mRNA_F-serratus_M_contig684.17891.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig684.17891.1
Unique NamemRNA_F-serratus_M_contig684.17891.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA)

HSP 1 Score: 249 bits (637), Expect = 3.670e-65
Identity = 128/171 (74.85%), Postives = 145/171 (84.80%), Query Frame = 2 
Query:  776 LRF*MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYRQQTDKF 1288
            LR  +GYVGQEPVLFTG+I+ENI +G P A++EE+++AA  A AHDFI+SF DGYETDVGEKSALLSGGQKQRIAIARAI+ NP ILLLDEATSALDNESERQVQAALD+LQS + RTTLVVAHRLTT+R AD+IAV+  G V ELG H ELMA  G  Y KLYR+QTD F
Sbjct: 1049 LRSNIGYVGQEPVLFTGTIKENITKGNPDATMEEVENAARAANAHDFIMSFTDGYETDVGEKSALLSGGQKQRIAIARAILRNPNILLLDEATSALDNESERQVQAALDHLQSLQRRTTLVVAHRLTTIRNADKIAVLGTGAVRELGTHDELMATPGSTYGKLYRRQTDMF 1219
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA)

HSP 1 Score: 247 bits (631), Expect = 3.200e-64
Identity = 127/171 (74.27%), Postives = 144/171 (84.21%), Query Frame = 2 
Query:  776 LRF*MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYRQQTDKF 1288
            LR  MGYVGQEPVLFTG+IR+NI +G P A++EE+++A   A AHDFI+SF DGYETDVGEKSALLSGGQKQRIAIARAI+ NP I+LLDEATSALDNESERQVQAALD LQS + RTTLVVAHRLTT+R AD+IAV+  G V ELG H ELMA+ G  Y KLYRQQT+ F
Sbjct: 1193 LRSNMGYVGQEPVLFTGTIRDNITKGNPDATVEEVENATRAANAHDFIMSFTDGYETDVGEKSALLSGGQKQRIAIARAILRNPNIVLLDEATSALDNESERQVQAALDRLQSLQRRTTLVVAHRLTTIRNADKIAVLGGGCVRELGTHNELMALPGSTYGKLYRQQTEMF 1363
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: A0A836CDG9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG9_9STRA)

HSP 1 Score: 240 bits (613), Expect = 4.420e-62
Identity = 127/171 (74.27%), Postives = 142/171 (83.04%), Query Frame = 2 
Query:  776 LRF*MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYRQQTDKF 1288
            LR  +GYVGQEPVLFTG+IRENI RG P AS EE++ AA  A AH+FI SF+ GY+T+VGEKSALLSGGQKQRIAIARAI+ NP ILLLDEATSALDNESERQVQ ALD+LQS + RTTLVVAHRLTTV  AD+IAV+  G V ELG H ELMA+ G  YAKLYR+QTD F
Sbjct: 1056 LRSNIGYVGQEPVLFTGTIRENITRGNPDASTEEVERAAKAANAHEFIKSFEHGYDTNVGEKSALLSGGQKQRIAIARAILRNPAILLLDEATSALDNESERQVQMALDHLQSLQRRTTLVVAHRLTTVHNADKIAVLGGGKVCELGTHDELMALPGSNYAKLYRRQTDAF 1226
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: A0A836CNL1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL1_9STRA)

HSP 1 Score: 237 bits (605), Expect = 7.360e-61
Identity = 121/171 (70.76%), Postives = 145/171 (84.80%), Query Frame = 2 
Query:  776 LRF*MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYRQQTDKF 1288
            LR  +GYVGQEPVLFTGSIR+NI RG P A+ EEI+SAA  A AHDF+ +F +GY+TDVGEKSALLSGGQKQRIAIARAI+ NP ILLLDEATSALDNESERQVQAALD L++ + RTTLVVAHRL+T+R AD+IAV++ G V ELG+H +L+++ GG+YA LY +QT  F
