mRNA_F-serratus_M_contig6822.17881.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6822.17881.1
Unique NamemRNA_F-serratus_M_contig6822.17881.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: A0A6H5JIN2_9PHAE (Transket_pyr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIN2_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 3.120e-103
Identity = 151/183 (82.51%), Postives = 164/183 (89.62%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            +FGED+AFGGVFRCT GL++QFGPDRVF++ + EQGIAGF IGYASMGKTAIAEIQ           +VNEAAKFRYRSG+QFNCGGLT+RAPCGAVGHGGHYHSQSPE+Y AHTPGLKVVMPRNA EAKGLLLA +REPDPVIF EPKILYRTSVEDVPDGDYEVPLG+ADVMREGTDVTLV
Sbjct:  155 VFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKVVMPRNATEAKGLLLASVREPDPVIFFEPKILYRTSVEDVPDGDYEVPLGVADVMREGTDVTLV 337
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: A0A835ZJS3_9STRA (Thiamine diphosphate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJS3_9STRA)

HSP 1 Score: 294 bits (752), Expect = 3.500e-97
Identity = 141/183 (77.05%), Postives = 160/183 (87.43%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            +FGED+AFGGVFRC+ GL+++FG  RVFNTP++EQGIAGF IGYA+MG TAIAE+Q           LVNEAAK+RYRSG++FNCGGLT+RAPCGAVGHGGHYHSQSPEAY AHTPGLKVVMPR+A EAKGLLLA IR+PDPVIFLEPK LYRTSVEDVPDGDYEVPLG+A V+R G DVT+V
Sbjct:   63 VFGEDVAFGGVFRCSVGLKEEFGASRVFNTPLSEQGIAGFAIGYAAMGGTAIAEMQFADYIFPAMDQLVNEAAKYRYRSGNEFNCGGLTIRAPCGAVGHGGHYHSQSPEAYFAHTPGLKVVMPRDAREAKGLLLASIRDPDPVIFLEPKALYRTSVEDVPDGDYEVPLGVAQVLRAGADVTVV 245
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: A0A7S1XVL4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVL4_9STRA)

HSP 1 Score: 280 bits (717), Expect = 8.490e-92
Identity = 132/183 (72.13%), Postives = 156/183 (85.25%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            +FGED+AFGGVFRC+ GLR++FGP+RVFNTP+ EQGIAGF IGYA+MG+TA+AE+Q           +VNEAAK+RYRSG QFNCG LT RAPCGAVGHGGHYHSQSPEAY A TPGLK+VMPR+  EAKGLLLA IR+P+PV+F EPKILYR +VEDVP GDYE+PLG+AD++R GT VT+V
Sbjct:   69 VFGEDVAFGGVFRCSVGLREEFGPERVFNTPLCEQGIAGFAIGYAAMGRTAVAEMQFADYIFPAFDQIVNEAAKYRYRSGAQFNCGSLTFRAPCGAVGHGGHYHSQSPEAYFAGTPGLKIVMPRSPREAKGLLLASIRDPNPVVFFEPKILYRAAVEDVPVGDYEIPLGVADIVRPGTHVTVV 251
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: A0A7S1C9I4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9I4_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.140e-91
Identity = 133/183 (72.68%), Postives = 154/183 (84.15%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            LFGED+AFGGVFRC+  LR++FG DRVFNTP+ EQGIAGF IGYA+MG+TAIAE+Q           +VNEAAK+RYRSGDQ++CG LT+RAP GAVGHGGHYHSQSPEAY AHTPGLKVV  R+  +AKGLLL+CIR+PDP +F EPK LYR SVEDVP GDY +PLG+ADVMREGTD+TLV
Sbjct:   46 LFGEDVAFGGVFRCSVDLREEFGEDRVFNTPLCEQGIAGFAIGYAAMGRTAIAEMQFADYIFPAFDQIVNEAAKYRYRSGDQYDCGPLTIRAPYGAVGHGGHYHSQSPEAYFAHTPGLKVVFCRSPKDAKGLLLSCIRDPDPCLFFEPKALYRASVEDVPTGDYTIPLGVADVMREGTDITLV 228
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: A0A2R5GAR1_9STRA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAR1_9STRA)

