mRNA_F-serratus_M_contig6819.17878.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig6819.17878.1
Unique Name	mRNA_F-serratus_M_contig6819.17878.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: D8LTV6_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.000e-32
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1

Query:    1 LHRLGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLWGRDELGRSGAVRAL--VMGGTLGAGSKG 303
            ++R  GMVTW+G E S+GL IEGTGVYRING+LAVAR IGD D+RPW+S E+EI+TI++ R++DQFVILASDGLW  D +    AV+ +  VMGG +G+G +G
Sbjct:  184 IYRHDGMVTWEGFECSRGLQIEGTGVYRINGSLAVARAIGDIDYRPWLSAEVEIKTIDLKRETDQFVILASDGLW--DVMSSEEAVQYVHAVMGGAMGSGKEG 284

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: A0A6H5KKR9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR9_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.790e-31
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1

Query:    1 LHRLGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLWGRDELGRSGAVRAL--VMGGTLGAGSKG 303
            ++R  GMVTW+G E S+GL IEGTGVYRING+LAVAR IGD D+RPW+S E+EI+TI++ R++DQFVILASDGLW  D +    AV+ +  VMGG +G+G +G
Sbjct:  378 IYRHRGMVTWEGFECSRGLQIEGTGVYRINGSLAVARAIGDIDYRPWLSAEVEIKTIDLKRETDQFVILASDGLW--DVMSSEEAVQYVHAVMGGAMGSGKEG 478

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: A0A835Z7U5_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.510e-24
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 1

Query:    1 LHRLGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLWGRDELGRSGAVRAL--VMGGTLGA 291
            +  LGG V W G    +G PIEGTGVYRINGNLAVAR IGD+  RP+VSGE EIR++ ++ + DQF+I+A+DGLW  D +     V+ +  VMGG +GA
Sbjct:  205 IEALGGNVRWFGFIDPEGRPIEGTGVYRINGNLAVARAIGDSSERPFVSGECEIRSMPMDHEGDQFIIIATDGLW--DVMTSDEVVQYVQAVMGGAMGA 301

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: A0A7S2CN51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CN51_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-21
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 1

Query:    1 LHRLGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLW 225
            +  LGG V W G   + G P++GTGVYR+NGNLAV+R +GD+  +P++SGE ++R + ++   DQF+I+ASDGLW
Sbjct:   36 IQALGGNVHWHGFYHADGRPMDGTGVYRVNGNLAVSRAVGDSTEKPFISGEPDVRGVPLDPDGDQFLIVASDGLW 110

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: A0A8K1C3Y4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3Y4_PYTOL)

HSP 1 Score: 93.2 bits (230), Expect = 1.030e-20
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1

Query:    1 LHRLGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLW 225
            + +LGG V W G   +QG PIE  G YRINGNLAVAR IGD D RP+VSGE+EI+  + +   D+F+++ASDGLW
Sbjct:  135 IQKLGGSVKWHGYVDAQGEPIEPYGAYRINGNLAVARAIGDRDLRPYVSGEVEIKQFDRDFTKDEFIVIASDGLW 209

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: M4B3H9_HYAAE (PPM-type phosphatase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3H9_HYAAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.830e-20
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query:    1 LHRLGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLW 225
            +  LGG V W G   +QG PIE  G YR+NGNLAVAR IGD D RP+V+GE+EIR  +I    D+F+++ASDGLW
Sbjct:  308 IESLGGRVQWFGYVDAQGEPIEPYGAYRVNGNLAVARAIGDRDSRPYVNGEVEIRQYDIEHGKDEFIVIASDGLW 382

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: A0A2D4BTH3_PYTIN (PPM-type phosphatase domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTH3_PYTIN)

HSP 1 Score: 93.6 bits (231), Expect = 4.550e-20
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1

Query:    1 LHRLGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLW 225
            +  LGG V W G   +QG+PIE  G YR+NGNLAVAR IGD+D RP+VSG++EI+  E +   D+F++LASDGLW
Sbjct:  204 IEALGGNVRWYGYVDAQGVPIEPYGAYRVNGNLAVARAIGDSDLRPFVSGDVEIKRFERDFDKDEFIVLASDGLW 278

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: A0A0P1AYI9_PLAHL (Protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYI9_PLAHL)

HSP 1 Score: 93.2 bits (230), Expect = 4.580e-20
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1

Query:    1 LHRLGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLW 225
            +  LGG V W G   +QG PIE  G YR+NGNLAVAR IGD D RP+V+GE EIR  +I    D+F+++ASDGLW
Sbjct:  298 IESLGGRVQWFGYVDAQGEPIEPYGAYRVNGNLAVARAIGDRDSRPFVNGEAEIRQYDIEYDKDEFIVIASDGLW 372

