mRNA_F-serratus_M_contig684.17896.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig684.17896.1
Unique NamemRNA_F-serratus_M_contig684.17896.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: D7FHL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL5_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.990e-21
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    4 DFYSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLVAD 240
            D YSKAGGVA EV++ IRTVASL +EE ELKRY  HL+GA  +GVK G+ +G G   LF S +++YALAFW+GT  VAD
Sbjct:  223 DHYSKAGGVATEVLSGIRTVASLNSEEIELKRYGKHLDGAYHAGVKEGMAKGLGNGMLFTSFYMSYALAFWFGTKQVAD 301          
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.050e-21
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    4 DFYSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLVAD 240
            D YSKAGGVA EV++ IRTVASL +EE ELKRY  HL+GA  +GVK G+ +G G   LF S +++YALAFW+GT  VAD
Sbjct:  212 DHYSKAGGVATEVLSGIRTVASLNSEEIELKRYGKHLDGAYHAGVKEGMAKGLGNGMLFTSFYMSYALAFWFGTKQVAD 290          
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: A0A6H5JGF0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.960e-21
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    4 DFYSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLVAD 240
            D YSKAGGVA EV++ IRTVASL +EE EL+RY  HL+GA  +GVK G+ +G G   LF S +++YALAFW+GT  VAD
Sbjct:  322 DHYSKAGGVATEVLSGIRTVASLNSEEIELERYGKHLDGAYHAGVKEGMAKGLGNGMLFTSFYMSYALAFWFGTKQVAD 400          
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: A0A6H5L6B5_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.810e-20
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   10 YSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLVADDLENNCTSGCATG 279
            YSKAGGVANEVI SIRTVASLTAEENE+ RYS HL+GAE++G+K                      AFWYGT LVADD+E+      ATG
Sbjct:   31 YSKAGGVANEVIASIRTVASLTAEENEMDRYSAHLDGAEKAGIKXXXXXXXXXXXXXXXXXXXXXXAFWYGTKLVADDIESXXXXXXATG 120          
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: A0A6H5J5U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5U8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.150e-19
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    4 DFYSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLVA 237
            D YSKAGGVA EV++ IRTVASL +EE EL+RY  HL+GA  +GVK G+ +G G   LF S +++YALAFW+GT  V+
Sbjct:  166 DHYSKAGGVATEVLSGIRTVASLNSEEIELERYGKHLDGAYHAGVKEGMAKGLGNGMLFTSFYMSYALAFWFGTKQVS 243          
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: A0A8J1W6W6_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1W6W6_9DINO)

HSP 1 Score: 86.3 bits (212), Expect = 1.250e-17
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    7 FYSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLVADDLENNCTSGCATG 279
            +Y KAGGVA+EV  +++TV S  AE+ EL RYS HLE A    VK+G   G    +L+   FL YALAFWYG+ LV D +EN  T    TG
Sbjct:  270 YYVKAGGVADEVFGAVKTVISFGAEQAELDRYSIHLESARLGKVKSGTRIGMQVGSLWSCCFLLYALAFWYGSILVGDKIENQRTGEAFTG 360          
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: D8LS12_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS12_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.700e-17
Identity = 48/90 (53.33%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   10 YSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLVADDLENNCTSGCATG 279
            YSKAGGVANEVI SIRTVASLTAEENE+ RYS HL+GAE++G+K                        WYGT LVADD+        ATG
Sbjct:  246 YSKAGGVANEVIASIRTVASLTAEENEMDRYSGHLDGAEKAGIKXXXXXXXXXXXXXXXXXXXXXXXXWYGTKLVADDIXXXXXXXXATG 335          
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: UPI0003F0DB90 (multidrug resistance protein 3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0DB90)

