mRNA_F-serratus_M_contig6848.17903.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6848.17903.1
Unique NamemRNA_F-serratus_M_contig6848.17903.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6848.17903.1 vs. uniprot
Match: D8LLP9_ECTSI (Zinc binding dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP9_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 1.670e-65
Identity = 142/253 (56.13%), Postives = 168/253 (66.40%), Query Frame = 2 
Query:  242 LPAGDLAVPIV---------REASGYFT*AWYVENFGHLREASLVRVAGEGAG----------GRVGGRVELTVLAHTSASIATALRVLEDFTPEGAGGGGSCGVLGASTVVAQARFLLQLAAARGLETVCLVSDDEEAGTSNETGRLESDAAEEFKAMRMDNACLVADGEG-VLGFTAARALRFRGFFVSYADVSGGGINLPVAGQIFRDTRCRGFSLQRWASKRAPEEARALAARSLEAAAAAGLRLECVR 940
            L  GDLAVP+V         R+A+G     W       L EASLV+V   G+G          G  GG V   V AH S S+ATA+R+LEDF  +  G G      GAS+ VAQ   LLQLAA+RGLE+VCLV+ +EEA  + + G  ++   +EFKAMRMDNAC+VADGEG VLGFTAARALRFRG FVSYAD+SGGG++LPVAGQIF DT+CRGFSL+RWAS R P E R L  RSL  AA+AGLRLE  R
Sbjct:  116 LRPGDLAVPVVAGNDPGNGARQAAG----TWRTR--ATLTEASLVKVPIGGSGAAAAGVLEEKGGDGGGVGFEVAAHCSVSVATAIRILEDFVEKELGAGDRVVFTGASSAVAQ--ILLQLAASRGLESVCLVNSEEEAALALKLGAWKATLLKEFKAMRMDNACIVADGEGGVLGFTAARALRFRGCFVSYADLSGGGVSLPVAGQIFSDTKCRGFSLRRWASSRPPSEKRELVERSLGVAASAGLRLEGAR 360
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BLAST of mRNA_F-serratus_M_contig6848.17903.1 vs. uniprot
Match: A0A6H5JRW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW4_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.510e-52
Identity = 127/254 (50.00%), Postives = 152/254 (59.84%), Query Frame = 2 
Query:  242 LPAGDLAVPIV---------REASGYFT*AWYVENFGHLREASLVRVAGEGAGGRV-----------GGRVELTVLAHTSASIATALRVLEDFTPEGAGGGGSCGVLGASTVVAQARFLLQLAAARGLETVCLVSDDEEAGTSNETGRLESDAAEEFKAMRMDNACLVADGEG-VLGFTAARALRFRGFFVSYADVSGGGINLPVAGQIFRDTRCRGFSLQRWASKRAPEEARALAARSLEAAAAAGLRLECVR 940
            L  GDLAVP++         R+A+G     W       L EASLV+V   G  G             GG V + V AH S S+ATA+R+L+DF  +  G G      GAS+ VAQAR                   +EEA  + + G  ++   +EFKAMRMDNAC+VADGEG VLGFTAARALRFRG FVSYAD+SGGG++LPVAGQIF DT+CRGFSL+RWAS R P E R L  RSL  AA+AGLRLE  R
Sbjct:  117 LRPGDLAVPVMAGNDSGNGARQAAG----TWRSRAI--LTEASLVKVPIVGGSGAAAAGVLGEESSDGGGVGVEVAAHCSGSVATAIRILDDFVEKELGAGDRVVFTGASSAVAQARCC-----------------EEEAALALKLGAWKATLLKEFKAMRMDNACIVADGEGGVLGFTAARALRFRGCFVSYADLSGGGVSLPVAGQIFSDTKCRGFSLRRWASARPPSEKRDLVERSLGVAASAGLRLEGAR 347
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6848.17903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLP9_ECTSI1.670e-6556.13Zinc binding dehydrogenase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JRW4_9PHAE1.510e-5250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6848contigF-serratus_M_contig6848:22696..24832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size940
Cds size378