HSP 1 Score: 274 bits (700), Expect = 7.570e-90
Identity = 132/183 (72.13%), Postives = 153/183 (83.61%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            LFGED+AFGGVFRC+ GLRD+FG +RVFNTP+ EQGIAGFGIGYAS G+TAIAE+Q           LVNEAAK RYRSG+QFNCGGLTVRAP GA+GHGGHYHSQSPEAY  HTPGLKVV+PR+  +AKGLLL+CIR+P+P IF EPK LYR SV DVP GDY +PLG A++++ GTDVT+V
Sbjct:   23 LFGEDVAFGGVFRCSMGLRDEFGKNRVFNTPLCEQGIAGFGIGYASTGRTAIAEVQFADYIFPAFDQLVNEAAKMRYRSGNQFNCGGLTVRAPYGAIGHGGHYHSQSPEAYFTHTPGLKVVIPRDPIQAKGLLLSCIRDPNPCIFFEPKALYRGSVGDVPVGDYTIPLGKAEIVQPGTDVTVV 205
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: A0A812TXL3_9DINO (BkdB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TXL3_9DINO)

HSP 1 Score: 273 bits (698), Expect = 5.490e-89
Identity = 125/183 (68.31%), Postives = 157/183 (85.79%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            +FGED+AFGGVFRC+  L+++FGP+RVFNTP+ EQGIAGF IGYA+MG+TAIAE+Q           +VNEAAK+RYRSGD+FNCGGLT R+P GAVGHGGHYHSQSPEAY AHTPGLKVV+PR+ A AKGLLLAC+R+P+P +F EPK LYR +VE+VP+GDY +PLG+A+V+++G D+T+V
Sbjct:   64 VFGEDVAFGGVFRCSVDLKEEFGPERVFNTPLCEQGIAGFAIGYAAMGRTAIAEMQFADYIFPAFDQIVNEAAKYRYRSGDEFNCGGLTFRSPYGAVGHGGHYHSQSPEAYFAHTPGLKVVVPRSPAAAKGLLLACVRDPNPCLFFEPKALYRAAVEEVPEGDYTLPLGVAEVVQKGADITVV 246
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: A0A7S2UTI8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTI8_9STRA)

HSP 1 Score: 272 bits (695), Expect = 9.520e-89
Identity = 132/183 (72.13%), Postives = 153/183 (83.61%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            +FGED+AFGGVFRC+ GL++QFG  RVFNTP++EQG+AGFGIGYA+MG T IAEIQ           LVNEAAK+RYRSG QF+CGGLTVRAPC AVGHG  YHSQSPE+Y AHTPGLKVV+PR  AEAKGLLL  IR+PDPVIF EPKILYRT+VE+VP+ D+E+ LG ADV+R GTD+TLV
Sbjct:   48 VFGEDVAFGGVFRCSIGLKEQFGAHRVFNTPLSEQGVAGFGIGYAAMGGTCIAEIQFADYIFPAFDQLVNEAAKYRYRSGGQFDCGGLTVRAPCAAVGHGALYHSQSPESYFAHTPGLKVVVPRGPAEAKGLLLKSIRDPDPVIFFEPKILYRTAVEEVPEADFEIELGKADVIRPGTDITLV 230
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: A0A7R9TFB0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TFB0_9VIRI)

