mRNA_F-serratus_M_contig6845.17897.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6845.17897.1
Unique NamemRNA_F-serratus_M_contig6845.17897.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6845.17897.1 vs. uniprot
Match: D7FZ46_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ46_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 5.150e-23
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 2 
Query:  179 GDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNH 418
            G++WG+ + E+V  R+ EY QASS+LSFAA GQ+FTD +L QL  RA DYVENA+LTLGR+GVRTS H W+H+ D+I  H
Sbjct:  226 GEIWGHVSPEEVRDRVLEYFQASSSLSFAANGQEFTDFDLLQLHTRAGDYVENAKLTLGRAGVRTSNHMWLHFADSIKAH 305
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BLAST of mRNA_F-serratus_M_contig6845.17897.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.320e-22
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 2 
Query:  182 DVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNH 418
            +VWG  NDE VL RL++YLQASSAL+FAARGQ F+D +L +L +RA D VEN++LTLGR GV+T+ H W+H  ++I  H
Sbjct:  505 EVWGRLNDEGVLDRLRQYLQASSALTFAARGQVFSDSDLVELHVRAGDMVENSKLTLGREGVKTTMHQWLHVAESIRAH 583
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BLAST of mRNA_F-serratus_M_contig6845.17897.1 vs. uniprot
Match: A0A6H5KN48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN48_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.990e-19
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 2 
Query:  188 WGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYV---------ENARLTLGRSGVRTSTHNWIHWTDTILNH 418
            WG+ + E+V  R+ EY QASS+LSFAA GQ+FTD +L +L  RA DYV         ENA+LTLG +GVRTS H W+H+ D+I  H
Sbjct:   12 WGDVSPEEVRDRVLEYFQASSSLSFAANGQEFTDLDLDELHTRAGDYVSVAMTTAFVENAKLTLGLAGVRTSNHMWLHFADSIKPH 97
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BLAST of mRNA_F-serratus_M_contig6845.17897.1 vs. uniprot
Match: A0A6H5JM61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM61_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.770e-14
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 2 
Query:  182 DVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGVRTSTHNWIHWTDTILNH 418
            ++ G+ + E+V  R+ EY Q SS+LSFAA GQ+FTD +L +L  RA DY     LTLGR+GVRTS H W+H+ D+I  H
Sbjct:   54 EIRGDVSPEEVRDRVLEYFQPSSSLSFAANGQEFTDLDLDELHTRAGDY-----LTLGRAGVRTSNHMWLHFADSIKAH 127
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BLAST of mRNA_F-serratus_M_contig6845.17897.1 vs. uniprot
Match: A0A6H5KFX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 7.950e-9
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  185 VWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAEDYVENARLTLGRSGV 367
            +WG+ + E+V  R+ EY QASS+LSFAA GQ+FTD +L +L  RA DYV  A  T   + V
Sbjct:    1 MWGDVSPEEVRDRVLEYFQASSSLSFAANGQEFTDLDLDELHTRAGDYVSVAMTTAFNANV 61
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BLAST of mRNA_F-serratus_M_contig6845.17897.1 vs. uniprot
Match: D7G6T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T4_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.060e-7
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 GNSLYGPGVAPLKDIVKNYAALTGSHKALLASIQLVVFRGILSSVGAM 144
            G+S+Y  G APLKDIV +YA+LTGS+K LLASI L+VFR +L S  ++
Sbjct:  703 GSSIYPVGEAPLKDIVTDYASLTGSNKWLLASIMLLVFRPVLHSAASL 750
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BLAST of mRNA_F-serratus_M_contig6845.17897.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 4.100e-5
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   10 LYGPGVAPLKDIVKNYAALTGSHKALLASIQLVVFRGILSSVGAMPVALN 159
            LY PG   +KDIV NYA+LTGS K  L SI L+VFR +L +V AM   +N
Sbjct:  858 LYPPGTGKIKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQNVPAMRRNMN 907
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BLAST of mRNA_F-serratus_M_contig6845.17897.1 vs. uniprot
Match: A0A6H5JMI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 5.420e-5
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:   10 LYGPGVAPLKDIVKNYAALTGSHKALLASIQLVVFRGILSSVGAM 144
            LY PG   LKDIV NYA+LTGS K  L SI L+VFR +L  V AM
Sbjct:  169 LYPPGTEKLKDIVTNYASLTGSDKWTLQSIMLLVFRMVLQDVPAM 213
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6845.17897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FZ46_ECTSI5.150e-2361.25Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K953_9PHAE6.320e-2259.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN48_9PHAE3.990e-1953.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM61_9PHAE3.770e-1451.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFX1_9PHAE7.950e-950.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6T4_ECTSI7.060e-760.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9M0_9PHAE4.100e-556.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMI6_9PHAE5.420e-562.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6845contigF-serratus_M_contig6845:9549..10530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size418
