mRNA_F-serratus_M_contig6809.17868.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6809.17868.1
Unique NamemRNA_F-serratus_M_contig6809.17868.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.950e-25
Identity = 67/182 (36.81%), Postives = 85/182 (46.70%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPFLNGQAWAESARSHDS-------------------------------------------SKTGQ------------------------GGGTLYDLQAVVVHRGSADSGHYHALIR 345
            E L+GD++YFC  C++K+DA RSQ    +PPVL+FSLNR +      +R K  + FKYPL LDMEPF+ G+AW+ +  S +S                                           S  GQ                        GGG +Y+L AVVVHRGSA SGHYHALIR
Sbjct:  322 ERLSGDNKYFCDQCQEKQDALRSQTLRALPPVLIFSLNRFEFDFETMERVKVKQEFKYPLTLDMEPFVEGRAWSGNDNSDESQVPDLAGDPEVPGTCRNRQKWVPQAWNDAQAEAITLQTSLAATSDPGQASKFDGDGGRAGGIGDGLRREEDEGGGLVYELLAVVVHRGSAYSGHYHALIR 503          
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: A0A835YZ71_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ71_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.030e-20
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPFLNGQAWAESARSHDSSKTGQGGGTLYDLQAVVVHRGSADSGHYHALIR 345
            E + G++QY+C  C++K D  R Q    +PP+L+FSLNR        +R K    F++PLVLD  PF+N Q                    LYDL  VV+HRGSA SGHYHA IR
Sbjct:  186 EAMVGENQYWCERCDRKVDGERRQMLRELPPLLVFSLNRFQFDMKTMERVKVSAKFEFPLVLDTAPFVNDQDG------------------LYDLLGVVLHRGSAYSGHYHAYIR 282          
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: A0A1Y1IFY9_KLENI (Ubiquitin carboxyl-terminal hydrolase 7 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFY9_KLENI)

HSP 1 Score: 93.2 bits (230), Expect = 9.800e-20
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPFLNGQAWAESARSHDSSKTGQ-------GGGTLYDLQAVVVHRGSADSGHYHALIR 345
            E L GD+QYFC  C+ K DA RSQ   ++PP+L   L R +      +R K    F +PL L++ P++   +      +HD++  G        GG  L+DL +VV+H GSA SGHYHA IR
Sbjct:  422 EMLDGDNQYFCERCQAKVDAQRSQRFRSLPPLLTLPLCRFEYDWDRDERRKITTPFSFPLTLNLAPYMAPPSSDGQPANHDAAANGSAGAPGGPGGAALFDLLSVVIHSGSAHSGHYHAYIR 543          
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: A0A6H5JBL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.240e-19
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPFLNGQAWAESARSHDS 246
            E L+GD++YFC  C++K+DA RSQ    +PPVL+FSLNR +      +R K  + FKYPL LDMEPF+ G+AW+ +  S +S
Sbjct:  243 ERLSGDNKYFCDQCQEKQDALRSQTLRALPPVLIFSLNRFEFDFETMERVKVKQEFKYPLTLDMEPFVEGRAWSGNDNSDES 324          
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: A0A8B7Z9Y1_ACAPL (Ubiquitinyl hydrolase 1 n=8 Tax=Valvatida TaxID=41166 RepID=A0A8B7Z9Y1_ACAPL)

HSP 1 Score: 85.1 bits (209), Expect = 6.740e-17
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPF-LNGQAWAESARSHDSSKTGQGGGT-------LYDLQAVVVHRGSADSGHYHALIR 345
            E L GD+ YFC  C +K++  +     T+PPVL+  L R D     G   K  + FK+P VLDMEP+ + G A  ES +S ++S       +       LY L  V+VH G A++GHY++ I+
Sbjct: 1814 ELLDGDNAYFCEKCNEKRNTIKRMCIKTLPPVLVIQLKRFDYDWEAGRALKFDDYFKFPWVLDMEPYTVKGMARRESPQSDEASSGEMPDNSQPHTMEDLYHLVGVIVHSGQANAGHYYSFIK 1936          
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: A0A0L0DDM4_THETB (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDM4_THETB)

HSP 1 Score: 79.0 bits (193), Expect = 9.390e-15
Identity = 45/115 (39.13%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPFLNGQAWAESARSHDSSKTGQGGGTLYDLQAVVVHRGSADSGHYHALIR 345
            E LTGD+QY C  CE K DA +      +PPVL F L R         R K ++   +PLVLDM P++     A+S  +            LYD  AV++H GSA SGHY A ++
Sbjct:  262 ERLTGDNQYACSGCETKVDADKGLTFGDLPPVLSFQLKRFVYDWQANRRVKLNQKLTFPLVLDMAPYM-----ADSGEAP----------MLYDAYAVLLHSGSAHSGHYFAFVK 361          
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: A0A2P6V3S3_9CHLO (Ubiquitin carboxyl-terminal hydrolase 26 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V3S3_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 9.560e-15
Identity = 47/116 (40.52%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPFLNGQAWAESARSHDSSKTGQGGGTLYDLQAVVVHRG-SADSGHYHALIR 345
            E + GD+QY C  C +K DA R Q   ++PPVL  SL R        DR K  + F +PL LDM PF+  Q                 G  LYDL+A++VH+G SA +GHY A I+
Sbjct:  277 EFMDGDNQYHCDYCAKKVDATRQQELRSLPPVLCMSLRRFVFDFQRMDRIKVSDKFAFPLALDMAPFVGQQP----------------GSMLYDLEAIMVHKGGSALAGHYVAHIK 376          
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: A9V5C2_MONBE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V5C2_MONBE)