HSP 1 Score: 271 bits (694), Expect = 2.080e-88
Identity = 135/183 (73.77%), Postives = 151/183 (82.51%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            +FGED+AFGGVFRCTAGL +++G DRVFNTP+ EQGIAGFG+G A+ G TAIAEIQ           LVNEAAK+RYRSG QF+CGGLTVRAPCGAVGHGGHYHSQSPEAY AHTPGL VVMPR   EAKGLLL+ IR  DPVIFLEPK LYRT+V++VP  DYE+PLG ADV+R G DVTLV
Sbjct:   62 VFGEDVAFGGVFRCTAGLGEKYGSDRVFNTPLCEQGIAGFGVGLAAQGHTAIAEIQFADYIFPAFDQLVNEAAKYRYRSGGQFDCGGLTVRAPCGAVGHGGHYHSQSPEAYFAHTPGLVVVMPRGPREAKGLLLSSIRSRDPVIFLEPKALYRTAVDEVPAEDYELPLGQADVVRSGGDVTLV 244
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: A0A1V9YPY9_9STRA (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPY9_9STRA)

HSP 1 Score: 270 bits (689), Expect = 7.970e-88
Identity = 129/183 (70.49%), Postives = 153/183 (83.61%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            +FGED+AFGGVFRCT  L+++FG DRVFN+P+ EQGIAGF IGYAS+G+TAIAEIQ           +VNEAAKFRYRSG+QF+CG LT RAP GAVGHG HYHSQSPEAY AHTPGLKVV+PRN  +AKGLLLA IR+P+PV+F EPK LYR SV DVP GD+E+PLG+AD++R GTDVT++
Sbjct:   50 IFGEDVAFGGVFRCTVDLKEKFGEDRVFNSPLCEQGIAGFAIGYASIGRTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFDCGKLTFRAPYGAVGHGAHYHSQSPEAYFAHTPGLKVVIPRNPTQAKGLLLASIRDPNPVVFFEPKALYRASVSDVPVGDFELPLGVADIVRPGTDVTVL 232
[Close]
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Match: D8TKH8_VOLCA (Transket_pyr domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=D8TKH8_VOLCA)

