mRNA_F-serratus_M_contig1236.1788.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1236.1788.1
Unique NamemRNA_F-serratus_M_contig1236.1788.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1236.1788.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 4.450e-27
Identity = 65/155 (41.94%), Postives = 93/155 (60.00%), Query Frame = 3 
Query:   51 ESVANSLLDIFV----SRKETKYNAMYVSLYYKLLFKIAARHPPFLDRLRNSNSLHWCLESFLLRGHCPTLEMATTLISIVELCLHRYGLPFAMEAITWVIGSPAITPSLKVTRHDTNVQVPLYALWMLEVCLRH-----QLGNEGMGAVELFIR 488
            E++   L   FV     +   +YNA Y S+YY LL K    +P FL+ +++++SL W +E FLLRG+ P+ +MATTL+SI  LCL +YG  +A  A++W +G  A    LKV     N ++PLYALWM+E C+R        G EG  A+E FI+
Sbjct: 3466 ETIVQGLTMFFVLWHDKKASIEYNATYSSMYYDLLLKGCLLYPSFLEAVKSASSLIWSMEWFLLRGYAPSFKMATTLMSIFTLCLRKYGAGYASHALSWTLGPHAKEVYLKVG-DGPNPRLPLYALWMIEACVRRPQSGWDSGPEG-DAMETFIK 3618
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BLAST of mRNA_F-serratus_M_contig1236.1788.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.110e-26
Identity = 64/155 (41.29%), Postives = 93/155 (60.00%), Query Frame = 3 
Query:   51 ESVANSLLDIFV----SRKETKYNAMYVSLYYKLLFKIAARHPPFLDRLRNSNSLHWCLESFLLRGHCPTLEMATTLISIVELCLHRYGLPFAMEAITWVIGSPAITPSLKVTRHDTNVQVPLYALWMLEVCLRH-----QLGNEGMGAVELFIR 488
            E++   L   FV     +   +YNA Y S+YY LL K    +P FL+ +++++SL W +E FLLRG+ P+ +MATTL+SI  LCL +YG  ++  A++W +G  A    LKV     N ++PLYALWM+E C+R        G EG  A+E FI+
Sbjct: 1909 ETIVQGLTMFFVLWHDKKASIEYNATYSSMYYDLLLKGCLLYPSFLEAVKSASSLIWSMEWFLLRGYAPSFKMATTLMSIFTLCLRKYGAGYSSHALSWTLGPHAKEVYLKVG-DGPNPRLPLYALWMIEACVRRPQSGWDSGPEG-DAMETFIK 2061
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1236.1788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK75_ECTSI4.450e-2741.94Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KF55_9PHAE1.110e-2641.29USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1236contigF-serratus_M_contig1236:43185..46162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue5e-21
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons4
Model size510
Cds size396
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1236.1788.1prot_F-serratus_M_contig1236.1788.1Fucus serratus malepolypeptideF-serratus_M_contig1236 44802..46162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.0895746-UTR-F-serratus_M_contig1236:43184..432341622929156.0895746-UTR-F-serratus_M_contig1236:43184..43234Fucus serratus maleUTRF-serratus_M_contig1236 43185..43234 +
1690962727.349639-UTR-F-serratus_M_contig1236:43184..432341690962727.349639-UTR-F-serratus_M_contig1236:43184..43234Fucus serratus maleUTRF-serratus_M_contig1236 43185..43234 +
1622929156.1035705-UTR-F-serratus_M_contig1236:44738..448011622929156.1035705-UTR-F-serratus_M_contig1236:44738..44801Fucus serratus maleUTRF-serratus_M_contig1236 44739..44801 +
1690962727.360469-UTR-F-serratus_M_contig1236:44738..448011690962727.360469-UTR-F-serratus_M_contig1236:44738..44801Fucus serratus maleUTRF-serratus_M_contig1236 44739..44801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.1194263-CDS-F-serratus_M_contig1236:44801..448961622929156.1194263-CDS-F-serratus_M_contig1236:44801..44896Fucus serratus maleCDSF-serratus_M_contig1236 44802..44896 +
