mRNA_F-serratus_M_contig1237.1794.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1237.1794.1
Unique NamemRNA_F-serratus_M_contig1237.1794.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1237.1794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1237contigF-serratus_M_contig1237:226430..226992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.4291306-CDS-F-serratus_M_contig1237:226429..2268371622929156.4291306-CDS-F-serratus_M_contig1237:226429..226837Fucus serratus maleCDSF-serratus_M_contig1237 226430..226837 +
1690962727.5413675-CDS-F-serratus_M_contig1237:226429..2268371690962727.5413675-CDS-F-serratus_M_contig1237:226429..226837Fucus serratus maleCDSF-serratus_M_contig1237 226430..226837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.4407415-UTR-F-serratus_M_contig1237:226837..2269921622929156.4407415-UTR-F-serratus_M_contig1237:226837..226992Fucus serratus maleUTRF-serratus_M_contig1237 226838..226992 +
1690962727.552168-UTR-F-serratus_M_contig1237:226837..2269921690962727.552168-UTR-F-serratus_M_contig1237:226837..226992Fucus serratus maleUTRF-serratus_M_contig1237 226838..226992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1237.1794.1prot_F-serratus_M_contig1237.1794.1Fucus serratus malepolypeptideF-serratus_M_contig1237 226430..226837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1237.1794.1

>prot_F-serratus_M_contig1237.1794.1 ID=prot_F-serratus_M_contig1237.1794.1|Name=mRNA_F-serratus_M_contig1237.1794.1|organism=Fucus serratus male|type=polypeptide|length=136bp
GSKISAGFGTLPGLRFWLKNASIEELWYNLSHRVGGLLQFKPDTYLSFSD
RPQGGCGSGAVVFFVYPALRIHVNNTLTPEASGPFSCQPLPYISCLHETL
GYTLRLAWVLRGRGNCHRPWHRSRLTHLGKARFLV*
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mRNA from alignment at F-serratus_M_contig1237:226430..226992+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1237.1794.1 ID=mRNA_F-serratus_M_contig1237.1794.1|Name=mRNA_F-serratus_M_contig1237.1794.1|organism=Fucus serratus male|type=mRNA|length=563bp|location=Sequence derived from alignment at F-serratus_M_contig1237:226430..226992+ (Fucus serratus male)
GGGAGCAAAATCTCCGCAGGATTCGGTACACTACCGGGGTTGCGATTTTG
GCTCAAAAACGCCTCCATCGAGGAGTTGTGGTATAATCTGTCACATAGAG
TAGGCGGACTACTGCAGTTTAAGCCCGATACTTATCTTTCATTTTCCGAT
CGGCCACAAGGAGGGTGTGGTTCAGGTGCAGTTGTCTTCTTTGTCTACCC
CGCGTTACGTATTCACGTGAATAATACGTTGACGCCGGAGGCATCGGGTC
CTTTTTCTTGCCAACCTCTTCCATACATTTCATGTTTGCACGAAACGTTG
GGCTACACCCTGAGGCTTGCATGGGTGCTGCGCGGTCGTGGGAACTGTCA
TCGACCTTGGCATAGGTCCCGTCTGACACATTTGGGCAAAGCACGTTTTT
TGGTGTAGAGATATTTCATTTTCCCCAAGCACGCAGGGATGGAAACGGAC
GGGCCGTGTCGTTTTCTTGGATGATTATTGAAGATTTCACTTTTTTGTTT
GTTCTTGGAACCGAGGCAACCTTACTGTCGTCAAAATATTGATTGAAGGG
TCTCCCCCTCTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1237:226430..226992+

>mRNA_F-serratus_M_contig1237.1794.1 ID=mRNA_F-serratus_M_contig1237.1794.1|Name=mRNA_F-serratus_M_contig1237.1794.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig1237:226430..226992+ (Fucus serratus male)
GGGAGCAAAATCTCCGCAGGATTCGGTACACTACCGGGGTTGCGATTTTG
GCTCAAAAACGCCTCCATCGAGGAGTTGTGGTATAATCTGTCACATAGAG
TAGGCGGACTACTGCAGTTTAAGCCCGATACTTATCTTTCATTTTCCGAT
CGGCCACAAGGAGGGTGTGGTTCAGGTGCAGTTGTCTTCTTTGTCTACCC
CGCGTTACGTATTCACGTGAATAATACGTTGACGCCGGAGGCATCGGGTC
CTTTTTCTTGCCAACCTCTTCCATACATTTCATGTTTGCACGAAACGTTG
GGCTACACCCTGAGGCTTGCATGGGTGCTGCGCGGTCGTGGGAACTGTCA
TCGACCTTGGCATAGGTCCCGTCTGACACATTTGGGCAAAGCACGTTTTT
TGGTGTAGGGGAGCAAAATCTCCGCAGGATTCGGTACACTACCGGGGTTG
CGATTTTGGCTCAAAAACGCCTCCATCGAGGAGTTGTGGTATAATCTGTC
ACATAGAGTAGGCGGACTACTGCAGTTTAAGCCCGATACTTATCTTTCAT
TTTCCGATCGGCCACAAGGAGGGTGTGGTTCAGGTGCAGTTGTCTTCTTT
GTCTACCCCGCGTTACGTATTCACGTGAATAATACGTTGACGCCGGAGGC
ATCGGGTCCTTTTTCTTGCCAACCTCTTCCATACATTTCATGTTTGCACG
AAACGTTGGGCTACACCCTGAGGCTTGCATGGGTGCTGCGCGGTCGTGGG
AACTGTCATCGACCTTGGCATAGGTCCCGTCTGACACATTTGGGCAAAGC
ACGTTTTTTGGTGTAG
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