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: A0A3M6VI95_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VI95_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.640e-20
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1

Query:    1 LHRLGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLW 225
            +  LGG+V W G   +QG PIE  G YR+NGNLAVAR IGD D RP+V GE EIR  +I    D F+++ASDGLW
Sbjct:  301 IESLGGLVQWHGYVDAQGEPIEPYGAYRVNGNLAVARAIGDRDSRPFVIGEAEIRQYDIEYDKDDFIVIASDGLW 375

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BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Match: A0A7S1UJR9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJR9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.670e-20
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 1

Query:   10 LGGMVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRTIEINRQSDQFVILASDGLWGRDELGRSGAVRAL--VMGGTLGAGSKGS 306
            LGG V W G   ++G P++GTG +RINGNLAV+R  GD   RP+VSGE E+++ E     DQF+I+ASDGLW  D +  S AV+ +  ++ G++GA  +GS
Sbjct:  190 LGGAVKWFGYYDTEGRPVKGTGCWRINGNLAVSRAFGDKYDRPYVSGECELKSFEYREDEDQFIIVASDGLW--DVMSSSEAVQYVQTMLTGSVGALREGS 288

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig6819.17878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LTV6_ECTSI	2.000e-32	61.17	PPM-type phosphatase domain-containing protein n=1...	[more]
A0A6H5KKR9_9PHAE	2.790e-31	61.17	PPM-type phosphatase domain-containing protein n=1...	[more]
A0A835Z7U5_9STRA	3.510e-24	54.55	Phosphatase 2C-like domain-containing protein n=1 ...	[more]
A0A7S2CN51_9STRA	1.100e-21	50.67	Hypothetical protein (Fragment) n=1 Tax=Florenciel...	[more]
A0A8K1C3Y4_PYTOL	1.030e-20	57.33	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
M4B3H9_HYAAE	1.830e-20	57.33	PPM-type phosphatase domain-containing protein n=1...	[more]
A0A2D4BTH3_PYTIN	4.550e-20	57.33	PPM-type phosphatase domain-containing protein n=1...	[more]
A0A0P1AYI9_PLAHL	4.580e-20	57.33	Protein n=1 Tax=Plasmopara halstedii TaxID=4781 Re...	[more]
A0A3M6VI95_9STRA	4.640e-20	57.33	PPM-type phosphatase domain-containing protein n=1...	[more]
A0A7S1UJR9_9STRA	7.670e-20	48.51	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig6819	contig	F-serratus_M_contig6819:25442..26187 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	120.6
Seed ortholog evalue	4.2e-25
Seed eggNOG ortholog	2880.D8LTV6
Hectar predicted targeting category	other localisation
EggNOG free text desc.	protein serine/threonine phosphatase activity
EggNOG OGs	COG0631@1,KOG0698@2759
COG Functional cat.	T
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	313
Cds size	294
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig6819.17878.1	prot_F-serratus_M_contig6819.17878.1	Fucus serratus male	polypeptide	F-serratus_M_contig6819 25460..26187 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932087.9010873-UTR-F-serratus_M_contig6819:25441..25459	1622932087.9010873-UTR-F-serratus_M_contig6819:25441..25459	Fucus serratus male	UTR	F-serratus_M_contig6819 25442..25459 +
1690964141.0076656-UTR-F-serratus_M_contig6819:25441..25459	1690964141.0076656-UTR-F-serratus_M_contig6819:25441..25459	Fucus serratus male	UTR	F-serratus_M_contig6819 25442..25459 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932087.9248297-CDS-F-serratus_M_contig6819:25459..25589	1622932087.9248297-CDS-F-serratus_M_contig6819:25459..25589	Fucus serratus male	CDS	F-serratus_M_contig6819 25460..25589 +
1690964141.0214846-CDS-F-serratus_M_contig6819:25459..25589	1690964141.0214846-CDS-F-serratus_M_contig6819:25459..25589	Fucus serratus male	CDS	F-serratus_M_contig6819 25460..25589 +
1622932087.9485064-CDS-F-serratus_M_contig6819:26023..26187	1622932087.9485064-CDS-F-serratus_M_contig6819:26023..26187	Fucus serratus male	CDS	F-serratus_M_contig6819 26024..26187 +
1690964141.0317264-CDS-F-serratus_M_contig6819:26023..26187	1690964141.0317264-CDS-F-serratus_M_contig6819:26023..26187	Fucus serratus male	CDS	F-serratus_M_contig6819 26024..26187 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig6819:25442..26187+
coding sequence from alignment at F-serratus_M_contig6819:25442..26187+