HSP 1 Score: 269 bits (687), Expect = 1.330e-87
Identity = 131/183 (71.58%), Postives = 151/183 (82.51%), Query Frame = 1 
Query:    1 LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKTAIAEIQ-----------LVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYLAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPDGDYEVPLGIADVMREGTDVTLV 516
            +FGED++FGGVFRCT GL ++FG DRVFNTP++EQGI GFGIG A+MG TA+AEIQ           LVNEAAK+RYRSG  FNCGGLTVRAP GAVGHGGHYHSQSPEA   H PGLKVV+P + AEAKGLLL+ IR PDPV+F EPK++YRT+VEDVP+GDYEVPLG+A V+ EG DVTLV
Sbjct:   43 VFGEDVSFGGVFRCTVGLLERFGKDRVFNTPLSEQGIVGFGIGLAAMGHTAVAEIQFADYIFPAFDQLVNEAAKYRYRSGGTFNCGGLTVRAPYGAVGHGGHYHSQSPEAVFTHVPGLKVVIPSSPAEAKGLLLSSIRAPDPVVFFEPKMMYRTAVEDVPEGDYEVPLGVARVVVEGGDVTLV 225
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6822.17881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN2_9PHAE3.120e-10382.51Transket_pyr domain-containing protein n=2 Tax=Ect... [more]
A0A835ZJS3_9STRA3.500e-9777.05Thiamine diphosphate-binding protein n=1 Tax=Tribo... [more]
A0A7S1XVL4_9STRA8.490e-9272.13Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1C9I4_9STRA1.140e-9172.68Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2R5GAR1_9STRA7.570e-9072.13Pyruvate dehydrogenase E1 component subunit beta, ... [more]
A0A812TXL3_9DINO5.490e-8968.31BkdB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S2UTI8_9STRA9.520e-8972.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9TFB0_9VIRI2.080e-8873.77Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A1V9YPY9_9STRA7.970e-8870.492-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
D8TKH8_VOLCA1.330e-8771.58Transket_pyr domain-containing protein n=3 Tax=Vol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6822contigF-serratus_M_contig6822:5727..7619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.8
Seed ortholog evalue3.2e-84
Seed eggNOG ortholog2880.D7FZ95
Preferred nameBCKDHB
KEGG rclassRC00027,RC00029,RC00117,RC00627,RC02743,RC02883,RC02949,RC02953
KEGG koko:K00059,ko:K00167
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07599,R07600,R07601,R07602,R07603,R07604,R07759,R07763,R10116,R10120,R10996,R10997,R11671
KEGG Pathwayko00061,ko00280,ko00333,ko00640,ko00780,ko01040,ko01100,ko01110,ko01130,ko01212,map00061,map00280,map00333,map00640,map00780,map01040,map01100,map01110,map01130,map01212
KEGG ModuleM00036,M00083,M00572
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003826,GO:0003863,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005947,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006520,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009081,GO:0009083,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009642,GO:0009646,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010565,GO:0014070,GO:0014074,GO:0016020,GO:0016054,GO:0016491,GO:0016624,GO:0016903,GO:0017086,GO:0018130,GO:0019216,GO:0019217,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0030062,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034285,GO:0034641,GO:0034654,GO:0035337,GO:0035383,GO:0035384,GO:0042221,GO:0042304,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043617,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045239,GO:0045240,GO:0045723,GO:0045834,GO:0045923,GO:0046390,GO:0046395,GO:0046483,GO:0046683,GO:0046889,GO:0046890,GO:0046949,GO:0048518,GO:0048522,GO:0048545,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051384,GO:0051591,GO:0051716,GO:0055086,GO:0055114,GO:0061062,GO:0061063,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071496,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0098798,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1990204,GO:2000026
EggNOG free text desc.3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
EggNOG OGsCOG0022@1,KOG0525@2759
EC1.1.1.100,1.2.4.4
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01004
Exons3
Model size516
Cds size516
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6822.17881.1prot_F-serratus_M_contig6822.17881.1Fucus serratus malepolypeptideF-serratus_M_contig6822 5727..7619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932088.5570896-CDS-F-serratus_M_contig6822:5726..59181622932088.5570896-CDS-F-serratus_M_contig6822:5726..5918Fucus serratus maleCDSF-serratus_M_contig6822 5727..5918 -
1690964141.3146148-CDS-F-serratus_M_contig6822:5726..59181690964141.3146148-CDS-F-serratus_M_contig6822:5726..5918Fucus serratus maleCDSF-serratus_M_contig6822 5727..5918 -
1622932088.6094906-CDS-F-serratus_M_contig6822:6481..66371622932088.6094906-CDS-F-serratus_M_contig6822:6481..6637Fucus serratus maleCDSF-serratus_M_contig6822 6482..6637 -
1690964141.332028-CDS-F-serratus_M_contig6822:6481..66371690964141.332028-CDS-F-serratus_M_contig6822:6481..6637Fucus serratus maleCDSF-serratus_M_contig6822 6482..6637 -
1622932088.6257079-CDS-F-serratus_M_contig6822:7451..76191622932088.6257079-CDS-F-serratus_M_contig6822:7451..7619Fucus serratus maleCDSF-serratus_M_contig6822 7452..7619 -
1690964141.344931-CDS-F-serratus_M_contig6822:7451..76191690964141.344931-CDS-F-serratus_M_contig6822:7451..7619Fucus serratus maleCDSF-serratus_M_contig6822 7452..7619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6822.17881.1