HSP 1 Score: 82.4 bits (202), Expect = 2.720e-16
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    4 DFYSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLV 234
            D Y+KAGGVA E++++IRTVA+   EE E +RY T+L  A++ G+K G+ +G+G    F   F TYAL FWYG+TL+
Sbjct:  303 DSYAKAGGVAEEILSAIRTVAAFGGEEKESRRYDTNLIAAKKMGIKKGIVQGAGMGITFLLVFSTYALGFWYGSTLI 379          
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: A0A4D9CQ92_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ92_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.130e-16
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   10 YSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLVADDLENNCT----SGCATG 279
            Y+KAGGVANE + +IRTVASL AE   ++ Y+  +E AER G+   +  G+    LF SAF  YALAFWYG+  VAD+L   C     +GC TG
Sbjct:  227 YAKAGGVANEALGAIRTVASLGAERKFMEAYNRLIEEAERVGIGKSVKLGAANGLLFSSAFFIYALAFWYGSLQVADNLP--CVLAGGTGCITG 318          
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Match: H2ZR91_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2ZR91_CIOSA)

HSP 1 Score: 80.5 bits (197), Expect = 1.330e-15
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    4 DFYSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGLTRGSGAATLFGSAFLTYALAFWYGTTLV 234
            D Y+KAG VA EVI+SIRTV +   +  E +RY  +LE A + G++ G+T G+G  T+F   F TY LAFWYG+TLV
Sbjct:  202 DAYAKAGAVAEEVISSIRTVVAFDGQAKECERYEENLEAARKVGIQKGITSGAGLGTVFLIMFSTYGLAFWYGSTLV 278          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig684.17896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHL5_ECTSI1.990e-2162.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHL4_ECTSI2.050e-2162.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGF0_9PHAE6.960e-2160.76ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5L6B5_9PHAE1.810e-2056.67ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5J5U8_9PHAE1.150e-1958.97ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A8J1W6W6_9DINO1.250e-1750.55Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
D8LS12_ECTSI1.700e-1753.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI0003F0DB902.720e-1650.65multidrug resistance protein 3-like n=1 Tax=Saccog... [more]
A0A4D9CQ92_9STRA7.130e-1650.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
H2ZR91_CIOSA1.330e-1551.95Uncharacterized protein n=1 Tax=Ciona savignyi Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig684contigF-serratus_M_contig684:412119..413076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue9.9e-19
Seed eggNOG ortholog2880.D7FHL4
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0055@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Exons2
Model size289
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932092.7421978-CDS-F-serratus_M_contig684:412118..4122611622932092.7421978-CDS-F-serratus_M_contig684:412118..412261Fucus serratus maleCDSF-serratus_M_contig684 412119..412261 -
1690964143.399357-CDS-F-serratus_M_contig684:412118..4122611690964143.399357-CDS-F-serratus_M_contig684:412118..412261Fucus serratus maleCDSF-serratus_M_contig684 412119..412261 -
1622932092.7580385-CDS-F-serratus_M_contig684:412931..4130761622932092.7580385-CDS-F-serratus_M_contig684:412931..413076Fucus serratus maleCDSF-serratus_M_contig684 412932..413076 -
1690964143.4133022-CDS-F-serratus_M_contig684:412931..4130761690964143.4133022-CDS-F-serratus_M_contig684:412931..413076Fucus serratus maleCDSF-serratus_M_contig684 412932..413076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig684.17896.1prot_F-serratus_M_contig684.17896.1Fucus serratus malepolypeptideF-serratus_M_contig684 412119..413076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig684.17896.1

>prot_F-serratus_M_contig684.17896.1 ID=prot_F-serratus_M_contig684.17896.1|Name=mRNA_F-serratus_M_contig684.17896.1|organism=Fucus serratus male|type=polypeptide|length=96bp
ADFYSKAGGVANEVITSIRTVASLTAEENELKRYSTHLEGAERSGVKAGL
TRGSGAATLFGSAFLTYALAFWYGTTLVADDLENNCTSGCATGVS*
back to top

