mRNA_F-serratus_M_contig6835.17883.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6835.17883.1
Unique NamemRNA_F-serratus_M_contig6835.17883.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6835.17883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6835contigF-serratus_M_contig6835:7565..9212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size214
Cds size138
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6835.17883.1prot_F-serratus_M_contig6835.17883.1Fucus serratus malepolypeptideF-serratus_M_contig6835 7639..9212 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932088.8384087-UTR-F-serratus_M_contig6835:7564..76381622932088.8384087-UTR-F-serratus_M_contig6835:7564..7638Fucus serratus maleUTRF-serratus_M_contig6835 7565..7638 +
1690964141.43368-UTR-F-serratus_M_contig6835:7564..76381690964141.43368-UTR-F-serratus_M_contig6835:7564..7638Fucus serratus maleUTRF-serratus_M_contig6835 7565..7638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932088.855924-CDS-F-serratus_M_contig6835:7638..76961622932088.855924-CDS-F-serratus_M_contig6835:7638..7696Fucus serratus maleCDSF-serratus_M_contig6835 7639..7696 +
1690964141.4476304-CDS-F-serratus_M_contig6835:7638..76961690964141.4476304-CDS-F-serratus_M_contig6835:7638..7696Fucus serratus maleCDSF-serratus_M_contig6835 7639..7696 +
1622932088.8675134-CDS-F-serratus_M_contig6835:9132..92121622932088.8675134-CDS-F-serratus_M_contig6835:9132..9212Fucus serratus maleCDSF-serratus_M_contig6835 9133..9212 +
1690964141.4598725-CDS-F-serratus_M_contig6835:9132..92121690964141.4598725-CDS-F-serratus_M_contig6835:9132..9212Fucus serratus maleCDSF-serratus_M_contig6835 9133..9212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6835.17883.1

>prot_F-serratus_M_contig6835.17883.1 ID=prot_F-serratus_M_contig6835.17883.1|Name=mRNA_F-serratus_M_contig6835.17883.1|organism=Fucus serratus male|type=polypeptide|length=46bp
MYACDWFGSVTSGTQSRKIGGGDGDRAPLSTPAGDMDKCDFQELAD
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mRNA from alignment at F-serratus_M_contig6835:7565..9212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6835.17883.1 ID=mRNA_F-serratus_M_contig6835.17883.1|Name=mRNA_F-serratus_M_contig6835.17883.1|organism=Fucus serratus male|type=mRNA|length=1648bp|location=Sequence derived from alignment at F-serratus_M_contig6835:7565..9212+ (Fucus serratus male)
TCGTCTCCCTGCACTCCGATGCTTCACTTCATCGGATGGAACATGATGGA
GTGTCGCAGCGCTCGTAGAAGAGCATGTACGCCTGTGATTGGTTTGGCAG
CGTCACAAGCGGCACGCAGTCCCGGAAAATAGGCGAGTCGTTTTAGTACA
CAAATACCATTGCAGCTAACGCAAAACCCGCGTTTGCAATTCGCAAACGT
AATTGGCTATCGTACATACAGCCCACGTTTGCCACAGCACGCACATAAGT
TGAGACGCTTGACGGATTTCTCTAGCTAAGTCAGGTGGGCAGCATGCAGG
CAATATTCCTCGTGTCAGTCGTACTGTCGAGGATACTCTCAATAGGCCAT
TAGACTAGGCCCAGAGCATTCACAGTTCCTCCAAGCTATATATCGACAGA
TGCTAAGCGCCGTACGCACCTCACAGTTCTTGACCTCCTGAAGTGTAGCG
GGCCGGACTGTGGCATCGCTGGCATATTTCCAGCCGTCCTTGTCTTGCAC
GTAGGCGACGTAGTGCCCCCCAAGAGAGCTGCCGCGGTGTTGCACCAGAC
CGAAGAGGCGGTAACGGGTTTCCTCCGGGGAAAGCGGTGCCTGTGAAACA
TCGCCACGAGTAGATACGAAATACGTTGGATGCGCGACAAGAGCACTGGG
TGACTTTTGAACCCATGTGAAAAAGTGTACATGGCTTCAGTAAAGTTAGC
GCTTGAAGAGCAGCGCAAGCGCGATTAGCTCTGACGTACGGTAATCGTAA
AGCGCCATATACGGAACACCGAGAACACCGCTCCAAAACAGATGAGGATT
CTGCGCTCAGAAACGTTAACGACTAGTGAAAAATCAGTAAGGCGTTTCTC
TAGCACTTGCCCCGCCCCTGAACCACCCAAGTACTCTGTGTAAGAACAAC
TCAAGCCAAAACAAAGAGACCGTATGCTTTTTCTCGCCACGGAGCAGAAT
ACACACACACACCGAAAATTCGCTTCATCTTTTTGCCCTCGCACCTGAGA
GTCCTGCCAGAAATACGGCGACATATCTAGGTCAAGATCAAATTCGACTC
TTCGGCAGGTCTTTCTTGTGGCCTGGAGCCGCTGCAGGTGGCACACCAGA
ACACCGGGGGAGTCCCGAGCATGAGGAGGCGTTTGCGAGCGTCCTGCCTT
GACTTCCCACCGCCCTCGTCTTTCATGCCTTGGCTGCTCACCCTTCGCGT
GCAGCACGCCTGACAGTTGAAGCCATTGCCATCCGCCGCGACCAGCGCTT
CTTCGGCCATAAAATGGTCCAGGCAATCATACATGCTGACTGCCAGCGAG
TCGCGCCCCTCCACCTTCGTGGCCCGCGCCAGCGGCTCCACCAATCGATT
CAGGGGATTTTTGGGGCAGGCGAACGTGTCGAAGGTAGTGAGGGGGACAT
CGGAAACATCTGCGGCGGATTCACCCTCTTCATCTTCGCTCTTCATGCTC
TCGTCTGTTTCGCTCTCCACGAGGACGGCGTCGCTGCTATTCGATCCCTT
TCGTCCCAGCGTCCCTTCAGGATCCATAATATTAACGCCTCCAAACTGCG
CTGTCGCTTGGTCCCCAGGTGGAGGTGACGGCGACCGCGCGCCATTGTCC
ACACCTGCAGGAGACATGGATAAGTGCGACTTCCAAGAGCTTGCCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6835:7565..9212+

>mRNA_F-serratus_M_contig6835.17883.1 ID=mRNA_F-serratus_M_contig6835.17883.1|Name=mRNA_F-serratus_M_contig6835.17883.1|organism=Fucus serratus male|type=CDS|length=276bp|location=Sequence derived from alignment at F-serratus_M_contig6835:7565..9212+ (Fucus serratus male)
ATGTACGCCTGTGATTGGTTTGGCAGCGTCACAAGCGGCACGCAGTCCCG
GAAAATAGATGTACGCCTGTGATTGGTTTGGCAGCGTCACAAGCGGCACG
CAGTCCCGGAAAATAGGTGGAGGTGACGGCGACCGCGCGCCATTGTCCAC
ACCTGCAGGAGACATGGATAAGTGCGACTTCCAAGAGCTTGCCGACGTGG
AGGTGACGGCGACCGCGCGCCATTGTCCACACCTGCAGGAGACATGGATA
AGTGCGACTTCCAAGAGCTTGCCGAC
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