>prot_F-serratus_M_contig6822.17881.1 ID=prot_F-serratus_M_contig6822.17881.1|Name=mRNA_F-serratus_M_contig6822.17881.1|organism=Fucus serratus male|type=polypeptide|length=172bp
LFGEDIAFGGVFRCTAGLRDQFGPDRVFNTPITEQGIAGFGIGYASMGKT
AIAEIQLVNEAAKFRYRSGDQFNCGGLTVRAPCGAVGHGGHYHSQSPEAY
LAHTPGLKVVMPRNAAEAKGLLLACIREPDPVIFLEPKILYRTSVEDVPD
GDYEVPLGIADVMREGTDVTLV
back to top

mRNA from alignment at F-serratus_M_contig6822:5727..7619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6822.17881.1 ID=mRNA_F-serratus_M_contig6822.17881.1|Name=mRNA_F-serratus_M_contig6822.17881.1|organism=Fucus serratus male|type=mRNA|length=1893bp|location=Sequence derived from alignment at F-serratus_M_contig6822:5727..7619- (Fucus serratus male)
CTGTTCGGGGAGGACATCGCATTCGGAGGCGTTTTTCGGTGCACTGCCGG
CCTGAGGGATCAGTTCGGACCCGACCGCGTCTTCAACACCCCCATCACGG
AGCAAGGAATCGCCGGTTTCGGCATCGGCTACGCCTCAATGGGCAAGACC
GCTATCGCAGAGATTCAGGTGGTCCGTCCCGAAAACTTGTTTTTTTGCTT
GCTTCGACGCTGATGCTCTCTCCGAGTCTTATGTGACTTATTTCGGGAGA
ATAATGTGATCAACGTGACTCTTGTCACCCTTCTACAGTACCTGGTATTA
GTTTTGACGGGTGGTGTGAGCACGCTGTGCAGGCGTTTGGTTCTCGGCAT
TCATGTGATGCGCGCTGTATCATTCGGCCCGCTTTTGCACTCAAGACGCG
AGTAAAGTTGGTTTTCCAAGACCGACTTCTCTAATCAGCGCCGTGCTGCG
GTGTGTGTTTTCGTTAAGCGATGAATGGACGGTACGATATGGCTGTGCAT
TACCCCCCCTGGTATGATGCGCACTCGACTCACGACACGGTTAAACTACC
CACCCCCTCTGTCTCACATCCATGGGTGCCCACGCGGGGCTTCAGTTCGC
CGACTACATCTATCCGGCGTTCGACCAGGTGAGATCAGTCACAGTGCACC
TTTTCATGCGTCGAGGGGAATAGATAGACCGTGGGGGGTGGGGAGGGTGG
GGGCTGATCAAGCCGCTACGTGTCATGAGCCTTACTTCGGTTAACGCTAC
TGGATGGGCGCGTCCCGATACCCAGATTTTGAAGGTTTCTCTGCTGCAGG
TAGATGGATCGAATCTGGCGCGGACGACCAATCTTTGCCAAACCGTCGAG
GACGATGGTCTGGTACACAAAGCACTGTCAAGGTGGACAGTCGAAAGAAG
AGCATCGCCCCCTCGCCCCCCTGCCTCCCATCCCGCCCTTGTTTTGGCCA
ATCTCGTGGTGTTATGGTTGCTTGCTGCCCAGCTCGTCAACGAGGCGGCC
AAGTTCAGATACCGTTCCGGAGATCAGTTCAACTGCGGCGGGCTCACTGT
GAGGGCACCGTGCGGCGCTGTGGGCCACGGAGGCCATTACCACTCCCAGT
CGCCCGAGGCGTACTTGGCGCACACTCCGGGCCTCAAGGTATCTTGGATG
TCACTCCCGAGCATGATGTGTATGGAAATGTTTGCTTGTGTAGTACGCGG
TGATTACCTCTTAACCTTTTCTTCGGCAACCTCTACTGGTACACCACTCT
AGGTCACCTCGATCATTGACCTCCTCTCTTCTCCCTTTTTTACTGGGCGT
TGGTGTTCCAGCAGTCGCCAGTTTTGACCAAAACAAACTGAGCTACAATG
TTACAGCCAGATGCATAGACCAAGACGCCCCGAGCGTTCCCGTTTATACA
TTACACATAAGGACTTACCCTGTGTCCTTTTTCGTTTGTATATATACATA
TATACATTGTTAATCATTTGAGCAAATACCCAAATCATATACTTTGTACA
GTAACTGAATTAAGTACTTTGTACAGTAACTGAATATCATTAACGAATAT
TACTGCGTTACGACGCGGTCGAGCTCTCTGCCAATCATACTTTACGTTAT
ATGGCACGGGTTTTGGGCTGCACACGACCTAATGACGTATTCGTACGTTA
AAATCTGTAAAAGTGATGCGACGATAATTTAATATTCTTGCTGCGCCGAA
GGTAGTGATGCCCAGGAACGCGGCTGAGGCAAAAGGCTTGCTGCTCGCGT
GCATCCGAGAGCCCGATCCGGTGATCTTCCTCGAGCCCAAGATTCTCTAC
CGTACTAGCGTGGAGGACGTACCCGACGGCGATTACGAGGTGCCCCTGGG
AATCGCTGACGTGATGCGCGAGGGAACGGACGTTACCCTGGTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6822:5727..7619-