HSP 1 Score: 78.6 bits (192), Expect = 1.270e-14
Identity = 49/116 (42.24%), Postives = 58/116 (50.00%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPFLNGQAWAESARSHDSSKTGQGGGTLYDLQAVVVHRGS-ADSGHYHALIR 345
            E LTGD+QY C  CE K DA R      +P VL   L R         + K  +AF++P VLDM  F      A+  RS D          LYDL AV++HRGS A  GHY A IR
Sbjct:  306 EHLTGDNQYHCSQCEAKHDAARQVLLDQLPDVLHLQLMRFVYDLTTFRKKKVTKAFRFPAVLDMSAFAKTTQGAKKRRSSDR---------LYDLSAVLLHRGSSATCGHYMAQIR 412          
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: UPI001455A988 (ubiquitin carboxyl-terminal hydrolase 24-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455A988)

HSP 1 Score: 78.6 bits (192), Expect = 1.330e-14
Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPF-LNGQAWAESARSHDSSK------------TGQGGGTLYDLQAVVVHRGSADSGHYHALIR 345
            E L GD+ YFC  C +K++  +     T+PPVL+  L R D     G   K  + FK+P +LDMEP+ + G A  ES +  +S              T       Y L  V+VH G A++GHY++ I+
Sbjct: 1795 EMLDGDNAYFCEKCNEKRNTIKRTCIKTLPPVLVIQLKRFDYDWEAGRALKFDDYFKFPWLLDMEPYTVRGTARRESQQPVESQPDASPETHKEKLLTQNSSEDWYQLVGVIVHSGQANAGHYYSFIK 1922          
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Match: A0A397UDV5_9GLOM (Ubiquitinyl hydrolase 1 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UDV5_9GLOM)

HSP 1 Score: 77.8 bits (190), Expect = 2.480e-14
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    1 EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRTKAHEAFKYPLVLDMEPFLNGQAWAESARSHDSSKTGQGGGTL--YDLQAVVVHRGSADSGHYHALIR 345
            E L GD+QYFC  C +  DA +     T+P  L+  L R D       R K +E F++P  ++MEP+       + +   D SK   G  +   Y+L  V+VH G+ADSGHY++ I+
Sbjct: 1904 ELLDGDNQYFCAKCNKSVDAIKRSCIKTLPKNLIMHLKRFDFDMELLKRVKINELFEFPTHINMEPYTLDYLIRKESGQLDDSKVDVGNKSQFEYELVGVLVHTGTADSGHYYSFIK 2020          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6809.17868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSX8_ECTSI3.950e-2536.81Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=... [more]
A0A835YZ71_9STRA1.030e-2042.61USP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A1Y1IFY9_KLENI9.800e-2040.16Ubiquitin carboxyl-terminal hydrolase 7 n=1 Tax=Kl... [more]
A0A6H5JBL7_9PHAE1.240e-1950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8B7Z9Y1_ACAPL6.740e-1737.40Ubiquitinyl hydrolase 1 n=8 Tax=Valvatida TaxID=41... [more]
A0A0L0DDM4_THETB9.390e-1539.13Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thec... [more]
A0A2P6V3S3_9CHLO9.560e-1540.52Ubiquitin carboxyl-terminal hydrolase 26 n=1 Tax=M... [more]
A9V5C2_MONBE1.270e-1442.24Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Mono... [more]
UPI001455A9881.330e-1434.38ubiquitin carboxyl-terminal hydrolase 24-like n=1 ... [more]
A0A397UDV5_9GLOM2.480e-1435.90Ubiquitinyl hydrolase 1 n=2 Tax=Gigaspora TaxID=48... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6809contigF-serratus_M_contig6809:6801..8579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue9.7e-21
Seed eggNOG ortholog2880.D7FSX8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsCOG5077@1,KOG4598@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size348
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6809.17868.1prot_F-serratus_M_contig6809.17868.1Fucus serratus malepolypeptideF-serratus_M_contig6809 6801..8577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932086.4281168-CDS-F-serratus_M_contig6809:6800..69161622932086.4281168-CDS-F-serratus_M_contig6809:6800..6916Fucus serratus maleCDSF-serratus_M_contig6809 6801..6916 +
1690964140.368836-CDS-F-serratus_M_contig6809:6800..69161690964140.368836-CDS-F-serratus_M_contig6809:6800..6916Fucus serratus maleCDSF-serratus_M_contig6809 6801..6916 +
1622932086.4732156-CDS-F-serratus_M_contig6809:7601..77371622932086.4732156-CDS-F-serratus_M_contig6809:7601..7737Fucus serratus maleCDSF-serratus_M_contig6809 7602..7737 +
1690964140.3825257-CDS-F-serratus_M_contig6809:7601..77371690964140.3825257-CDS-F-serratus_M_contig6809:7601..7737Fucus serratus maleCDSF-serratus_M_contig6809 7602..7737 +
1622932086.4993181-CDS-F-serratus_M_contig6809:8484..85771622932086.4993181-CDS-F-serratus_M_contig6809:8484..8577Fucus serratus maleCDSF-serratus_M_contig6809 8485..8577 +
1690964140.3939686-CDS-F-serratus_M_contig6809:8484..85771690964140.3939686-CDS-F-serratus_M_contig6809:8484..8577Fucus serratus maleCDSF-serratus_M_contig6809 8485..8577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6809.17868.1

