mRNA_F-serratus_M_contig685.17911.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig685.17911.1
Unique NamemRNA_F-serratus_M_contig685.17911.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig685.17911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig685contigF-serratus_M_contig685:112628..113493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size606
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932095.0823684-CDS-F-serratus_M_contig685:112629..1127281622932095.0823684-CDS-F-serratus_M_contig685:112629..112728Fucus serratus maleCDSF-serratus_M_contig685 112630..112728 -
1690964144.3847122-CDS-F-serratus_M_contig685:112629..1127281690964144.3847122-CDS-F-serratus_M_contig685:112629..112728Fucus serratus maleCDSF-serratus_M_contig685 112630..112728 -
1622932095.098712-CDS-F-serratus_M_contig685:112989..1134931622932095.098712-CDS-F-serratus_M_contig685:112989..113493Fucus serratus maleCDSF-serratus_M_contig685 112990..113493 -
1690964144.400751-CDS-F-serratus_M_contig685:112989..1134931690964144.400751-CDS-F-serratus_M_contig685:112989..113493Fucus serratus maleCDSF-serratus_M_contig685 112990..113493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig685.17911.1prot_F-serratus_M_contig685.17911.1Fucus serratus malepolypeptideF-serratus_M_contig685 112630..113493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig685.17911.1

>prot_F-serratus_M_contig685.17911.1 ID=prot_F-serratus_M_contig685.17911.1|Name=mRNA_F-serratus_M_contig685.17911.1|organism=Fucus serratus male|type=polypeptide|length=201bp
GIARRFNNLQREATTRGAQSLIDLRATIEEPNAVPVRNTFRGRSRPRSSG
ACVSQADVPKTGGGGCRPSGGGIDSPFLVGARAAQRRRDEGLTAVRRPPL
IGKGLPSATQISRGLAGSAKRCQLAEPKMPKDPRIMSSRLNRGVPFELGA
DAEQDFAAWVARRHELLQDLWLKMHAGENFTTMKGDIAQLLRLYRSANLR
V
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mRNA from alignment at F-serratus_M_contig685:112628..113493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig685.17911.1 ID=mRNA_F-serratus_M_contig685.17911.1|Name=mRNA_F-serratus_M_contig685.17911.1|organism=Fucus serratus male|type=mRNA|length=866bp|location=Sequence derived from alignment at F-serratus_M_contig685:112628..113493- (Fucus serratus male)
GGAATTGCACGAAGGTTCAACAATCTGCAAAGGGAGGCTACCACGAGAGG
CGCGCAGTCACTGATCGACCTGAGAGCCACCATCGAGGAACCGAATGCAG
TACCGGTAAGAAATACGTTTCGTGGCAGATCGCGCCCAAGATCATCGGGA
GCTTGCGTGTCGCAAGCGGACGTACCGAAGACCGGAGGAGGAGGCTGCCG
ACCTAGCGGTGGTGGGATCGACTCTCCTTTCCTAGTGGGAGCACGAGCAG
CGCAACGGCGTCGAGATGAAGGCTTAACTGCAGTCAGACGACCACCTTTG
ATCGGAAAAGGACTTCCGTCCGCGACGCAAATCAGTCGTGGGCTAGCGGG
GAGCGCAAAGCGGTGCCAGTTAGCGGAACCGAAAATGCCTAAGGACCCGA
GGATAATGAGTTCGAGACTCAATCGCGGGGTCCCTTTTGAGCTCGGAGCT
GATGCGGAGCAAGACTTCGCAGCCTGGGTAGCGAGACGCCATGAATTGCT
TCAGGTAGGCTTACTTATATTTTTATCTATTATGCAAGAGGTGTCGGGCG
TCCTCGTCGGAATGTAAGCCCAGCACCCGGGGATGTTTCCGGGGATCCTT
GGTCGAACGACCGCATATTATGCTATAATCGATGTATCTTGTTCATCGTA
ATGACATCACTGGGGGAAGGGAGGGGGCTCGCGGTATGAAAAGTGGCTAA
CAACAGTTCACTGTTTTCCGCCGCTTTTTCCTGCCTCTCGATTTTCAAAA
CTGATGTATCAAAAGGACCTGTGGCTAAAAATGCATGCCGGAGAAAATTT
CACCACAATGAAGGGTGACATTGCCCAGCTTCTCCGCCTCTATCGTTCCG
CGAATCTCCGAGTGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig685:112628..113493-

>mRNA_F-serratus_M_contig685.17911.1 ID=mRNA_F-serratus_M_contig685.17911.1|Name=mRNA_F-serratus_M_contig685.17911.1|organism=Fucus serratus male|type=CDS|length=1206bp|location=Sequence derived from alignment at F-serratus_M_contig685:112628..113493- (Fucus serratus male)
GGAATTGCACGAAGGTTCAACAATCTGCAAAGGGAGGCTACCACGAGAGG
CGCGCAGTCACTGATCGACCTGAGAGCCACCATCGAGGAACCGAATGCAG
TACCGGTAAGAAATACGTTTCGTGGCAGATCGCGCCCAAGATCATCGGGA
GCTTGCGTGTCGCAAGCGGACGTACCGAAGACCGGAGGAGGAGGCTGCCG
ACCTAGCGGTGGTGGGATCGACTCTCCTTTCCTAGTGGGAGCACGAGCAG
CGCAACGGCGTCGAGATGAAGGCTTAACTGCAGTCAGACGACCACCTTTG
ATCGGAAAAGGACTTCCGTCCGCGACGCAAATCAGTCGTGGGCTAGCGGG
GAGCGCAAAGCGGTGCCAGTTAGCGGAACCGAAAATGCCTAAGGACCCGA
GGATAATGAGTTCGAGACTCAATCGCGGGGTCCCTTTTGAGCTCGGAGCT
GATGCGGAGCAAGACTTCGCAGCCTGGGTAGCGAGACGCCATGAATTGCT
TCAGGGAATTGCACGAAGGTTCAACAATCTGCAAAGGGAGGCTACCACGA
GAGGCGCGCAGTCACTGATCGACCTGAGAGCCACCATCGAGGAACCGAAT
GCAGTACCGGTAAGAAATACGTTTCGTGGCAGATCGCGCCCAAGATCATC
GGGAGCTTGCGTGTCGCAAGCGGACGTACCGAAGACCGGAGGAGGAGGCT
GCCGACCTAGCGGTGGTGGGATCGACTCTCCTTTCCTAGTGGGAGCACGA
GCAGCGCAACGGCGTCGAGATGAAGGCTTAACTGCAGTCAGACGACCACC
TTTGATCGGAAAAGGACTTCCGTCCGCGACGCAAATCAGTCGTGGGCTAG
CGGGGAGCGCAAAGCGGTGCCAGTTAGCGGAACCGAAAATGCCTAAGGAC
CCGAGGATAATGAGTTCGAGACTCAATCGCGGGGTCCCTTTTGAGCTCGG
AGCTGATGCGGAGCAAGACTTCGCAGCCTGGGTAGCGAGACGCCATGAAT
TGCTTCAGGACCTGTGGCTAAAAATGCATGCCGGAGAAAATTTCACCACA
ATGAAGGGTGACATTGCCCAGCTTCTCCGCCTCTATCGTTCCGCGAATCT
CCGAGTGGACCTGTGGCTAAAAATGCATGCCGGAGAAAATTTCACCACAA
TGAAGGGTGACATTGCCCAGCTTCTCCGCCTCTATCGTTCCGCGAATCTC
CGAGTG
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