mRNA_F-serratus_M_contig6819.17877.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6819.17877.1
Unique NamemRNA_F-serratus_M_contig6819.17877.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6819.17877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6819contigF-serratus_M_contig6819:3480..3782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size304
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932087.8415701-CDS-F-serratus_M_contig6819:3479..37821622932087.8415701-CDS-F-serratus_M_contig6819:3479..3782Fucus serratus maleCDSF-serratus_M_contig6819 3480..3782 +
1690964140.9943235-CDS-F-serratus_M_contig6819:3479..37821690964140.9943235-CDS-F-serratus_M_contig6819:3479..3782Fucus serratus maleCDSF-serratus_M_contig6819 3480..3782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6819.17877.1prot_F-serratus_M_contig6819.17877.1Fucus serratus malepolypeptideF-serratus_M_contig6819 3480..3782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6819.17877.1

>prot_F-serratus_M_contig6819.17877.1 ID=prot_F-serratus_M_contig6819.17877.1|Name=mRNA_F-serratus_M_contig6819.17877.1|organism=Fucus serratus male|type=polypeptide|length=101bp
ATPTAVADPIRTPEGANKVYCKPDSEESPVTTEALVGGRECDHRCEGTTT
SRRQIVGGGGGDGDANGKNQVSAIIPTAASNAAGVGGTSHQRQPPSRKTH
*
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mRNA from alignment at F-serratus_M_contig6819:3480..3782+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6819.17877.1 ID=mRNA_F-serratus_M_contig6819.17877.1|Name=mRNA_F-serratus_M_contig6819.17877.1|organism=Fucus serratus male|type=mRNA|length=303bp|location=Sequence derived from alignment at F-serratus_M_contig6819:3480..3782+ (Fucus serratus male)
GCTACCCCGACTGCAGTGGCCGACCCTATCCGTACCCCTGAGGGCGCCAA
CAAGGTATACTGTAAACCCGACTCGGAGGAATCGCCAGTAACTACCGAAG
CCTTGGTAGGGGGTAGAGAGTGTGACCATAGGTGCGAGGGCACGACGACT
AGCCGCCGTCAGATTGTTGGCGGCGGAGGAGGCGATGGAGATGCTAATGG
TAAGAACCAGGTCTCGGCTATCATCCCCACGGCAGCGTCAAACGCGGCCG
GAGTAGGGGGGACAAGTCATCAACGTCAGCCCCCCTCAAGAAAAACACAC
TGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6819:3480..3782+

>mRNA_F-serratus_M_contig6819.17877.1 ID=mRNA_F-serratus_M_contig6819.17877.1|Name=mRNA_F-serratus_M_contig6819.17877.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig6819:3480..3782+ (Fucus serratus male)
GCTACCCCGACTGCAGTGGCCGACCCTATCCGTACCCCTGAGGGCGCCAA
CAAGGTATACTGTAAACCCGACTCGGAGGAATCGCCAGTAACTACCGAAG
CCTTGGTAGGGGGTAGAGAGTGTGACCATAGGTGCGAGGGCACGACGACT
AGCCGCCGTCAGATTGTTGGCGGCGGAGGAGGCGATGGAGATGCTAATGG
TAAGAACCAGGTCTCGGCTATCATCCCCACGGCAGCGTCAAACGCGGCCG
GAGTAGGGGGGACAAGTCATCAACGTCAGCCCCCCTCAAGAAAAACACAC
TGAGCTACCCCGACTGCAGTGGCCGACCCTATCCGTACCCCTGAGGGCGC
CAACAAGGTATACTGTAAACCCGACTCGGAGGAATCGCCAGTAACTACCG
AAGCCTTGGTAGGGGGTAGAGAGTGTGACCATAGGTGCGAGGGCACGACG
ACTAGCCGCCGTCAGATTGTTGGCGGCGGAGGAGGCGATGGAGATGCTAA
TGGTAAGAACCAGGTCTCGGCTATCATCCCCACGGCAGCGTCAAACGCGG
CCGGAGTAGGGGGGACAAGTCATCAACGTCAGCCCCCCTCAAGAAAAACA
CACTGA
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