mRNA_F-serratus_M_contig685.17905.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig685.17905.1
Unique NamemRNA_F-serratus_M_contig685.17905.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig685.17905.1 vs. uniprot
Match: A0A6H5K0J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J5_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 5.930e-34
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 LNGLLEQQEKDRRGRRSKMVSGADLIAALRQQRRELESKCASATERLRKMREETAFLQEVNQSLEANKEQWSIDLKQAQEGLASARTTLEKEVPKRERKVAQLMLKLD 324
            LNGLLEQQEK RR RR +MVSGADL++ALRQQRRELESKCASA+ RLRK+REETAFL E+NQSLEANK Q   +L+QAQ  L SAR   E+ VP+ E KVA LMLKLD
Sbjct:  319 LNGLLEQQEKSRRERRERMVSGADLVSALRQQRRELESKCASASARLRKIREETAFLYELNQSLEANKPQVLANLEQAQRDLDSARKAREEWVPQLEEKVAALMLKLD 426
[Close]
BLAST of mRNA_F-serratus_M_contig685.17905.1 vs. uniprot
Match: D7FPZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ1_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.890e-33
Identity = 78/108 (72.22%), Postives = 89/108 (82.41%), Query Frame = 1 
Query:    1 LNGLLEQQEKDRRGRRSKMVSGADLIAALRQQRRELESKCASATERLRKMREETAFLQEVNQSLEANKEQWSIDLKQAQEGLASARTTLEKEVPKRERKVAQLMLKLD 324
            LNGLLEQQEK RR RR +MVSGADL++ALRQQRRELESKCASA+ RLRK+REETAFL E+NQSLEANK Q   +L+QA+  L SAR   E+ VP+ E KVA LMLKLD
Sbjct:  464 LNGLLEQQEKSRRERRERMVSGADLVSALRQQRRELESKCASASARLRKIREETAFLWELNQSLEANKPQVLANLEQARRDLDSARKAREEWVPQLEEKVAALMLKLD 571
[Close]
BLAST of mRNA_F-serratus_M_contig685.17905.1 vs. uniprot
Match: W7TJZ3_9STRA (Brca1-associated protein 2 containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJZ3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.470e-13
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   61 SGADLIAALRQQRRELESKCASATERLRKMREETAFLQEVNQSLEANKEQWSIDLKQAQEGLASARTTLEKEVPKRERKVAQLMLKLD 324
            SGA ++AALRQ++R++E +CA A ERLRK+REE  FL  VN SLEAN+E  +  L++AQE L       E  V   E ++ QLM +LD
Sbjct:  538 SGATVVAALRQEKRQMEKRCAGARERLRKVREEVGFLSAVNASLEANQESVAASLREAQEELMKTEKERETMVGPLEERLRQLMTRLD 625
[Close]
BLAST of mRNA_F-serratus_M_contig685.17905.1 vs. uniprot
Match: K0SEU2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEU2_THAOC)

HSP 1 Score: 54.3 bits (129), Expect = 3.110e-6
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   40 GRRSKMVSGADLIAALRQQRRELESKCASATERLRKMREETAFLQEVNQSLEANKEQWSIDLKQAQEGLASAR 258
            GR     S ADLI+AL+Q+R +LE +C +   +++K+ ++TAFL ++N+SLEA+K  +   + +AQ  LA A+
Sbjct:  549 GRNDDYRSTADLISALKQERNQLEQRCVTLRRKVKKIEDDTAFLVDMNESLEADKCDFRGQITEAQNSLAEAK 621
[Close]
BLAST of mRNA_F-serratus_M_contig685.17905.1 vs. uniprot
Match: A0A7S3Q060_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q060_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.850e-6
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    1 LNGLLEQQEKDRRGRRSKMVSGADLIAALRQQRRELESKCASATERLRKMREETAFLQEVNQSLEANKEQWSIDLKQAQEGLASARTTLEKEVPKRERKVAQLMLKLD 324
              G+L    +D     SK ++ +DLI+AL+Q   +L+ +  S  ++  K+ E  AF+Q +N+SLEANKE     +   Q+     +T LE+ +P  E++V  LM++L+
Sbjct:  480 FQGILRDIRRDHEENLSK-INPSDLISALKQDLNQLQQRQHSLRQKSSKVAESVAFMQNMNESLEANKEPMKKKISNMQKQRKEYQTMLERSIPPLEKRVQCLMMELE 586
[Close]
BLAST of mRNA_F-serratus_M_contig685.17905.1 vs. uniprot
Match: A0A7S4I6R5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I6R5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.060e-5
Identity = 40/115 (34.78%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:    7 GLLEQQEKDRRGRR-------SKMVSG--ADLIAALRQQRRELESKCASATERLRKMREETAFLQEVNQSLEANKEQWSIDLKQAQEGLASARTTLEKEVPKRERKVAQLMLKLD 324
            G LE+  ++ R RR       SK   G  AD IAAL+ +R +LE++C +   R  K+ ++ AFL+++N+SLE+NK     ++  AQ   A  +  +   +P  E KV  LM++L+
Sbjct:  598 GRLEEIRREHRHRRRGSTGTSSKCFGGTTADHIAALKSERSQLEARCNTLRRRYLKVADDAAFLKDMNESLESNKNPIRKEITDAQRRRADMKKMMVACLPPLEEKVKLLMIQLE 712
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig685.17905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K0J5_9PHAE5.930e-3473.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPZ1_ECTSI2.890e-3372.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TJZ3_9STRA5.470e-1350.00Brca1-associated protein 2 containing protein n=2 ... [more]
K0SEU2_THAOC3.110e-641.10Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3Q060_9STRA7.850e-633.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4I6R5_9STRA7.060e-534.78Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig685contigF-serratus_M_contig685:46131..46636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.6e-28
Seed eggNOG ortholog2880.D7FPZ1
KEGG koko:K00413,ko:K10632
KEGG Pathwayko00190,ko01100,ko02020,ko04014,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04014,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000165,GO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008139,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016310,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032182,GO:0032446,GO:0032991,GO:0033218,GO:0035556,GO:0036211,GO:0042221,GO:0042277,GO:0042493,GO:0042802,GO:0043130,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902494,GO:1990234
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG0804@1,KOG0804@2759
Ec32 ortholog descriptionZinc finger, UBP-type
Ec32 orthologEc-01_008120.1
EC2.3.2.27
COG Functional cat.GO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932094.2001743-CDS-F-serratus_M_contig685:46130..462801622932094.2001743-CDS-F-serratus_M_contig685:46130..46280Fucus serratus maleCDSF-serratus_M_contig685 46131..46280 -
1690964143.9737232-CDS-F-serratus_M_contig685:46130..462801690964143.9737232-CDS-F-serratus_M_contig685:46130..46280Fucus serratus maleCDSF-serratus_M_contig685 46131..46280 -
1622932094.2255974-CDS-F-serratus_M_contig685:46462..466361622932094.2255974-CDS-F-serratus_M_contig685:46462..46636Fucus serratus maleCDSF-serratus_M_contig685 46463..46636 -
1690964143.987778-CDS-F-serratus_M_contig685:46462..466361690964143.987778-CDS-F-serratus_M_contig685:46462..46636Fucus serratus maleCDSF-serratus_M_contig685 46463..46636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig685.17905.1prot_F-serratus_M_contig685.17905.1Fucus serratus malepolypeptideF-serratus_M_contig685 46131..46636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig685.17905.1