Sbjct: 1373 LRSQVGYVGQEPVLFTGSIRDNIARGHPSATAEEIESAARAANAHDFVTAFAEGYDTDVGEKSALLSGGQKQRIAIARAILKNPAILLLDEATSALDNESERQVQAALDRLRALQKRTTLVVAHRLSTIRNADKIAVVTGGCVRELGSHDDLVSLPGGLYASLYNRQTAAF 1543
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.960e-58
Identity = 119/174 (68.39%), Postives = 142/174 (81.61%), Query Frame = 2 
Query:  776 LRF*MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYRQQTDKFVQE 1297
            LR  +GYVGQEPVLF G+IRENI +G PGAS + IQ AA  A AHDFI+ F++GY+ DVGEKSALLSGGQKQRIAIARAI+NNP ILLLDEATSALDNESE+ VQ ALD LQ+++ RTTL VAHRLTT+R +D+IAV++ GGV ELG H EL+A+ G +Y+ L+ QQT K   E
Sbjct: 1032 LRSQIGYVGQEPVLFQGTIRENIAKGDPGASDDRIQEAAKAANAHDFIMDFQEGYDADVGEKSALLSGGQKQRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAKQKRTTLTVAHRLTTIRNSDKIAVLNGGGVQELGTHDELLALKG-LYSTLWNQQTSKLTGE 1204
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: A0A835ZHI0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI0_9STRA)

HSP 1 Score: 220 bits (561), Expect = 1.120e-56
Identity = 119/172 (69.19%), Postives = 139/172 (80.81%), Query Frame = 2 
Query:  776 LRF*MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQS-EKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYRQQTDKF 1288
            LR  +GYVGQEPVLFTGSIR+NI RG P A+ EEI+SAA  A AHDF+ +F +GY+TDVGEKSALLSGGQKQRIAIARAI+ NP ILLLDEATSALDNESERQVQAALD L++ +KC TTLVVAHRL+T+R AD+IAV        LG+H +L+ + GG+YA LY  QT  F
Sbjct:  640 LRSQVGYVGQEPVLFTGSIRDNIARGHPSATAEEIESAARAANAHDFVTAFAEGYDTDVGEKSALLSGGQKQRIAIARAILKNPAILLLDEATSALDNESERQVQAALDCLRALQKC-TTLVVAHRLSTIRNADKIAV--------LGSHDDLVILSGGLYASLYNHQTAAF 802
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: A0A7S3XS79_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS79_HETAK)

HSP 1 Score: 201 bits (511), Expect = 1.050e-54
Identity = 111/171 (64.91%), Postives = 127/171 (74.27%), Query Frame = 2 
Query:  788 MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYR-----QQTDK 1285
            +GYVGQEPVLF G++R N+  G+PGA+  E+Q AA  A AH FI +F  GYETDVGE    LSGGQKQRIAIARA+I  P+ILLLDEATSALDNESER VQ ALD +Q+    TTLVVAHRLTTV+  DRIAVIS G V E+G H+EL+A  GGIYA L       Q TDK
Sbjct:   65 IGYVGQEPVLFAGTVRTNVRSGRPGATDAEVQQAAEAANAHGFIQAFPQGYETDVGEAGVQLSGGQKQRIAIARALIKAPKILLLDEATSALDNESERVVQEALDRIQAASAFTTLVVAHRLTTVQNCDRIAVISGGQVKEIGPHKELLA-KGGIYASLASHGATAQTTDK 234
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: A0A662X669_9STRA (ABC transporter domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X669_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.030e-54