>mRNA_F-serratus_M_contig6822.17881.1 ID=mRNA_F-serratus_M_contig6822.17881.1|Name=mRNA_F-serratus_M_contig6822.17881.1|organism=Fucus serratus male|type=CDS|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig6822:5727..7619- (Fucus serratus male)
CTGTTCGGGGAGGACATCGCATTCGGAGGCGTTTTTCGGTGCACTGCCGG
CCTGAGGGATCAGTTCGGACCCGACCGCGTCTTCAACACCCCCATCACGG
AGCAAGGAATCGCCGGTTTCGGCATCGGCTACGCCTCAATGGGCAAGACC
GCTATCGCAGAGATTCAGCTGTTCGGGGAGGACATCGCATTCGGAGGCGT
TTTTCGGTGCACTGCCGGCCTGAGGGATCAGTTCGGACCCGACCGCGTCT
TCAACACCCCCATCACGGAGCAAGGAATCGCCGGTTTCGGCATCGGCTAC
GCCTCAATGGGCAAGACCGCTATCGCAGAGATTCAGCTCGTCAACGAGGC
GGCCAAGTTCAGATACCGTTCCGGAGATCAGTTCAACTGCGGCGGGCTCA
CTGTGAGGGCACCGTGCGGCGCTGTGGGCCACGGAGGCCATTACCACTCC
CAGTCGCCCGAGGCGTACTTGGCGCACACTCCGGGCCTCAAGCTCGTCAA
CGAGGCGGCCAAGTTCAGATACCGTTCCGGAGATCAGTTCAACTGCGGCG
GGCTCACTGTGAGGGCACCGTGCGGCGCTGTGGGCCACGGAGGCCATTAC
CACTCCCAGTCGCCCGAGGCGTACTTGGCGCACACTCCGGGCCTCAAGGT
AGTGATGCCCAGGAACGCGGCTGAGGCAAAAGGCTTGCTGCTCGCGTGCA
TCCGAGAGCCCGATCCGGTGATCTTCCTCGAGCCCAAGATTCTCTACCGT
ACTAGCGTGGAGGACGTACCCGACGGCGATTACGAGGTGCCCCTGGGAAT
CGCTGACGTGATGCGCGAGGGAACGGACGTTACCCTGGTGGTAGTGATGC
CCAGGAACGCGGCTGAGGCAAAAGGCTTGCTGCTCGCGTGCATCCGAGAG
CCCGATCCGGTGATCTTCCTCGAGCCCAAGATTCTCTACCGTACTAGCGT
GGAGGACGTACCCGACGGCGATTACGAGGTGCCCCTGGGAATCGCTGACG
TGATGCGCGAGGGAACGGACGTTACCCTGGTG
back to top