N PQQIG +ER G T+ +VRC+LADS L FLW E
Sbjct: 45 SADLWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGE 234
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE) HSP 1 Score: 166 bits (421), Expect = 3.140e-44 Identity = 81/199 (40.70%), Postives = 117/199 (58.79%), Query Frame = 1
Query: 1 AMEAAATATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEALGGYKHVSTISDENTRWTEIYLLKSKDGALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLADSGLSTFLWEE 597
A A A WHRW+ LN +S++LL+K +NGV F ++ CD+CA+ KSRQ HP+ N+ P QLV+T MG+ TP A GG+ +VS +D + EIYLLK+ + A ++ +A P G +E +R GGE + N+F Y + + ++YA+TNTPQQ G+SER G TL + R ++ D LW E
Sbjct: 301 ACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSERDGQTLTTITRYLMKDGAFPPTLWRE 499
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 153 bits (387), Expect = 3.220e-43 Identity = 75/186 (40.32%), Postives = 111/186 (59.68%), Query Frame = 1
Query: 19 TATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSRQRTHPKTANQHVQRPFQLVFTYLMGQFTPEAL---GGYKHVSTISDENTRWTEIYLLKSKDGALHAFQSFVQLMAIPSGVCVERLRANKGGEFIGNDFKDYCTQTGVMLKYASTNTPQQIGMSERVGATLAAMVRCMLAD 567
+A WHR +G LN +SLD+L+K GV + ++ C VC + K +Q HPK + + + RP QLV MG P A G + + I+D+ T+ E+YLL+ K A ++ +A G +E +R +KGGE G++F+DYC + + L+YA+TNTPQQIG+SE G TLA + RC+L D
Sbjct: 41 SADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTLAGVTRCLLKD 226 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig686.17926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig686.17926.1 >prot_F-serratus_M_contig686.17926.1 ID=prot_F-serratus_M_contig686.17926.1|Name=mRNA_F-serratus_M_contig686.17926.1|organism=Fucus serratus male|type=polypeptide|length=199bp MEAAATATLWHRWMGLLNRKSLDLLKKVNNNGVSFDGTVLDCDVCAVRKSback to top mRNA from alignment at F-serratus_M_contig686:316264..316863- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig686.17926.1 ID=mRNA_F-serratus_M_contig686.17926.1|Name=mRNA_F-serratus_M_contig686.17926.1|organism=Fucus serratus male|type=mRNA|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig686:316264..316863- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig686:316264..316863- >mRNA_F-serratus_M_contig686.17926.1 ID=mRNA_F-serratus_M_contig686.17926.1|Name=mRNA_F-serratus_M_contig686.17926.1|organism=Fucus serratus male|type=CDS|length=1194bp|location=Sequence derived from alignment at F-serratus_M_contig686:316264..316863- (Fucus serratus male)back to top |