Identity = 103/167 (61.68%), Postives = 128/167 (76.65%), Query Frame = 2 
Query:  776 LRF*MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYRQQ 1276
            LR  +  V QEPVLF G+I ENI  GKPGA+ E++  AA  A A+DFI +F  G++TDVG++ A +SGGQKQRIAIARAI+ +P++LLLDEATSALDNESER VQA+LD L + K RTT+VVAHRL+TVRKAD IAV   G + E G+H+ELM + GGIY  +  QQ
Sbjct:   26 LRERISLVSQEPVLFAGTIAENIALGKPGATREQVVEAAKSANAYDFISNFPLGFDTDVGDRGAQVSGGQKQRIAIARAILRDPDVLLLDEATSALDNESERVVQASLDTLLALKQRTTIVVAHRLSTVRKADVIAVTQDGAIVEQGSHEELMRVPGGIYRGMVEQQ 192
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: A0A418AFP6_9STRA (ABC transporter domain-containing protein (Fragment) n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A418AFP6_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.600e-54
Identity = 107/169 (63.31%), Postives = 124/169 (73.37%), Query Frame = 2 
Query:  776 LRF*MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYRQQTD 1282
            LR  +  V QEPVLF G+I ENI  GKPGA+ EEI+ AA KA AHDFI+ F D Y T VG++   +SGGQKQRIAIARAII +P ILLLDEATSALDNESER VQ +LD L   K RTT++VAHRL+TVR AD IAV+  G VAE G H EL+ I  GIYA L  +Q +
Sbjct:   12 LRQHISIVSQEPVLFVGTIGENIATGKPGATQEEIEEAAKKANAHDFIMQFPDKYNTAVGDRGVQVSGGQKQRIAIARAIIRDPAILLLDEATSALDNESERIVQDSLDQLLKLKRRTTIIVAHRLSTVRNADVIAVVDGGRVAEQGTHDELIGIPNGIYANLVSRQME 180
[Close]
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 3.170e-54
Identity = 116/171 (67.84%), Postives = 137/171 (80.12%), Query Frame = 2 
Query:  776 LRF*MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFII-SFKDGYETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQVQAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMAIDGGIYAKLYRQQTDK 1285
            LR  +GYVGQEPVLF G+IRENI +G P AS E IQ AA  A AHDFI+  F+ GYE +VGEKSALLSGGQKQRIAIARAI+ NP ILLLDEATSALDNESE+ VQ ALD LQ+++ RTTL VAHRLTT+R +D+IAV++ GGV ELG H EL+A+ G +Y+ L+ QQ  K
Sbjct: 1120 LRSQIGYVGQEPVLFQGTIRENIAKGDPSASDERIQEAAKAANAHDFILRDFQGGYEAEVGEKSALLSGGQKQRIAIARAILRNPPILLLDEATSALDNESEKVVQEALDQLQAKQKRTTLTVAHRLTTIRNSDKIAVLNGGGVQELGTHDELLALKG-LYSTLWNQQKSK 1289
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig684.17891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGZ9_9STRA3.670e-6574.85ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A835Z4J1_9STRA3.200e-6474.27ATP-binding cassette, sub-family B, member 1A n=2 ... [more]
A0A836CDG9_9STRA4.420e-6274.27ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A836CNL1_9STRA7.360e-6170.76P-loop containing nucleoside triphosphate hydrolas... [more]