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6845.17897.1prot_F-serratus_M_contig6845.17897.1Fucus serratus malepolypeptideF-serratus_M_contig6845 9549..10068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932092.801411-CDS-F-serratus_M_contig6845:9548..96381622932092.801411-CDS-F-serratus_M_contig6845:9548..9638Fucus serratus maleCDSF-serratus_M_contig6845 9549..9638 -
1690964143.4249308-CDS-F-serratus_M_contig6845:9548..96381690964143.4249308-CDS-F-serratus_M_contig6845:9548..9638Fucus serratus maleCDSF-serratus_M_contig6845 9549..9638 -
1622932092.8175921-CDS-F-serratus_M_contig6845:9912..100681622932092.8175921-CDS-F-serratus_M_contig6845:9912..10068Fucus serratus maleCDSF-serratus_M_contig6845 9913..10068 -
1690964143.4403477-CDS-F-serratus_M_contig6845:9912..100681690964143.4403477-CDS-F-serratus_M_contig6845:9912..10068Fucus serratus maleCDSF-serratus_M_contig6845 9913..10068 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932092.8348258-UTR-F-serratus_M_contig6845:10068..100961622932092.8348258-UTR-F-serratus_M_contig6845:10068..10096Fucus serratus maleUTRF-serratus_M_contig6845 10069..10096 -
1690964143.4537814-UTR-F-serratus_M_contig6845:10068..100961690964143.4537814-UTR-F-serratus_M_contig6845:10068..10096Fucus serratus maleUTRF-serratus_M_contig6845 10069..10096 -
1622932092.8567154-UTR-F-serratus_M_contig6845:10386..105301622932092.8567154-UTR-F-serratus_M_contig6845:10386..10530Fucus serratus maleUTRF-serratus_M_contig6845 10387..10530 -
1690964143.4653351-UTR-F-serratus_M_contig6845:10386..105301690964143.4653351-UTR-F-serratus_M_contig6845:10386..10530Fucus serratus maleUTRF-serratus_M_contig6845 10387..10530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6845.17897.1

>prot_F-serratus_M_contig6845.17897.1 ID=prot_F-serratus_M_contig6845.17897.1|Name=mRNA_F-serratus_M_contig6845.17897.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MCGDVWGNSNDEDVLKRLKEYLQASSALSFAARGQQFTDEELRQLRIRAE
DYVENARLTLGRSGVRTSTHNWIHWTDTILNH
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mRNA from alignment at F-serratus_M_contig6845:9549..10530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6845.17897.1 ID=mRNA_F-serratus_M_contig6845.17897.1|Name=mRNA_F-serratus_M_contig6845.17897.1|organism=Fucus serratus male|type=mRNA|length=982bp|location=Sequence derived from alignment at F-serratus_M_contig6845:9549..10530- (Fucus serratus male)
GGGAATAGTCTATACGGCCCAGGAGTTGCACCTTTAAAGGATATCGTCAA
GAACTACGCAGCTCTTACCGGTTCGCACAAGGCTCTTCTCGCGTCGATTC
AGCTCGTCGTGTTCCGAGGAATACTTTCTTCCGTTGGAGCCATGGTGAGG
GAGATACGAGCTTGACTCTATTTTCACCATGCTGGGCTTAGACAATGACA
GAAAAAACATCTAAAATCTTCAGGTTTTACATGTTTCAAAACGTTCAAGG
GATATTTCCTTGCTAAGCGAGACACAGCAGCGACACAGGTAATAATGTAA
TGTGCTTCCTCGCAGAGCGCTGGTGAAACCATCTCTATATCGACCGTGCG
CTAGTTTATAGTCGCACAGTCTCATGTCTCATGTCTCTGCTCTCGTCTGA
CCTATTCGTAATCCTCACAGCTTATTTCATAAAGCCCGTGGCTCTAAATC
AGATGCGTCGGGATGTGTGGGGATGTGTGGGGAAATTCGAACGACGAGGA
CGTGCTCAAGCGATTGAAGGAGTATCTTCAGGCGTCATCTGCTCTCTCTT
TCGCGGCCCGGGGCCAGCAGTTCACGGATGAAGAACTCCGTCAGCTGCGA
ATCAGGGCAGAGGACTACGTAAGCCTCTCGTACGTTGCACACCATTTTAC
TCCCGAGCGCGGCTATCAAGTAGTTTGTAGCAAGGTTTGTGTTGATAGTT
CCATACTCGTCAATCTGTCGCGTGTTAAGAGACTTCGTCGTTAAACTCTA
CCGCCGCGTATATCACCGTCGTCCATTCGGCGAAGTGTATTTCTTCTGAA
CTAAAAAGAGAGCACCATTTTTTGCTCCCGGAACTCTGGCGCATATGGTT
GCCGTACTAACCAATATTCTTCGCGATCTGGTTCCATTGCAGGTTGAAAA
TGCGAGACTAACACTCGGTCGGTCGGGCGTGAGAACAAGCACCCACAATT
GGATACACTGGACGGACACTATCCTCAATCAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6845:9549..10530-

>mRNA_F-serratus_M_contig6845.17897.1 ID=mRNA_F-serratus_M_contig6845.17897.1|Name=mRNA_F-serratus_M_contig6845.17897.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig6845:9549..10530- (Fucus serratus male)
ATGTGTGGGGATGTGTGGGGAAATTCGAACGACGAGGACGTGCTCAAGCG
ATTGAAGGAGTATCTTCAGGCGTCATCTGCTCTCTCTTTCGCGGCCCGGG
GCCAGCAGTTCACGGATGAAGAACTCCGTCAGCTGCGAATCAGGGCAGAG
GACTACATGTGTGGGGATGTGTGGGGAAATTCGAACGACGAGGACGTGCT
CAAGCGATTGAAGGAGTATCTTCAGGCGTCATCTGCTCTCTCTTTCGCGG
CCCGGGGCCAGCAGTTCACGGATGAAGAACTCCGTCAGCTGCGAATCAGG
GCAGAGGACTACGTTGAAAATGCGAGACTAACACTCGGTCGGTCGGGCGT
GAGAACAAGCACCCACAATTGGATACACTGGACGGACACTATCCTCAATC
ATGTTGAAAATGCGAGACTAACACTCGGTCGGTCGGGCGTGAGAACAAGC
ACCCACAATTGGATACACTGGACGGACACTATCCTCAATCAT
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