mRNA from alignment at F-serratus_M_contig684:412119..413076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig684.17896.1 ID=mRNA_F-serratus_M_contig684.17896.1|Name=mRNA_F-serratus_M_contig684.17896.1|organism=Fucus serratus male|type=mRNA|length=958bp|location=Sequence derived from alignment at F-serratus_M_contig684:412119..413076- (Fucus serratus male)
GCTGATTTCTACTCTAAGGCTGGCGGCGTCGCCAACGAGGTAATCACCTC CATTCGGACGGTCGCCTCCCTCACCGCCGAAGAAAACGAGCTCAAGCGGT ACTCCACACACCTGGAAGGCGCAGAGCGATCGGGCGTCAAGGCTGGTGAG AGGCGGTAGGAGCAAAGAGAGTAAGAACTAAATGAAAAGACCCTTGCTTG CGGAATGAGGTTTTGAGCTCGGGTGCCGTGCTTTGACGACAGGAGATGAC AACAACGTTTCGTGGTTAGACAAGGCTGCTGTTTTTATCAATTTTCAGCT CCCGATTGTTAGTTGAGAGCTTCGGAGTTGACCCCGTCGACGAAAACGTA AGGGGGGTCACGCGCTTGTTATGTGGCTGTATAAACTCGTGGCAGTGAGA AGATGCTTCATTATGGGATACCACAAGCGTATGACCGGATCTAGTACCAA AGTTCCGATAACACTGGTATCGTTCCAGGCTTCTCCGCGCTGGTTGATCC GACCCCCGGCAAAATGTGTATATGTGGAACCGAGGCCATATATCCAATGT TCAGGCTTACCGGTCAAGTAGTGACAGACTCAAGGGGACTGACTGTTAGG GTTGGGACATGATGACTGGTAAAAGGAAGCAGTCATCTCACGGTTTCATA CGGCGTAGGGGTTCCCTTGCGACTTTTGCCTTTCACCGCTCCGTAACCTC TAGCGGGCCTAACCCGCAAGTAAGCCATGCGACCCTACTCCACTTGGAAT CCTCACAAGCGCGGCTTTTCATATTCTATCTGAATTCCCTCTCCCGCCGC CGGCGATGGCCGCAGGGTTGACCCGAGGTTCGGGAGCTGCTACGCTATTT GGGAGTGCCTTTCTCACCTATGCTCTTGCCTTTTGGTATGGCACCACCTT GGTTGCCGATGATCTCGAGAACAACTGTACCAGCGGATGCGCAACTGGGG TGAGCTAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig684:412119..413076-

>mRNA_F-serratus_M_contig684.17896.1 ID=mRNA_F-serratus_M_contig684.17896.1|Name=mRNA_F-serratus_M_contig684.17896.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig684:412119..413076- (Fucus serratus male)
GCTGATTTCTACTCTAAGGCTGGCGGCGTCGCCAACGAGGTAATCACCTC
CATTCGGACGGTCGCCTCCCTCACCGCCGAAGAAAACGAGCTCAAGCGGT
ACTCCACACACCTGGAAGGCGCAGAGCGATCGGGCGTCAAGGCTGGCTGA
TTTCTACTCTAAGGCTGGCGGCGTCGCCAACGAGGTAATCACCTCCATTC
GGACGGTCGCCTCCCTCACCGCCGAAGAAAACGAGCTCAAGCGGTACTCC
ACACACCTGGAAGGCGCAGAGCGATCGGGCGTCAAGGCTGGGTTGACCCG
AGGTTCGGGAGCTGCTACGCTATTTGGGAGTGCCTTTCTCACCTATGCTC
TTGCCTTTTGGTATGGCACCACCTTGGTTGCCGATGATCTCGAGAACAAC
TGTACCAGCGGATGCGCAACTGGGGTGAGCTAGGGTTGACCCGAGGTTCG
GGAGCTGCTACGCTATTTGGGAGTGCCTTTCTCACCTATGCTCTTGCCTT
TTGGTATGGCACCACCTTGGTTGCCGATGATCTCGAGAACAACTGTACCA
GCGGATGCGCAACTGGGGTGAGCTAG
back to top