D7FHL4_ECTSI1.960e-5868.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZHI0_9STRA1.120e-5669.19P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3XS79_HETAK1.050e-5464.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A662X669_9STRA2.030e-5461.68ABC transporter domain-containing protein (Fragmen... [more]
A0A418AFP6_9STRA2.600e-5463.31ABC transporter domain-containing protein (Fragmen... [more]
D7FHL1_ECTSI3.170e-5467.84ATP-binding cassette, sub-family B (MDR/TAP), memb... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig684contigF-serratus_M_contig684:147507..153328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.2
Seed ortholog evalue1.5e-57
Seed eggNOG ortholog2880.D7FHL4
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0055@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Exons9
Model size2339
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig684.17891.1prot_F-serratus_M_contig684.17891.1Fucus serratus malepolypeptideF-serratus_M_contig684 149045..151814 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932091.3050346-UTR-F-serratus_M_contig684:147506..1490441622932091.3050346-UTR-F-serratus_M_contig684:147506..149044Fucus serratus maleUTRF-serratus_M_contig684 147507..149044 -
1690964142.6293662-UTR-F-serratus_M_contig684:147506..1490441690964142.6293662-UTR-F-serratus_M_contig684:147506..149044Fucus serratus maleUTRF-serratus_M_contig684 147507..149044 -
1622932091.422904-UTR-F-serratus_M_contig684:152316..1523981622932091.422904-UTR-F-serratus_M_contig684:152316..152398Fucus serratus maleUTRF-serratus_M_contig684 152317..152398 -
1690964142.6941288-UTR-F-serratus_M_contig684:152316..1523981690964142.6941288-UTR-F-serratus_M_contig684:152316..152398Fucus serratus maleUTRF-serratus_M_contig684 152317..152398 -
1622932091.4394815-UTR-F-serratus_M_contig684:152682..1528011622932091.4394815-UTR-F-serratus_M_contig684:152682..152801Fucus serratus maleUTRF-serratus_M_contig684 152683..152801 -
1690964142.7059958-UTR-F-serratus_M_contig684:152682..1528011690964142.7059958-UTR-F-serratus_M_contig684:152682..152801Fucus serratus maleUTRF-serratus_M_contig684 152683..152801 -
1622932091.4679236-UTR-F-serratus_M_contig684:153244..1533281622932091.4679236-UTR-F-serratus_M_contig684:153244..153328Fucus serratus maleUTRF-serratus_M_contig684 153245..153328 -
1690964142.718839-UTR-F-serratus_M_contig684:153244..1533281690964142.718839-UTR-F-serratus_M_contig684:153244..153328Fucus serratus maleUTRF-serratus_M_contig684 153245..153328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932091.3183637-CDS-F-serratus_M_contig684:149044..1491081622932091.3183637-CDS-F-serratus_M_contig684:149044..149108Fucus serratus maleCDSF-serratus_M_contig684 149045..149108 -
