mRNA_F-serratus_M_contig6848.17901.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI) HSP 1 Score: 241 bits (616), Expect = 3.080e-72 Identity = 132/235 (56.17%), Postives = 142/235 (60.43%), Query Frame = 3
Query: 126 RGGKLDPTLFSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVRDARNIVLRGEPEVQDSWFPGYAWITAYCEGCLNHLXXXXXXGWRFVSVRRGAG------RESGTVLADSGE-----------------------------------------------------ELGPASFFGLRRPTLV 653
R GKLDPTLFS+WLAANLPLDDDARQELL LDSVVMRLRLE+KHL+ S RR LCCASCD GVAWEGDVFTLPGAEGVVGAYVN GYVHQTVTVRDARN+VL G PE + SWFPGYAW YC C HL GWRF ++R G+G R+ + L SG ELGPASFFGLRRP LV
Sbjct: 362 RRGKLDPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEQSRRRELCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGTPEEEHSWFPGYAWTCVYCAFCNEHL------GWRFTAIRPGSGEQEHRQRQQRSGLLSSGSPSSPRASPHSSSSLLPLPSPVAGGASGSGGRGALGSSRPATTATAGGEGVNEPELGPASFFGLRRPALV 590
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE) HSP 1 Score: 236 bits (603), Expect = 4.490e-70 Identity = 118/170 (69.41%), Postives = 131/170 (77.06%), Query Frame = 3
Query: 126 RGGKLDPTLFSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVRDARNIVLRGEPEVQDSWFPGYAWITAYCEGCLNHLXXXXXXGWRFVSVRRGAG------RESGTVLADSGEELGP 617
R GKLDPTLFS+WLAANLPLDD ARQELL LDSVVMRLR+E+KHL+ S RR LCCASC+ GVAWEGDVFTLPGAEGVVGAYVN GYVHQTVTVRDARN+VL G PE + SWFPGYAW AYC C+ HL GWRF ++R G+G R+ +VL SG L P
Sbjct: 415 RRGKLDPTLFSFWLAANLPLDDVARQELLMLDSVVMRLRVEIKHLEESRRRELCCASCNRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCAYCAFCMEHL------GWRFTAIRPGSGEQERRQRQPRSVLLSSGSPLSP 578
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: A0A835YMI6_9STRA (Protein cereblon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMI6_9STRA) HSP 1 Score: 152 bits (383), Expect = 2.370e-38 Identity = 81/171 (47.37%), Postives = 106/171 (61.99%), Query Frame = 3
Query: 153 FSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVRDARNIVLRG-EPEVQDSWFPGYAWITAYCEGCLNHLXXXXXXGWRFVSVRRGAGRESGTVLADSGEELGPASFFGLRRPTLVHQQ 662
FS+WLA++LPL DDARQ LL +SVV RLR V+HLQ +++ L CA C+ +A F++PGAEG VGAYVN G+VHQT+T+R+ARN+ L+ P DSWFPG+AW AYC C HL GW+F + G+ R++ L F+G RR TL Q
Sbjct: 332 FSFWLASSLPLGDDARQALLETNSVVERLRAGVRHLQRAAKLPLRCAHCNTPIAQPSHAFSVPGAEGAVGAYVNPAGFVHQTITLREARNVRLQAVPPTATDSWFPGFAWTVAYCRRCDAHL------GWKFTPI--GSPRDTMAGLP----------FWGFRRSTLREGQ 484
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: UPI001CF4E721 (protein cereblon-like isoform X1 n=6 Tax=Acropora TaxID=6127 RepID=UPI001CF4E721) HSP 1 Score: 142 bits (359), Expect = 9.760e-36 Identity = 75/177 (42.37%), Postives = 106/177 (59.89%), Query Frame = 3
Query: 144 PTLFSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVRDARNIVLRGEPEVQDSWFPGYAWITAYCEGCLNHLXXXXXXGWRFVSVRRGAGRESGTVLADSGEELGPASFFGLRR----PTLVHQQ 662
PT FS+W+AAN+PLDDD R ++L +D RLR E++ ++ A CC+ CD +A +GD+F++ +G +GAYVN G VH+T+T A++ LRG P ++SWFPGYAW A C C NHL GWRF +V+RG L P+ F+GL R PTL +++