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6848.17903.1prot_F-serratus_M_contig6848.17903.1Fucus serratus malepolypeptideF-serratus_M_contig6848 22696..23073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932093.598222-CDS-F-serratus_M_contig6848:22695..230731622932093.598222-CDS-F-serratus_M_contig6848:22695..23073Fucus serratus maleCDSF-serratus_M_contig6848 22696..23073 +
1690964143.80105-CDS-F-serratus_M_contig6848:22695..230731690964143.80105-CDS-F-serratus_M_contig6848:22695..23073Fucus serratus maleCDSF-serratus_M_contig6848 22696..23073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932093.6187327-UTR-F-serratus_M_contig6848:23073..232271622932093.6187327-UTR-F-serratus_M_contig6848:23073..23227Fucus serratus maleUTRF-serratus_M_contig6848 23074..23227 +
1690964143.8150496-UTR-F-serratus_M_contig6848:23073..232271690964143.8150496-UTR-F-serratus_M_contig6848:23073..23227Fucus serratus maleUTRF-serratus_M_contig6848 23074..23227 +
1622932093.650793-UTR-F-serratus_M_contig6848:23650..237671622932093.650793-UTR-F-serratus_M_contig6848:23650..23767Fucus serratus maleUTRF-serratus_M_contig6848 23651..23767 +
1690964143.8259814-UTR-F-serratus_M_contig6848:23650..237671690964143.8259814-UTR-F-serratus_M_contig6848:23650..23767Fucus serratus maleUTRF-serratus_M_contig6848 23651..23767 +
1622932093.6658182-UTR-F-serratus_M_contig6848:24128..242621622932093.6658182-UTR-F-serratus_M_contig6848:24128..24262Fucus serratus maleUTRF-serratus_M_contig6848 24129..24262 +
1690964143.837392-UTR-F-serratus_M_contig6848:24128..242621690964143.837392-UTR-F-serratus_M_contig6848:24128..24262Fucus serratus maleUTRF-serratus_M_contig6848 24129..24262 +
1622932093.6854458-UTR-F-serratus_M_contig6848:24675..248321622932093.6854458-UTR-F-serratus_M_contig6848:24675..24832Fucus serratus maleUTRF-serratus_M_contig6848 24676..24832 +
1690964143.8491364-UTR-F-serratus_M_contig6848:24675..248321690964143.8491364-UTR-F-serratus_M_contig6848:24675..24832Fucus serratus maleUTRF-serratus_M_contig6848 24676..24832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6848.17903.1

>prot_F-serratus_M_contig6848.17903.1 ID=prot_F-serratus_M_contig6848.17903.1|Name=mRNA_F-serratus_M_contig6848.17903.1|organism=Fucus serratus male|type=polypeptide|length=126bp
DADDPSASVPPGPGEAGVTLHTAPCTQADLRTIAAAKSHNSPNLQRPSVP
VPPHLKFAFPFVGGSEGLWEVNALGEGVSLPSGGRPCRADRSGSLRVLHL
SLVRGELRPPSRGVTCQGGRGRGGR*
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mRNA from alignment at F-serratus_M_contig6848:22696..24832+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6848.17903.1 ID=mRNA_F-serratus_M_contig6848.17903.1|Name=mRNA_F-serratus_M_contig6848.17903.1|organism=Fucus serratus male|type=mRNA|length=2137bp|location=Sequence derived from alignment at F-serratus_M_contig6848:22696..24832+ (Fucus serratus male)
GATGCCGACGATCCTTCAGCCTCCGTACCTCCAGGCCCCGGCGAGGCAGG
CGTCACCCTACACACGGCCCCCTGCACCCAGGCCGACCTCCGAACGATTG
CCGCCGCTAAATCCCACAACTCTCCCAATCTGCAGCGCCCAAGCGTACCC
GTTCCGCCGCATCTCAAGTTCGCTTTCCCGTTCGTGGGTGGGAGTGAAGG
CCTCTGGGAAGTCAACGCTTTGGGCGAGGGCGTCTCTCTTCCTTCCGGCG
GGAGACCTTGCCGTGCCGATCGTTCGGGAAGCCTCCGGGTACTTCACCTG