1690964142.6408205-CDS-F-serratus_M_contig684:149044..1491081690964142.6408205-CDS-F-serratus_M_contig684:149044..149108Fucus serratus maleCDSF-serratus_M_contig684 149045..149108 -
1622932091.33031-CDS-F-serratus_M_contig684:149605..1497601622932091.33031-CDS-F-serratus_M_contig684:149605..149760Fucus serratus maleCDSF-serratus_M_contig684 149606..149760 -
1690964142.650211-CDS-F-serratus_M_contig684:149605..1497601690964142.650211-CDS-F-serratus_M_contig684:149605..149760Fucus serratus maleCDSF-serratus_M_contig684 149606..149760 -
1622932091.3508763-CDS-F-serratus_M_contig684:150227..1503201622932091.3508763-CDS-F-serratus_M_contig684:150227..150320Fucus serratus maleCDSF-serratus_M_contig684 150228..150320 -
1690964142.6591988-CDS-F-serratus_M_contig684:150227..1503201690964142.6591988-CDS-F-serratus_M_contig684:150227..150320Fucus serratus maleCDSF-serratus_M_contig684 150228..150320 -
1622932091.3717878-CDS-F-serratus_M_contig684:151075..1511351622932091.3717878-CDS-F-serratus_M_contig684:151075..151135Fucus serratus maleCDSF-serratus_M_contig684 151076..151135 -
1690964142.6680243-CDS-F-serratus_M_contig684:151075..1511351690964142.6680243-CDS-F-serratus_M_contig684:151075..151135Fucus serratus maleCDSF-serratus_M_contig684 151076..151135 -
1622932091.389055-CDS-F-serratus_M_contig684:151480..1516061622932091.389055-CDS-F-serratus_M_contig684:151480..151606Fucus serratus maleCDSF-serratus_M_contig684 151481..151606 -
1690964142.676589-CDS-F-serratus_M_contig684:151480..1516061690964142.676589-CDS-F-serratus_M_contig684:151480..151606Fucus serratus maleCDSF-serratus_M_contig684 151481..151606 -
1622932091.405882-CDS-F-serratus_M_contig684:151796..1518141622932091.405882-CDS-F-serratus_M_contig684:151796..151814Fucus serratus maleCDSF-serratus_M_contig684 151797..151814 -
1690964142.6853526-CDS-F-serratus_M_contig684:151796..1518141690964142.6853526-CDS-F-serratus_M_contig684:151796..151814Fucus serratus maleCDSF-serratus_M_contig684 151797..151814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig684.17891.1

>prot_F-serratus_M_contig684.17891.1 ID=prot_F-serratus_M_contig684.17891.1|Name=mRNA_F-serratus_M_contig684.17891.1|organism=Fucus serratus male|type=polypeptide|length=172bp
MGYVGQEPVLFTGSIRENIERGKPGASLEEIQSAATKAFAHDFIISFKDG
YETDVGEKSALLSGGQKQRIAIARAIINNPEILLLDEATSALDNESERQV
QAALDNLQSEKCRTTLVVAHRLTTVRKADRIAVISQGGVAELGNHQELMA
IDGGIYAKLYRQQTDKFVQEK*
back to top