>prot_F-serratus_M_contig685.17905.1 ID=prot_F-serratus_M_contig685.17905.1|Name=mRNA_F-serratus_M_contig685.17905.1|organism=Fucus serratus male|type=polypeptide|length=108bp
LNGLLEQQEKDRRGRRSKMVSGADLIAALRQQRRELESKCASATERLRKM
REETAFLQEVNQSLEANKEQWSIDLKQAQEGLASARTTLEKEVPKRERKV
AQLMLKLD
back to top

mRNA from alignment at F-serratus_M_contig685:46131..46636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig685.17905.1 ID=mRNA_F-serratus_M_contig685.17905.1|Name=mRNA_F-serratus_M_contig685.17905.1|organism=Fucus serratus male|type=mRNA|length=506bp|location=Sequence derived from alignment at F-serratus_M_contig685:46131..46636- (Fucus serratus male)
CTAAACGGCCTGCTCGAGCAGCAAGAGAAGGATCGCCGCGGCCGTCGATC
CAAAATGGTGTCAGGGGCCGACCTCATCGCCGCCTTGAGGCAGCAGAGGC
GTGAACTGGAGAGCAAGTGCGCCAGCGCCACGGAACGTTTGCGGAAGATG
AGGGAGGAGACTGCCTTTCTTCAAGTGAGAGAGCTGAAGATCGGACGAAA
ACATATTTTTAGCGAATTAACCCCCCCAGGTTTTTTCGCTCCAAATGTCG
TGATTTTTCACGCGGCCAATGCATAAAGTTAATGTGTAGTGTCCAAATTC
CGCTTACATGTGCTCAGGGCATCGCTTCAACTATCGCCGCTTTTCGCTTG
GCGCAGGAAGTGAACCAATCTCTGGAGGCGAACAAAGAGCAGTGGTCGAT
CGACCTGAAGCAAGCGCAGGAGGGCCTCGCTTCTGCGCGAACGACGCTAG
AGAAGGAGGTGCCGAAGCGGGAGCGCAAGGTGGCGCAGCTAATGCTGAAG
CTCGAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig685:46131..46636-

>mRNA_F-serratus_M_contig685.17905.1 ID=mRNA_F-serratus_M_contig685.17905.1|Name=mRNA_F-serratus_M_contig685.17905.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig685:46131..46636- (Fucus serratus male)
CTAAACGGCCTGCTCGAGCAGCAAGAGAAGGATCGCCGCGGCCGTCGATC
CAAAATGGTGTCAGGGGCCGACCTCATCGCCGCCTTGAGGCAGCAGAGGC
GTGAACTGGAGAGCAAGTGCGCCAGCGCCACGGAACGTTTGCGGAAGATG
AGGGAGGAGACTGCCTTTCTTCAACTAAACGGCCTGCTCGAGCAGCAAGA
GAAGGATCGCCGCGGCCGTCGATCCAAAATGGTGTCAGGGGCCGACCTCA
TCGCCGCCTTGAGGCAGCAGAGGCGTGAACTGGAGAGCAAGTGCGCCAGC
GCCACGGAACGTTTGCGGAAGATGAGGGAGGAGACTGCCTTTCTTCAAGA
AGTGAACCAATCTCTGGAGGCGAACAAAGAGCAGTGGTCGATCGACCTGA
AGCAAGCGCAGGAGGGCCTCGCTTCTGCGCGAACGACGCTAGAGAAGGAG
GTGCCGAAGCGGGAGCGCAAGGTGGCGCAGCTAATGCTGAAGCTCGATGA
AGTGAACCAATCTCTGGAGGCGAACAAAGAGCAGTGGTCGATCGACCTGA
AGCAAGCGCAGGAGGGCCTCGCTTCTGCGCGAACGACGCTAGAGAAGGAG
GTGCCGAAGCGGGAGCGCAAGGTGGCGCAGCTAATGCTGAAGCTCGAT
back to top