mRNA_F-serratus_M_contig6848.17902.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6848.17902.1
Unique NamemRNA_F-serratus_M_contig6848.17902.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6848.17902.1 vs. uniprot
Match: D8LLP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP8_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.610e-42
Identity = 83/115 (72.17%), Postives = 92/115 (80.00%), Query Frame = 1 
Query:    1 EVLELSAKDTKTLYYMPTGGVRRVTLSTVKDLEEEIVNGAAIQAKIPMALVRKQEAGRVGCATATMDCVVSVFGFSGGVSSGSA-----------TSKELASEVARVLKPGGALL 312
            EVLELSAKDTKTLYYMPTGGVRR+TLSTVKDLE EIVNGAAIQAKIP ALVRKQE  ++ C + TMDCVVSV+GFSGGV++ +A           T K L SEVARVLKPGG +L
Sbjct:  154 EVLELSAKDTKTLYYMPTGGVRRLTLSTVKDLENEIVNGAAIQAKIPTALVRKQEGTKISCTSGTMDCVVSVYGFSGGVAAAAASNKGANAAAAGTLKGLVSEVARVLKPGGTVL 268
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BLAST of mRNA_F-serratus_M_contig6848.17902.1 vs. uniprot
Match: A0A836CAE9_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.950e-24
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 EVLELSAKDTKTLYYMPTGGVRRVTLSTVKDLEEEIVNGAAIQAKIPMALVRKQEAGRVGCATATMDCVVSVFGFSGGVSSGSATSKELASEVARVLKPGGALL 312
            +VL+LSAKD+K LYY+P+GG RRV LST+ DL++++ + AA+QA++P+  VRKQ    + C T  MD V+S+ GF+G     S  +K L  EV RVLKPGG L+
Sbjct:  127 DVLQLSAKDSKALYYLPSGGARRVILSTITDLKQDLADAAAVQARVPVVSVRKQLDDTLDCPTGIMDAVISLGGFNG-----STNTKRLIKEVTRVLKPGGQLI 225
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6848.17902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLP8_ECTSI7.610e-4272.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAE9_9STRA5.950e-2450.96Methyltransf_11 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6848contigF-serratus_M_contig6848:20185..20825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue2.1e-35
Seed eggNOG ortholog2880.D8LLP8
Hectar predicted targeting categoryother localisation
EggNOG OGs2E068@1,2S7MS@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-04_004940.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932093.522388-CDS-F-serratus_M_contig6848:20184..203941622932093.522388-CDS-F-serratus_M_contig6848:20184..20394Fucus serratus maleCDSF-serratus_M_contig6848 20185..20394 -
1690964143.7713616-CDS-F-serratus_M_contig6848:20184..203941690964143.7713616-CDS-F-serratus_M_contig6848:20184..20394Fucus serratus maleCDSF-serratus_M_contig6848 20185..20394 -
1622932093.5366313-CDS-F-serratus_M_contig6848:20723..208251622932093.5366313-CDS-F-serratus_M_contig6848:20723..20825Fucus serratus maleCDSF-serratus_M_contig6848 20724..20825 -
1690964143.783453-CDS-F-serratus_M_contig6848:20723..208251690964143.783453-CDS-F-serratus_M_contig6848:20723..20825Fucus serratus maleCDSF-serratus_M_contig6848 20724..20825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6848.17902.1prot_F-serratus_M_contig6848.17902.1Fucus serratus malepolypeptideF-serratus_M_contig6848 20185..20825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6848.17902.1

>prot_F-serratus_M_contig6848.17902.1 ID=prot_F-serratus_M_contig6848.17902.1|Name=mRNA_F-serratus_M_contig6848.17902.1|organism=Fucus serratus male|type=polypeptide|length=104bp
EVLELSAKDTKTLYYMPTGGVRRVTLSTVKDLEEEIVNGAAIQAKIPMAL
VRKQEAGRVGCATATMDCVVSVFGFSGGVSSGSATSKELASEVARVLKPG
GALL
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mRNA from alignment at F-serratus_M_contig6848:20185..20825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6848.17902.1 ID=mRNA_F-serratus_M_contig6848.17902.1|Name=mRNA_F-serratus_M_contig6848.17902.1|organism=Fucus serratus male|type=mRNA|length=641bp|location=Sequence derived from alignment at F-serratus_M_contig6848:20185..20825- (Fucus serratus male)
GAGGTGCTTGAACTCAGCGCCAAGGACACCAAGACTCTGTATTATATGCC
GACGGGGGGCGTGCGGAGGGTCACCCTCTCCACCGTCAAGGATCTCGAGG
AGGTAAAAGAAGCACTTAGCACCGCATACAGTTTGTAGTGCTTCGTGCTT
CAGACGCGTAGTATCGTAGTGCGCCGGTGTAATCGATCGTGTTGCTAGGA
ACGCCTTCCTCGAGGCTCATAGAAGCTCAAGTCAAAAAAAAAAGGGGGAA
AAAATATGCGAAAAATCACCCGTCGCAGTTTGCGTGGCACTGCTACTTGC
TTAAACTCCCGGCAAACGGTCGTCCGCGTCCACGCTTGAGAGCCTCTTGC
ACACGATTAGGATGGAGAAAAACAGTGTTACCCATGTATCGCCGTGACCC
TCTTATGTTTTCCACCCGGTCGCGTGGAAAGGAAATCGTGAATGGTGCGG
CGATACAGGCGAAGATCCCCATGGCCCTGGTCCGTAAGCAGGAGGCGGGG
CGGGTGGGCTGTGCAACGGCGACCATGGACTGCGTTGTGTCGGTGTTCGG
TTTCTCGGGAGGTGTTTCGTCGGGCTCCGCGACGTCGAAGGAGCTGGCGT
CGGAGGTAGCGCGCGTGCTCAAACCCGGGGGTGCGCTGCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6848:20185..20825-

>mRNA_F-serratus_M_contig6848.17902.1 ID=mRNA_F-serratus_M_contig6848.17902.1|Name=mRNA_F-serratus_M_contig6848.17902.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig6848:20185..20825- (Fucus serratus male)
GAGGTGCTTGAACTCAGCGCCAAGGACACCAAGACTCTGTATTATATGCC
GACGGGGGGCGTGCGGAGGGTCACCCTCTCCACCGTCAAGGATCTCGAGG
AGGAGGTGCTTGAACTCAGCGCCAAGGACACCAAGACTCTGTATTATATG
CCGACGGGGGGCGTGCGGAGGGTCACCCTCTCCACCGTCAAGGATCTCGA
GGAGGAAATCGTGAATGGTGCGGCGATACAGGCGAAGATCCCCATGGCCC
TGGTCCGTAAGCAGGAGGCGGGGCGGGTGGGCTGTGCAACGGCGACCATG
GACTGCGTTGTGTCGGTGTTCGGTTTCTCGGGAGGTGTTTCGTCGGGCTC
CGCGACGTCGAAGGAGCTGGCGTCGGAGGTAGCGCGCGTGCTCAAACCCG
GGGGTGCGCTGCTCGAAATCGTGAATGGTGCGGCGATACAGGCGAAGATC
CCCATGGCCCTGGTCCGTAAGCAGGAGGCGGGGCGGGTGGGCTGTGCAAC
GGCGACCATGGACTGCGTTGTGTCGGTGTTCGGTTTCTCGGGAGGTGTTT
CGTCGGGCTCCGCGACGTCGAAGGAGCTGGCGTCGGAGGTAGCGCGCGTG
CTCAAACCCGGGGGTGCGCTGCTC
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