mRNA from alignment at F-serratus_M_contig684:147507..153328-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig684.17891.1 ID=mRNA_F-serratus_M_contig684.17891.1|Name=mRNA_F-serratus_M_contig684.17891.1|organism=Fucus serratus male|type=mRNA|length=5822bp|location=Sequence derived from alignment at F-serratus_M_contig684:147507..153328- (Fucus serratus male)
GCTGGTGCGAAGGGGCCATCGAAGGGCAGCGCGGTGGAGTTCTTGGACGT
TAAGTTCACCTACCCGAGGCGACCCGATGCACAGGCGAGGACACGCGTTA
CAAGAACAGCGAGAAAGAGTGGGGAAGAGACGGCCCCTCGCATGTGTGTC
AACAATCACCCCTACCTTAAGAACACTCTTTCCCATTTTATCCTTCAACT
CACCACTCCTCTTATACAACACGGCGAATGCGCTTATGCTTGTTGGCGGG
TTAGTCGAAGGACGATGTACCTCAACGCAAGAAGCGTTCCGACTGCTCAC
GCATGAATTATTTCGCTACGGTGGTAGTTAACATTGCGCCTGGATAAGAA
TCGCATTGACTTTGCGGCTTCTTCTCATTCAATCGCCGAAAAAGTATCTT
ACCTTTTCTTACATATTGCCAAATTTTTTTACAATCGGTAGCCGCTTCTA
CGCCTGACCCCCCTCCTCCTCCACGCCTTCCTCCCCAAACGGCTACGTTG
CACTAACCGTGCTATTTTATTCTGCAGGTATACGGATCGGAAAAATTCCC
GGACGGCTTTAACCTAAAGATTGGAGCAGGACAAACGGTGGGGCTCGTGG
GACCGTCCGGCGGTGGAAAATCAACTTGCATTCAGCTCCTTCTCAGGTGG
ACGGTAGGGGAGGGAGATGTTGTTGACGCCGATCCCGAGTCACAACATAA
CTTTTCGAGCGTCTTGCTGCCTTCCAGCAACGAACGACGATGAAGATTGA
GGATTTGTTCCGCGATTATCAAATATTCGGCGTGATAAGATTGAGATCTA
TAATATTTTGATCGGCGAATCAAGCGTTTTGACGAAGTAAACAGTAAATT
GGGATAAAGAAGCCATACCGAGGGACCTCCGTATACACATCACAGCACTG
TAGTACCCGACGATACCGTACACTGACCAGGTTCTACGACCCCTCGGAGG
GCAAGATCACGCTGGACGGCCGCGATACCAAGGAGTTCAACGTTCGCTGG
CTGCGCACCCAGGTACGACGATTCTTCAGGGGGTGGTCCTTTTTCTGTCC
CTGCTGCCCCACACCACGGCAGTTGTTTGTGCGACCCTCGCCTAGACCAC
GTTGTATCCCATCGCTCGTCGCAGACGGCCCTACCACGACTGTAGCTACA
TTTAAACGAAGGCAGGTTCAATGCGGGGCAGCCGGCGTGCCGGCGCGTCA
AGTTTAATGTTGCTCGTACATCTAGCGCTACGTTGGCGTTCGATGGGCCG
GAGGGATAGTTTCCTCTTCGTCGCTTGTCCTTGGGCTGCTTCTGATGTGG
TGCAGCGCTGCCATCAATACTGTCCAGGTCTGGAAGCCCTTCGCACTACA
GATGACACTCACCAACACATAAACCGCCGCGTTTCGCTCTCTATACTGAT
CTCTCTTCCGTCGTGCCCCTCTTTTATTCTCTGCTCTTCTGTGTCGGGTG
AACTCGTATTTGCCTCTGTTTGCTCTGGTCTTGGCTATGTTGTGGACTCC
GGCTGCGTTTTTAGATGGGCTACGTGGGTCAGGTATGCGTTTCGGACTTT
CCTTTCGAAATCTCGGTGCGCTCCAAAATAGTCATAGGGTCGATGACATG
GTCAGCTGTATCGATGTCTTGCCACCGTCGTACTACGTCGTGGGTCCACA
TCCGCCACATTTGCTTGGAACACACTCTCGGGTCAGCGTGGACCAACCCC
GCCCCTTGTCGTTTGCTGGCAGGAGCCCGTGCTCTTCACCGGCTCTATCA
GGGAGAACATCGAGCGGGGTAAGCCTGGAGCGTCGCTGGAAGAGATCCAG
AGCGCGGCCACGAAGGCTTTCGCACACGACTTTATCATCTCCTTCAAGGT
TAGTGTCATAGAGTTGAGGTCCGTTGACCCCAAGGGGGTACCAGGGTGGA
TATGTTCGTTGATTTCGTGGGGGCGGGGGATATTACTGTTGATCCTTGGT
CGTTTGCCTGTTGCAAACGCAAAAGTTTACTTGCTCTTCGGCATACCTTT
TTTAACCAACCTGGACAGAGCTTACCCCAATGGACCAGGTGGCTTGCGAT
TGCATCCACATTTTCTATCTCTTGCTTCCATATTCTCAGATGTTTGTTTT
GTTCCCTATTTAGAGCTTACGCTTGTCGCAGTCATTCGTTGCCATGACGT