Sbjct: 302 PTEFSFWVAANMPLDDDLRLQVLGIDCPTQRLRRELEIVRKCG--AFCCSECDTKIAEKGDLFSM-SLDGPLGAYVNPNGCVHETLTFYRAKSFRLRGRPTTENSWFPGYAWTIAECAQCGNHL------GWRFTAVKRG---------------LSPSKFWGLTRKALKPTLTYEE 454
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: A0A6P8IV65_ACTTE (Protein cereblon n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IV65_ACTTE) HSP 1 Score: 140 bits (353), Expect = 5.230e-35 Identity = 75/182 (41.21%), Postives = 101/182 (55.49%), Query Frame = 3
Query: 141 DPTLFSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVRDARNIVLRGEPEVQDSWFPGYAWITAYCEGCLNHLXXXXXXGWRFVSVRRGAGRESGTVLADSGEELGPASFFGLRRPTLVHQQEEPRVEVE 686
DP FSYW+AANLPLDD + ELL +DS RLR E+K + S LCC C+ + ++ D+F + +G + AYVN G+VH+T+T A + LRG P ++SWFPGYAW A C C NHL GWRF +V++G L P+ F+GL R +L + E E
Sbjct: 281 DPIDFSYWVAANLPLDDSLKLELLYVDSTTERLRKELKMMYRCS--VLCCGDCNTTICYKNDLFCM-SLDGPLAAYVNPSGWVHETLTFYKATGVRLRGRPTAENSWFPGYAWTIAECMHCHNHL------GWRFTAVKKG---------------LSPSKFWGLTRASLKPGMRSDKDEEE 438
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: UPI000A2A9770 (protein cereblon n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9770) HSP 1 Score: 139 bits (351), Expect = 1.110e-34 Identity = 73/170 (42.94%), Postives = 99/170 (58.24%), Query Frame = 3
Query: 141 DPTLFSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVRDARNIVLRGEPEVQDSWFPGYAWITAYCEGCLNHLXXXXXXGWRFVSVRRGAGRESGTVLADSGEELGPASFFGLRRPTL 650
DP FSYW+AANLPLDD + ELL +D RLR E+ + S LCC C+ +A++ D+F + +G + AYVN G+VH+T+T A + LRG P ++SWFPGYAW A C+ C+NHL GWRF SV++G L P+ F+GL R +L
Sbjct: 280 DPIDFSYWVAANLPLDDTLKIELLNIDCTTQRLRKELDIMHKCS--VLCCRDCNSTIAYKTDLFCM-SLDGPLAAYVNPHGWVHETLTFYKATGVRLRGRPTAENSWFPGYAWTIAECQQCVNHL------GWRFTSVKKG---------------LTPSKFWGLTRASL 425
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: A0A4D9D0A6_9STRA (CULT domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0A6_9STRA) HSP 1 Score: 135 bits (339), Expect = 2.290e-34 Identity = 84/214 (39.25%), Postives = 112/214 (52.34%), Query Frame = 3
Query: 66 DCDEGQQDGEDEEKDEWRSGRGGKLDPTLFSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVR----DARNIVLRGEPEVQDSWFPGYAWITAYCEGCLNHLXXXXXXGWRFVSVRRGAGRESGTVLADSGEELGPASFFGLRRPTLVHQQEEPRVEVEENR 695
DC +G++ G E DE D S+ LAA+LPLDD RQ LL +DSVV RL+ + L+ ++ LCCA C++ + +G +F++PGAEG VGAY N G VHQ +TVR + N+ L G E + SWF GYAW AYC C HL GW F RE T L F+G+RR LV + + V ++R
Sbjct: 62 DCLDGEERGR-EGADEEEGATVDMRDAVSLSFRLAASLPLDDITRQRLLAMDSVVYRLQNIILLLKNTAESKLCCAHCEVALVGKGALFSVPGAEGTVGAYSNPAGVVHQMLTVRGVLDEEENVALEGPTETEGSWFEGYAWTIAYCRRCSLHL------GWLFTCCE--VNREDSTDLP---------RFWGIRRQALVDELQCNAQRVPDSR 257
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: A7S6W7_NEMVE (Protein cereblon (Fragment) n=5 Tax=Nematostella vectensis TaxID=45351 RepID=A7S6W7_NEMVE) HSP 1 Score: 137 bits (345), Expect = 3.550e-34 Identity = 70/178 (39.33%), Postives = 103/178 (57.87%), Query Frame = 3
Query: 144 PTLFSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVRDARNIVLRGEPEVQDSWFPGYAWITAYCEGCLNHLXXXXXXGWRFVSVRRGAGRESGTVLADSGEELGPASFFGLRRPTLVHQQEEPRV 677