1690962727.3690243-CDS-F-serratus_M_contig1236:44801..448961690962727.3690243-CDS-F-serratus_M_contig1236:44801..44896Fucus serratus maleCDSF-serratus_M_contig1236 44802..44896 +
1622929156.1341822-CDS-F-serratus_M_contig1236:45496..456591622929156.1341822-CDS-F-serratus_M_contig1236:45496..45659Fucus serratus maleCDSF-serratus_M_contig1236 45497..45659 +
1690962727.3781595-CDS-F-serratus_M_contig1236:45496..456591690962727.3781595-CDS-F-serratus_M_contig1236:45496..45659Fucus serratus maleCDSF-serratus_M_contig1236 45497..45659 +
1622929156.150729-CDS-F-serratus_M_contig1236:46024..461621622929156.150729-CDS-F-serratus_M_contig1236:46024..46162Fucus serratus maleCDSF-serratus_M_contig1236 46025..46162 +
1690962727.3859174-CDS-F-serratus_M_contig1236:46024..461621690962727.3859174-CDS-F-serratus_M_contig1236:46024..46162Fucus serratus maleCDSF-serratus_M_contig1236 46025..46162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1236.1788.1

>prot_F-serratus_M_contig1236.1788.1 ID=prot_F-serratus_M_contig1236.1788.1|Name=mRNA_F-serratus_M_contig1236.1788.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MYVSLYYKLLFKIAARHPPFLDRLRNSNSLHWCLESFLLRGHCPTLEMAT
TLISIVELCLHRYGLPFAMEAITWVIGSPAITPSLKVTRHDTNVQVPLYA
LWMLEVCLRHQLGNEGMGAVELFIRTERSLDQ
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mRNA from alignment at F-serratus_M_contig1236:43185..46162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1236.1788.1 ID=mRNA_F-serratus_M_contig1236.1788.1|Name=mRNA_F-serratus_M_contig1236.1788.1|organism=Fucus serratus male|type=mRNA|length=2978bp|location=Sequence derived from alignment at F-serratus_M_contig1236:43185..46162+ (Fucus serratus male)
CTGGAAAGGACCCTGCCCCTGTTCCTTGAAAACTTATTCGACCTAGATAG
GTGAGGCACCTGTTCCCCATTTCCTCCAGACGTACCATTTGTGGAGTTAC
TAAACATCTTGAGAAAGCCCAGGGTTTCCTCTGACAAGAAAATACTATTA
TAGAGTGGGATATAAAAGAAATACTAGAGTAGGATATGCTTGTGTTCGCT
TACCCCCCACTCCGACAAATGCTCGCTGGGTATATATAGTATAGATGATA
CAGTATACAGTATAATGCATGTACGTATCTATACAAACCACTTATTTTAT
CCAGAAAACGTTGTTCCAGCGGTGCGACGATCATAGCATATCATAGTATT
GTATAGTATAGTACAGTATAGCAATAGCATAGTATAGTATAGTATAGCGT
AGCATAGTGCCTGGTATAGTATAGTATAGCATAGCATAGCATAGCATAGC
ATAGCACAGCATAGTGTAGTATAGTATAGTAAAGGGTACAGTACTACAGT
AGCTCGAGTGCCTTTTAATAATATAAAAAAAAACATGGTTAGTCTAGACG
TCAGCAGTGACTAGTAATATTAAATAGTATTATACTTTGTGATTAATAAT
TGCACAAGATTGAAGTATACTGGTACACATTACTACTGTGGGGGTTTTTA
TTTGTAGCAAGATTAGAAAAAAATCGTTACTGCTGTAACAGTACTAGACT
TTGTTTTGTATTGATGATACCACCCATTTCAGTCTGAAGCAACCGGAAGA
TTACGTCAAGGGGATGATGCTCAAGTTCATCCATGCCGTCATCGAGAAGC
ACCCAGACTTGTGCGAGCTTCTGCAGCAGGTGGCGGAATCACAGGAGAAG
AAACAAAGCACTGtttTTTTTTGGTTTGCAGCTTTTTATTTTTTATTTTT
TGGTACAATTTGTCTTTAAAGCTCGCTCCAACCGTTTATATTCCAGCAAG
TTCGTTTGCTTGCTATGAAATATTACCTTTAAGTGCGAAATTGTTGTTTC
CGCTCATTTTGCTTTTTACCTTGTTTTTTGGATCGCTTTTATTTTGCATT
TTTTTTTTAATTGTTTTTATTTTCTCTCATTTTACTTTTTTCATGTTATT
TAAACCGCTTTGTCTTCCCCTCATTTTGCTTTTTGCATGTTTTTTACAtc