AAGTTCTTCACACTTTCATTCTATTATTTCTCTCCTGCACCAGGACGGAT
ACGAAACTGACGTCGGTGAAAAAAGCGCCCTCCTCTCCGGTGGTCAGAAG
CAGGTAGCGTTTGTATGTCAGCATGCTTGTAGGGACTGTAGATGGGGTGT
TAAGGCGTGTTTGGTGAACGGCGTTTGGAATCGCGCGCGCTCGCGATCTT
ACATGCCACACTCAATTCCGGACGACTTCCACGACTTTGCTGCTGGTTTT
TTTGTGGGAGTTCGAGTTTCACGTGTAACTCACGAACTTTGGTGTGCTGG
CGAGAACAATCGGTTATGGTACGTGTTAAGGCTCTTGACGGATAGCGCAT
CCTTCTGGTGCTCGCTGGTCGGACGACTCTCTTGCGACCAGCTTGACGTG
CGCTTCGAGCGAGATAGAGACACTCGTTCGATACATTTCTGTTTTCGTTG
AACATGTTTTGAAGAAAAAGACAAAGCAAAGTACTGGTCGCCCCGGTAGC
TCAGAGGTACCTCGTAACCCTCTGACACGTTGGGACGTGAGTTCGATCTC
GGCAAACGGGATTTTTCTCACTAAAAGACAAAAAAAACTAAAATAAAAAT
GCCCAACGGGTGGAGAACGATTAATTCGTTAGTACACAAAATTCGACTTC
ACGGTCGACGAGGGAAAGGAGTGGCTGAATCCTTCTCGCGATAAAAATTA
AGGCTCGCACCGCAGAAGGAAGGTGGATGAAAAATCCTGTGTGACCTTCC
TTGGCTGGTATATCCATTGATGTCCAGAGCAGATGGGAAGAAAACACACA
ACACACAAAGTACCGACTTGCAAAACTGTCTGCCTCGTCAACATGTTGCG
ACGGTCAGCGAATCGCCATCGCTCGCGCCATCATCAACAACCCCGAGATC
CTTCTTCTCGACGAGGCCACTTCTGCTTTGGACAACGAGAGCGAACGCCA
GGCGAGTATGGTTATACTACTGCTGCTGCTGCTGCTGCTGCTCCGGTTGA
AAAGTTATGATGTATTCGACTCTAAGACCCATGCACTAGAGCTGCGACCG
AGGATGTAGTGATACAGCCTAGGATGGGTTGTTGATGACCGACCTGGTAG
GGTGCCAATGGATTCAACGGCTGAGATCTAGTCATGTCCCGCTTTCATTT
TTTTGCGTATAGCCACGTACTCACCGCGAGCAAATGCAGGCAAAACGGAG
GCAAACCTCTCTCGATATAGATGGCGCTACTTAAGCCAACCTTTCTGCGT
GTGAGCGCATAGTTATTGCTCGTCTCTTTGCTTTGATATGTGTACTATTC
AGCGACCCCTGCCGTGCATGAAAATCACGGTGACTTCTTTCTGAAGAATT
CGACGGTTACTACGTCCATAAAATCGCGATTTTCACCTTGTCTTGCTCTT
TCGTCGCTGTGGGTTTAGGTTCAGGCCGCTCTGGACAATCTGCAGTCAGA
GAAGTGCCGCACAACCCTCGTGGTGGCACACCGCCTGACCACGGTGCGCA
AAGCCGATCGCATTGCTGTCATCTCGCAGGGTGGCGTAGCAGAGCTTGGA
AACCACCAGGAGCTGATGGCGATGTAAGATATGTCAATACACCCTCGTCA
GAGGGAAGGGCTGAGAGTCTTGGGAAGATGTTATAAAGGACGCATTATTG
ATAGCCGTCGCATGAGGGGAGACACAGGAGACGAAATAATATTCAAAATA
TAACAGGGTACTCGTCAGAGACCCAGGATACTTGCCAAAGGACTGAATAC
GGGAGGGCCATATCATACGTGATAGGATGATCCTACAGAAGAGAATAACC
AGATGAACTAATCCCATCCAGAATTATGAATTATGATTCTCCCCCGGCTC
AGTATAAGCTATATATGTTCTGATAATATGGGCTTTCACCTTTACGTTCC
TACACTTGCGCTTCATTTCGCCCCGACTGTTCCGTGTACGCTGTCTCGAT
ATCTATCGAGTATTTTTTTATATTATCAACTTTAAACACTCTGTGTGGTA
CCTTTGTAAACCTCGAACGCTGCTGACGTATCTCCGGGATGTCATGTTTT
TCTTTGTCCCTTGTATCCAGAGATGGGGGCATATACGCCAAGCTTTATCG
GCAGCAGACGGATAAATTCGTGCAGGAAAAATGATCGGCGTAAAGCCACA
TAACCGCCGGTTCAGCGAAGGAAATGAGGACTCGGCAGTGTTGAGCGCCT
TCATGTGACAGCGAGAGTAAGGGATATACTGTAGATGAATACTTCCAGAG
AGGACTGAGATCCTCGAAGACGGTCGTAGGTATTTTCTTTTTCAATTATT
CTTTCTACATTTTCTTTTCGTTGTCTTTATTTTTATTTATTTATTCTTTT
TTAACAACAGAATACTCTGTGTGGTTGTTTCTATCGTTGACGACCGTTTG
CAAGAACATTGGAATCAATTATTTTCTCTCGAGGATCCCCGGAGCAGGGT
GTGAGCACGCGTGTTTTGAGCGCGCGACCGGTCGTTTCTACCTTCAGCCA
GACTGCCGCGCTTACTTCTCTGTACCCGATGCATTTTTTATAACTCTCGC