AGCTTGGTACGTGGAGAACTTCGGCCACCTTCGAGAGGCGTCACTTGTCA
GGGTGGCAGGGGAAGGGGCGGGAGGTAGGGTTGGAGGCCGCGTGGAGCTA
ACGGTTCTCGCGCACACTTCCGCGAGCATTGCCACAGCGCTGCGTGTCCT
CGAGGACTTCACCCCTGAAGGCGCTGGAGGCGGGGGATCGTGTGGTGTTC
TGGGGGCTTCGACGGTCGTGGCACAGGCAAGGGTTTCCTTTTGGAGATTG
GTTTCTCGAGTCTCGCACCCCCCACCCCGCGCGCGCGTAATTCATTGCGT
CGTGTCTATAAATAATCTTTGAGGAGGATGCCACTGCTCCGACAGACCGA
CAAACTTAACATTTTGTTTGTTGTTGAGTCCTTTTTCCGACTGGTCTCCG
TGGCAGCCGACTATACCTCCATCGCCGCAGGCACAGATTATTCACCGTGA
AAAAAAATGGCGGACGATTGTCTCTCGTCACATTTGTCCGTCTGTCCGTC
GAATCACCGCCGATCCTCACGCCTTCGGAATCACCGTGTCAACCGCACCA
CCCTGCTGCTGCTGCTGCTGTATGCCGGCAAAGAAGTTCGAAATAAAGAA
GATGCCGTCTTCCTTTCAACGACCGCTACGTTCCCCGATGACCTGCCCCC
GACAGTTTCTGCTGCAGCTCGCGGCGGCTCGAGGGCTGGAGACCGTGTGT
CTTGTTTCCGACGACGAGGAAGCCGGAACGAGCAACGAAACTGGGCGCCT
GGAAAGTGACGCTGCTGAAGAGGTACCGGCAGCACAGTAGGTAGTACAGT
AAAGTGTGGTATAGTATAGTGTAGTATTAGGAACTTCCCGCCAATCACAC
TCGAACCAGCTACGAAATCTTGAACACGTAAATTCGTGCGTCCGAAGCCT
TGACATACTCGACCTGTAGGGCAAAAGCGCGCTGCTTCCTGCACCATGAC
CTCGATATCTGCGGGCAGCTCGGTCCCGTACTATGCGTCCGCGCTCACAG
GGCATTCCCTTCTCTAAAGAACTCGTCGGGACGCTCGCCTCCTACGTGTA
TTGTATTACTACGTATTTTTTGTCGCCGTACGTAGCTCAGTCTCAACATC
GCACACCGTTCCCGTATGCTTGGGCCCTCGCAGTTCAAGGCGATGCGAAT
GGACAACGCCTGCTTGGTGGCGGATGGCGAGGGGGTGCTCGGCTTCACGG
CCGCGAGGGCGCTTCGATTCCGCGGATTCTTTGTCTCTTACGCCGACGTT
TCCGGAGGCGGCATCAAGTACTAAAAGCGTGTTGCTGCATGCGTTCTCTT
CACATTTTATGGAAGCAGATGCCGTTCCAAGCCACTGTCATTGGAAATTC
TTGGAACGGCATTAAGTGAACCGTACCCTGCTTCTATTGCGCGTGACTTC
GCCTTAATAAATAATAACAAAAAATAGGAAGTGAGAATCAGGCACATCTC
CGTCGGCCTCGAAACGGAATTCGCGTGTTTCTCTTGACATGATCGCGCCG
AGTTTCATGCTGTGATGTTTATCTCTCCGGTTTTTTCTCATTCCGACCCG
TGAATGCCTCGGCGCTCTCCTCTCGTACTCGACGCCCTCGAAAAACGCAT
CATATTTGGGTGAACCCTGTGACGGTCGCGTGCTGAGTAGCCTTGTCGAC
CCTCCGCCTTCCGCGCCTCCTTCCCCACAGCCTTCCCGTCGCGGGGCAAA
TTTTCCGCGACACACGGTGTCGAGGCTTCTCCCTACAGCGATGGGCGTCG
AAGCGGGCGCCAGAGGAAGCCAGAGCTCTCGCGGCGCGATCTTTGGAGGC
TGCGGCTGCGGCAGGCTTAAGACTCGAGTGCGTGCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6848:22696..24832+

>mRNA_F-serratus_M_contig6848.17903.1 ID=mRNA_F-serratus_M_contig6848.17903.1|Name=mRNA_F-serratus_M_contig6848.17903.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig6848:22696..24832+ (Fucus serratus male)
GATGCCGACGATCCTTCAGCCTCCGTACCTCCAGGCCCCGGCGAGGCAGG
CGTCACCCTACACACGGCCCCCTGCACCCAGGCCGACCTCCGAACGATTG
CCGCCGCTAAATCCCACAACTCTCCCAATCTGCAGCGCCCAAGCGTACCC
GTTCCGCCGCATCTCAAGTTCGCTTTCCCGTTCGTGGGTGGGAGTGAAGG
CCTCTGGGAAGTCAACGCTTTGGGCGAGGGCGTCTCTCTTCCTTCCGGCG
GGAGACCTTGCCGTGCCGATCGTTCGGGAAGCCTCCGGGTACTTCACCTG
AGCTTGGTACGTGGAGAACTTCGGCCACCTTCGAGAGGCGTCACTTGTCA
GGGTGGCAGGGGAAGGGGCGGGAGGTAGGATGCCGACGATCCTTCAGCCT
CCGTACCTCCAGGCCCCGGCGAGGCAGGCGTCACCCTACACACGGCCCCC
TGCACCCAGGCCGACCTCCGAACGATTGCCGCCGCTAAATCCCACAACTC
TCCCAATCTGCAGCGCCCAAGCGTACCCGTTCCGCCGCATCTCAAGTTCG
CTTTCCCGTTCGTGGGTGGGAGTGAAGGCCTCTGGGAAGTCAACGCTTTG
GGCGAGGGCGTCTCTCTTCCTTCCGGCGGGAGACCTTGCCGTGCCGATCG
TTCGGGAAGCCTCCGGGTACTTCACCTGAGCTTGGTACGTGGAGAACTTC
GGCCACCTTCGAGAGGCGTCACTTGTCAGGGTGGCAGGGGAAGGGGCGGG
AGGTAG
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