PT FS+W+AANLPLDD R ++L ++ RLR E+ +Q S LCC C+ +A++ ++F++ +G +GAYVN G+VH+T+T A I LRG P ++SWFPGYAW A C+ C NHL GWRF ++++G L P F+GL R +L ++ +
Sbjct: 246 PTEFSFWIAANLPLDDRLRLQILTINCPTQRLRKELSIMQKCS--VLCCRDCNSTIAYKNELFSM-SLDGPLGAYVNPGGFVHETLTFYKALGIRLRGHPTAENSWFPGYAWTIAECQQCSNHL------GWRFSAIKKG---------------LSPGKFWGLTRSSLKPSMKDEGI 399
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: A0A2K1IAY2_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IAY2_PHYPA) HSP 1 Score: 139 bits (349), Expect = 1.730e-33 Identity = 72/176 (40.91%), Postives = 104/176 (59.09%), Query Frame = 3
Query: 144 PTLFSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQ-LSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVRDARNIVLRGEPEVQDSWFPGYAWITAYCEGCLNHLXXXXXX-GWRFVSVRRGAGRESGTVLADSGEELGPASFFGLRRPTLVHQQE 665
PT SY++ +N+P+ D RQELL +D+ + RL+ E++ L+ + + R CC +AW DVF + EG +GAYVNA GYVH+T+T+ ARN+ +RG P+ ++SWFPGYAWI A C+ C HL GWRF++V R P +F+G+RR L+ E
Sbjct: 522 PTELSYYIGSNMPIQDHTRQELLEIDTTLARLKREIQLLEGMDTLRCNCCREV---IAWRRDVFVM-STEGAIGAYVNAHGYVHETLTLSCARNMRIRGAPQTENSWFPGYAWILAKCQAC--HLNNREQHMGWRFIAVDR---------------NTRPQTFWGIRRTQLIGSSE 676
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Match: A0A3M6U5D7_POCDA (Protein cereblon n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6U5D7_POCDA) HSP 1 Score: 135 bits (341), Expect = 2.780e-33 Identity = 73/179 (40.78%), Postives = 104/179 (58.10%), Query Frame = 3
Query: 144 PTLFSYWLAANLPLDDDARQELLRLDSVVMRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMGYVHQTVTVRDARNIVLRGEPEVQDSWFPGYAWITAYCEGCLNHLXXXXXXGWRFVSVRRGAGRESGTVLADSGEELGPASFFGLRR----PTLVHQQEE 668
P FS+W+AAN+PLDD R ++L ++ RLR E++ ++ S LCC SCD + + D+F++ +G +GAYVN G+VH+T+T A I LRG+P Q+SWFPGYAW A C C +HL GWRF +V++G L P F+GL R PTL + ++E
Sbjct: 276 PLDFSFWVAANMPLDDSLRLQILGINCPTQRLRKELEIVRKCS--VLCCRSCDTKIVEKSDLFSM-SLDGPLGAYVNPNGWVHETLTFYRASGIRLRGKPTAQNSWFPGYAWTIAECAQCADHL------GWRFTAVKKG---------------LSPNKFWGLTRASLRPTLKYDEQE 430 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6848.17901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6848.17901.1 >prot_F-serratus_M_contig6848.17901.1 ID=prot_F-serratus_M_contig6848.17901.1|Name=mRNA_F-serratus_M_contig6848.17901.1|organism=Fucus serratus male|type=polypeptide|length=157bp MRLRLEVKHLQLSSRRALCCASCDIGVAWEGDVFTLPGAEGVVGAYVNAMback to top mRNA from alignment at F-serratus_M_contig6848:13868..16701+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6848.17901.1 ID=mRNA_F-serratus_M_contig6848.17901.1|Name=mRNA_F-serratus_M_contig6848.17901.1|organism=Fucus serratus male|type=mRNA|length=2834bp|location=Sequence derived from alignment at F-serratus_M_contig6848:13868..16701+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6848:13868..16701+ >mRNA_F-serratus_M_contig6848.17901.1 ID=mRNA_F-serratus_M_contig6848.17901.1|Name=mRNA_F-serratus_M_contig6848.17901.1|organism=Fucus serratus male|type=CDS|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig6848:13868..16701+ (Fucus serratus male)back to top |