TGAGCTATTCAAATTTTTATTATTATAGTTATTTTTTGTTTTGCACACCT
CAAGCTTCTGAGGTCGTCCGTGCTCTCTCGTACACAATAGAGATCATTGT
TTAATCACACCCCTAAAACATACACAGAAATGCTGAACGCGTACAAGCCT
TTTTTTGGTGCACGCACGCCGAATCTTGACTGCGGTTAGATTTGGTTGGG
TTCAGTTGAAAGAGGGTTCAAATGAATAGAGTTGGATTGGTTTCGTTGGT
CCCGCCGCGTCGGAATTGGATATACGGCGCGGGCATCGGGTTGGGATTGA
GTTGTTTTGAATTGGTTGGGTTTTGAGTTGGGTTTCTCGGGCCGTTGCAA
TTTAGTAAACGACCCTGGCGTAAGGTTGGGTTGGTGGCTTCAGCGTTGGG
TTGGATTTCGCTGGCCATTGAGTGTTAAGGCTGTACTATACACGATTGAT
CCCCGATCCCCGTATTTTGCTTTTTATACTCCAAAATATTCTCGGTTTCA
ATTGTTTTGAAAAATGCGGTTGAATGCTTGCTTCAATGAAATGGCGCCAT
TTAGGTCATTTGCAGCTCTTCTCAAGGGTTGTACCCGCAGTTATGGCAGA
AATGGAGGTCAGCCACAAGAGGAGATGACTAACCCTCAAGGAATGAAAGT
GTTTGCTGTAGAGAGACGTTGTCTTCCTGAAGATTTCGTGTATTTTCCTG
CTCTGTGTGGAGTGCAATCGTCGCCACTCGTATTTTCTTCGAATCTGCCG
GCCGTTTAGGGTCCGCTGCAGTGGTAGGCGCCGGGGGAGACACTGTGCTT
GAGGTTCGCGTTCTCCTGAGCTGAGTGCTCGAGTTAGGTGACCGCTCTCT
TGTAAATCGTACATACCAGCTCACACGGACGCTTCAATTTCTCACACGGG
CCAAAACGGTTAAGAGTACGTCGAGGACGGTCGAGGACGGCGGCGGAGAG
CGTATGTGGTCAGGATGTGAACCAAAGCCTGTCTCAGCCGACTAAATACA
TTCCACTCACGGTACACAAAGCTCCCGAGCTCACGAAACCGCAAGCAGCA
TCGTAGTATGTGGGAGTTAGGTAGACATGGCCGCAGGAATTAGCACACGA
AACCGAGCTACGATGGAAAAAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig684:147507..153328-

>mRNA_F-serratus_M_contig684.17891.1 ID=mRNA_F-serratus_M_contig684.17891.1|Name=mRNA_F-serratus_M_contig684.17891.1|organism=Fucus serratus male|type=CDS|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig684:147507..153328- (Fucus serratus male)
ATGGGCTACGTGGGTCAGATGGGCTACGTGGGTCAGGAGCCCGTGCTCTT
CACCGGCTCTATCAGGGAGAACATCGAGCGGGGTAAGCCTGGAGCGTCGC
TGGAAGAGATCCAGAGCGCGGCCACGAAGGCTTTCGCACACGACTTTATC
ATCTCCTTCAAGGAGCCCGTGCTCTTCACCGGCTCTATCAGGGAGAACAT
CGAGCGGGGTAAGCCTGGAGCGTCGCTGGAAGAGATCCAGAGCGCGGCCA
CGAAGGCTTTCGCACACGACTTTATCATCTCCTTCAAGGACGGATACGAA
ACTGACGTCGGTGAAAAAAGCGCCCTCCTCTCCGGTGGTCAGAAGCAGGA
CGGATACGAAACTGACGTCGGTGAAAAAAGCGCCCTCCTCTCCGGTGGTC
AGAAGCAGCGAATCGCCATCGCTCGCGCCATCATCAACAACCCCGAGATC
CTTCTTCTCGACGAGGCCACTTCTGCTTTGGACAACGAGAGCGAACGCCA
GCGAATCGCCATCGCTCGCGCCATCATCAACAACCCCGAGATCCTTCTTC
TCGACGAGGCCACTTCTGCTTTGGACAACGAGAGCGAACGCCAGGTTCAG
GCCGCTCTGGACAATCTGCAGTCAGAGAAGTGCCGCACAACCCTCGTGGT
GGCACACCGCCTGACCACGGTGCGCAAAGCCGATCGCATTGCTGTCATCT
CGCAGGGTGGCGTAGCAGAGCTTGGAAACCACCAGGAGCTGATGGCGATG
TTCAGGCCGCTCTGGACAATCTGCAGTCAGAGAAGTGCCGCACAACCCTC
GTGGTGGCACACCGCCTGACCACGGTGCGCAAAGCCGATCGCATTGCTGT
CATCTCGCAGGGTGGCGTAGCAGAGCTTGGAAACCACCAGGAGCTGATGG
CGATAGATGGGGGCATATACGCCAAGCTTTATCGGCAGCAGACGGATAAA
TTCGTGCAGGAAAAATGAAGATGGGGGCATATACGCCAAGCTTTATCGGC
AGCAGACGGATAAATTCGTGCAGGAAAAATGA
back to top