mRNA_F-serratus_M_contig684.17892.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A6H5L6B5_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B5_9PHAE) HSP 1 Score: 132 bits (333), Expect = 2.810e-34 Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 3
Query: 3 IRETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
+R GEKWS+GFV LA +AIVGH TM+YGFSVAGERLTRRLREI F+AILRHD+GWFDK++N+VG LTT LEED+AK+
Sbjct: 454 VRSVGEKWSLGFVGLAAVAIVGHCTMAYGFSVAGERLTRRLREIGFRAILRHDIGWFDKEENAVGALTTQLEEDTAKI 531
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: D8LS12_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS12_ECTSI) HSP 1 Score: 131 bits (329), Expect = 9.730e-34 Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 3
Query: 3 IRETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
+R GEKWS+GFV LA +AIVGH M+YGFSVAGERLTRRLREI F+AILRHD+GWFDK++N+VG LTT LEED+AKV
Sbjct: 769 VRSVGEKWSLGFVGLAAVAIVGHCAMAYGFSVAGERLTRRLREIGFRAILRHDIGWFDKEENAVGALTTQLEEDTAKV 846
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A836CDG9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG9_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.480e-24 Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 3
Query: 6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
RETG W++GFV LA+ A GH +++GF+ +GER+ RRLRE AF AI+RHD+GWFD D+NS G LTT LEED+ V
Sbjct: 688 RETGNWWALGFVFLALAAFCGHIALAWGFATSGERMVRRLRESAFTAIVRHDIGWFDFDENSTGALTTRLEEDANAV 764
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A836CNL1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL1_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 2.170e-22 Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 3
Query: 3 IRETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSA 230
I++ G W + FV LA +VGH + GF+V+GERLTRR+RE+AFKAILRHD+GWFD +++VG LTT+LE D++
Sbjct: 980 IQDKGYDWVLAFVGLAASTVVGHVIEALGFAVSGERLTRRMREMAFKAILRHDIGWFDNAEHAVGVLTTSLEADAS 1055
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 5.490e-22 Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 3
Query: 6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDS 227
R TG W++GFV LAI A VGH ++ GFS +GER+ RRLRE AF AI+RHD+GWFD ++++ G LT LEED+
Sbjct: 681 RRTGHLWTLGFVFLAIAATVGHLMLAAGFSTSGERMVRRLRETAFAAIVRHDIGWFDFEEHATGVLTGRLEEDA 754
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A6H5J5U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5U8_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.520e-21 Identity = 39/77 (50.65%), Postives = 61/77 (79.22%), Query Frame = 3
Query: 6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
R G +W++GFV L + A+VG+ +S GF+VAGER+TR LR++AF+A++RHD+ WFDK+ ++VG LT+ LE +++ V
Sbjct: 646 RTIGNRWALGFVGLGLTALVGNFVLSTGFAVAGERMTRTLRKMAFEAMVRHDISWFDKESSAVGILTSRLESEASMV 722
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 2.300e-20 Identity = 38/77 (49.35%), Postives = 60/77 (77.92%), Query Frame = 3
Query: 6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
R+ G +W++GFV L + +VG+ +S GF+V+GERLTR LR +AF+A++RHD+ WFD++ ++VG LTT LE +++ V
Sbjct: 752 RKIGNRWALGFVGLGFLNLVGNMALSTGFTVSGERLTRTLRYMAFEAMVRHDIAWFDEESSAVGVLTTRLEAEASMV 828
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 4.300e-20 Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 3
Query: 3 IRETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSA 230
I + G W +GFV LA ++G+ ++ GF+ +GER+TRRLR +AFKAI+RHDVGWFD +++S LTTNLE D++
Sbjct: 824 ILDQGTSWVLGFVGLAGSTLLGNLMLTTGFATSGERMTRRLRGMAFKAIIRHDVGWFDAEEHSTAVLTTNLESDAS 899
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A024TYU1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TYU1_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 4.060e-17 Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 3
Query: 6 RETGEKWSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSAKV 236
R KWS+GF+AL + ++ T ++ FS+ ERLT R+R +AF+A+LR D+GWFD K+S G LTT L DSA +
Sbjct: 745 RNEALKWSMGFIALGVSILIALTVQNHQFSIVCERLTSRIRGMAFQAMLRQDIGWFDDPKHSSGALTTRLATDSAAI 821
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Match: A0A8K1CD49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD49_PYTOL) HSP 1 Score: 81.6 bits (200), Expect = 2.560e-16 Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 3
Query: 24 WSIGFVALAIMAIVGHTTMSYGFSVAGERLTRRLREIAFKAILRHDVGWFDKDKNSVGTLTTNLEEDSA 230
WS+GF+ L I+AI G T +Y F V +RLT R+R +AFKA+L +V WFD+D+N+ G L T L DSA
Sbjct: 53 WSVGFLVLGILAIAGMTLQNYAFGVVAQRLTSRVRLVAFKAMLHQEVSWFDQDENASGALVTRLATDSA 121 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig684.17892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig684.17892.1 >prot_F-serratus_M_contig684.17892.1 ID=prot_F-serratus_M_contig684.17892.1|Name=mRNA_F-serratus_M_contig684.17892.1|organism=Fucus serratus male|type=polypeptide|length=80bp RFAKRARSGLSASWRWLLWPSWDIQPCPTAFLSRGNGSRVAFVRSRSRPSback to top mRNA from alignment at F-serratus_M_contig684:164227..164942- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig684.17892.1 ID=mRNA_F-serratus_M_contig684.17892.1|Name=mRNA_F-serratus_M_contig684.17892.1|organism=Fucus serratus male|type=mRNA|length=716bp|location=Sequence derived from alignment at F-serratus_M_contig684:164227..164942- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig684:164227..164942- >mRNA_F-serratus_M_contig684.17892.1 ID=mRNA_F-serratus_M_contig684.17892.1|Name=mRNA_F-serratus_M_contig684.17892.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig684:164227..164942- (Fucus serratus male)back to top |