protein sequence of mRNA_F-serratus_M_contig6819.17878.1

>prot_F-serratus_M_contig6819.17878.1 ID=prot_F-serratus_M_contig6819.17878.1|Name=mRNA_F-serratus_M_contig6819.17878.1|organism=Fucus serratus male|type=polypeptide|length=98bp
MVTWDGLESSQGLPIEGTGVYRINGNLAVARTIGDADHRPWVSGEMEIRT
IEINRQSDQFVILASDGLWGRDELGRSGAVRALVMGGTLGAGSKGSGE

mRNA from alignment at F-serratus_M_contig6819:25442..26187+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig6819.17878.1 ID=mRNA_F-serratus_M_contig6819.17878.1|Name=mRNA_F-serratus_M_contig6819.17878.1|organism=Fucus serratus male|type=mRNA|length=746bp|location=Sequence derived from alignment at F-serratus_M_contig6819:25442..26187+ (Fucus serratus male)
CTGCACAGGCTCGGTGGAATGGTGACATGGGACGGTCTAGAGTCCTCGCA
AGGCTTGCCGATAGAGGGTACCGGGGTTTACCGCATCAACGGGAATCTAG
CCGTCGCCAGGACAATCGGGGACGCAGACCACCGCCCGTGGGTATCTGGT
GAGCATGTCCAATGGGCACGTTTACAGTACTCCCCTTGTAGTACTCCGCC
ACCCATTCATCTATATATCGAATTGGAAGAAATTGATGGAAACTGGAACG
CGCAATGATAAGGCAAAGCGTTTAGAGCTTAGACTTGCCCAAATTAGTCG
AAAAGGCGAGGAGTATCAAGAAGCGCAACATATCCTCACGGGTACGAGGA
GGCGTTCTTATACGCGCGCTGCAGCTACCGGATGATGAATCGCCGTGTAC
TACCTTATAATGCTTTTCCTCCTTTCTGTTGCAGAGAAAAAATGTTATGA
TGGTTACACGTCAAACTCACGGACACCCACACTCAAGACACACTCGAAGG
CTGCTTCACCGCCCACGGCAACATATGCCCTTATATCCTCTCGCGTGATA
CGCCCACCCGGTCGCTTATTGTATTCCTGCAGGTGAAATGGAGATCCGAA
CAATCGAAATCAACCGCCAATCAGACCAGTTCGTGATCCTTGCGAGCGAC
GGACTGTGGGGACGTGATGAGCTCGGAAGAAGCGGTGCAGTACGTGCGCT
CGTCATGGGGGGAACCCTCGGGGCGGGCAGCAAAGGGAGCGGGGAG

Coding sequence (CDS) from alignment at F-serratus_M_contig6819:25442..26187+

>mRNA_F-serratus_M_contig6819.17878.1 ID=mRNA_F-serratus_M_contig6819.17878.1|Name=mRNA_F-serratus_M_contig6819.17878.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig6819:25442..26187+ (Fucus serratus male)
ATGGTGACATGGGACGGTCTAGAGTCCTCGCAAGGCTTGCCGATAGAGGG
TACCGGGGTTTACCGCATCAACGGGAATCTAGCCGTCGCCAGGACAATCG
GGGACGCAGACCACCGCCCGTGGGTATCTGATGGTGACATGGGACGGTCT
AGAGTCCTCGCAAGGCTTGCCGATAGAGGGTACCGGGGTTTACCGCATCA
ACGGGAATCTAGCCGTCGCCAGGACAATCGGGGACGCAGACCACCGCCCG
TGGGTATCTGGTGAAATGGAGATCCGAACAATCGAAATCAACCGCCAATC
AGACCAGTTCGTGATCCTTGCGAGCGACGGACTGTGGGGACGTGATGAGC
TCGGAAGAAGCGGTGCAGTACGTGCGCTCGTCATGGGGGGAACCCTCGGG
GCGGGCAGCAAAGGGAGCGGGGAGGTGAAATGGAGATCCGAACAATCGAA
ATCAACCGCCAATCAGACCAGTTCGTGATCCTTGCGAGCGACGGACTGTG
GGGACGTGATGAGCTCGGAAGAAGCGGTGCAGTACGTGCGCTCGTCATGG
GGGGAACCCTCGGGGCGGGCAGCAAAGGGAGCGGGGAG