gtttttccccgcTCATTTTGCTTGTTGTCTTGtttttGTATgTTGTTGTT
TCTTcCCCTCATTTTGCTTGTTGTCGCATCGTTTTTACCCCCTCATTTTG
CGCTTCGTCTTCGTTTGGCTTTTTCCCCCTCATTGTTTCTTGTAATTCTT
TTTCCCCCTCATTTTACTTCTTGTCTTGTTTTTGTTGTCATTTTTTTTCT
TTCCCTCGTTTTCTTTTTTCTTTTCTTGTCATTTGTATACTTCGGTACAT
ATATTTCCCCTAATTTTGCCTTTTGTCTTGTTTTTTGTATCCTTGTTTCC
CCCTCATTTTGATTGCTGTATTGTTTCTTGTAATTATTTTTCCCCCTCAT
TTTACCCTTTGTCGTGTTTTTTGCATCGTTTATTTTTCATTCCTCTTCCT
TCAGGAGAGCGTGGCGAACTCGTTGTTGGACATTTTTGTTTCTCGGAAAG
AAACAAAGTACAATGCAATGTATGTCTCACTCTACTACAAACTCCTCTTC
AAGATAGCGGCGCGGCACCCTCCATTCCTTGATCGCCTGAGGAATTCCAA
CAGCCTGCACTGGTGAGATTTCCTATACCATTAGACTCTAGGGTGGGAGA
TAGAGAAAAACCCCACAAAGAGTTTGGTATTGGTTGCAGTATTCTTTTCT
TTCTTTTCTTCAATATTACTTATAGCCGATATACCTCGTTGCCATCCTTC
TTGTGGTCACTAAGAATCTTCCCATCCCTCCCCGGTTCACGCCTTACATT
TTTTTTATCGCGATGCAAGTTCAGCAATCTTACAACTCGTCAGCTAATGG
TTAAATTTTACTTACTTACGTTCCCACGCTTTTCGTTACGAAAGAAAGAA
CACAAATCCTAGTTTGGTAAGAACACAAATCCTACTATTGTAGACCACTC
GGGCGACGAGCTATGGAATTATATCATATCATATCATACTCCATCAAACA
ACGCGGCGATGTGTTTTTTTGCCAAAGGAGCTATGCATGGTCACGCATAT
AGCAAGAGTATGGGCCAATCGTGTAAGTTTGCCAATCCTGCTCGTGGTCA
TCTGATGTCGTTCAAAGCTTGGAGCGATGCGATGCGGTATTGATGTTGTA
TTATGCGGTATTGGTATGACCCTTGCGCCTCTCTGTAACTCTCGAATATG
GCAATATGGCAGGTGCCTCGAGTCTTTTCTCTTGAGGGGCCACTGTCCCA
CCTTGGAGATGGCCACCACTCTTATCTCTATCGTGGAGCTATGCCTGCAC
CGGTACGGTTTGCCGTTCGCGATGGAAGCCATAACCTGGGTCATCGGGTC
GCCGGCCATCACTCCCTCCCTCAAGGTTTGTTGTTTTTTTCTGGTGTCCG
CGTGCAAATATCTCGCGTGGCCTAAGCGCCTAGAGGCATAGGTCTACGCT
AGTAGTAATTTTTTATGCCTCGAGAAAGGGCACAAGTTTTTGTCAATGCT
CGTGATCACATCGCCCCCGTTAAGCGATCTAATGCCACTTGTGAAGGAAG
GGGCTGTTGACGGCTTTTGGTAGTGAACGTCAGCGGGGGAACTGAACCGA
GCTGCATCATCAGCGCTCGCATATCCCAAAAGCTAGACGGTCAGCGACCA
GAGCATGTGCGCTCCTGCCGAAAGCGGTAAAGCTGTTTCTAATATAGTTT
CAAGTTTTTAATTACAGCGATATGGCCCCTCTTTGTGCAGGTAACCAGGC
ACGACACCAACGTCCAGGTACCCCTGTACGCTCTGTGGATGCTGGAGGTG
TGTCTCCGACACCAGTTGGGGAACGAGGGAATGGGCGCGGTGGAGCTCTT
CATCCGAACCGAGAGATcCTTAGACCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1236:43185..46162+

>mRNA_F-serratus_M_contig1236.1788.1 ID=mRNA_F-serratus_M_contig1236.1788.1|Name=mRNA_F-serratus_M_contig1236.1788.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig1236:43185..46162+ (Fucus serratus male)
ATGTATGTCTCACTCTACTACAAACTCCTCTTCAAGATAGCGGCGCGGCA
CCCTCCATTCCTTGATCGCCTGAGGAATTCCAACAGCCTGCACTGATGTA
TGTCTCACTCTACTACAAACTCCTCTTCAAGATAGCGGCGCGGCACCCTC
CATTCCTTGATCGCCTGAGGAATTCCAACAGCCTGCACTGGTGCCTCGAG
TCTTTTCTCTTGAGGGGCCACTGTCCCACCTTGGAGATGGCCACCACTCT
TATCTCTATCGTGGAGCTATGCCTGCACCGGTACGGTTTGCCGTTCGCGA
TGGAAGCCATAACCTGGGTCATCGGGTCGCCGGCCATCACTCCCTCCCTC
AAGGTGCCTCGAGTCTTTTCTCTTGAGGGGCCACTGTCCCACCTTGGAGA
TGGCCACCACTCTTATCTCTATCGTGGAGCTATGCCTGCACCGGTACGGT
TTGCCGTTCGCGATGGAAGCCATAACCTGGGTCATCGGGTCGCCGGCCAT
CACTCCCTCCCTCAAGGTAACCAGGCACGACACCAACGTCCAGGTACCCC
TGTACGCTCTGTGGATGCTGGAGGTGTGTCTCCGACACCAGTTGGGGAAC
GAGGGAATGGGCGCGGTGGAGCTCTTCATCCGAACCGAGAGATcCTTAGA
CCAGGTAACCAGGCACGACACCAACGTCCAGGTACCCCTGTACGCTCTGT
GGATGCTGGAGGTGTGTCTCCGACACCAGTTGGGGAACGAGGGAATGGGC
GCGGTGGAGCTCTTCATCCGAACCGAGAGATcCTTAGACCAG
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