>prot_F-serratus_M_contig6809.17868.1 ID=prot_F-serratus_M_contig6809.17868.1|Name=mRNA_F-serratus_M_contig6809.17868.1|organism=Fucus serratus male|type=polypeptide|length=115bp
EPLTGDSQYFCYNCEQKKDAFRSQYPATVPPVLMFSLNRLDSFSADGDRT
KAHEAFKYPLVLDMEPFLNGQAWAESARSHDSSKTGQGGGTLYDLQAVVV
HRGSADSGHYHALIR
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mRNA from alignment at F-serratus_M_contig6809:6801..8579+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6809.17868.1 ID=mRNA_F-serratus_M_contig6809.17868.1|Name=mRNA_F-serratus_M_contig6809.17868.1|organism=Fucus serratus male|type=mRNA|length=1779bp|location=Sequence derived from alignment at F-serratus_M_contig6809:6801..8579+ (Fucus serratus male)
GAGCCACTGACTGGGGACAGTCAGTACTTCTGTTACAATTGCGAGCAGAA GAAGGACGCCTTCCGTTCACAATACCCGGCGACTGTTCCTCCCGTCTTAA TGTTCAGCCTGAACAGGTACAGTACAGTACAGTACGGTACTATTATAATA CTAATACTATTAATAATACTATCGTTCCAACTGTAAAGTACTCTGTAGTT CACACTTACGATTAGATTAAGTATCTCCTGTCTCTGTTTTCCTGACACAA CTACTGTATACAGTATTAACAGGTCAAAAATGCATGCTGCCGCACGATTT ATTTGTGGACGGGACGGGACGGGACAGCTGTCTTCCACTTAATCCAAACC ACCAAACCAAACCAAACCAAACCAAACCGAACCAATCCTCTGAGGTGTCG AGTCGTTCTTCCGATACGTAATTGTACCAAATGGCACTTTATTGGTGCCA TAATCACTCTGGTTGCCCTAAGCTCCCTCTGTTCGTCTCTTTGTCTAAAT CTAAATATACCTGGTATTAAATAATTTGCTCTGCGTCTGTTTGGAATTTT AGAGCTATACGGTACCTACTACCAGTATGATATAACCCTCTAATACCTAC CTGGTACCTGGTATTATATACCTGGTACCTATATATATACCTATTATATA CCTAGGTATTGTTTACCGTACCTATTAATAGCTAGCTCTATCGCTTTCAT CCACACGAGGGTTAAGTTAACCTTTCCTCCATGCCCGCCCGCTGTCTGTT GTCTGCGACATGATAAATAATTGAACGCAATGGAATGGGATACTTTCGAA GGCTCGACTCTTTCAGTGCAGATGGTGACCGCACGAAGGCCCACGAGGCC TTCAAGTACCCGTTGGTGCTCGACATGGAACCGTTCCTCAACGGACAAGC GTGGGCCGAGTCGGCCCGTTCGCACGACAGTAGTAAGGTCAGATCCAATC CTAGAGTAATTTGTACTCAAGCGCTAACTATTAATAATACACTACCTGGT ATCATTACCAGGTATCGAATACTGGTACCAGGTAATATTTTCGACCCGAA ATAATCGTCCCATATCGTCCATTTTTACCATCAATATCCCATGTTAACTG TTTTGACTCGAACATATTTGTCCAGAATAGCCATTATGGGAACCATGGCG GAATCAACCGCTCGTTTCAGAAACAAGTCATTAATATTACAGTATACTGG TAGTATATAATATTTTACTCTAGTACCAGTATAATAATATCAGCACTATT ATACTATTATACTATTAATATCAATAATAATGTGTATTTTGATGGTGTGA AGATGCGCTGGAAGAAATGACTCCAAACCATAATTGATAATAGCCCAATG TATAGACTAGACTAGTATGGTTAGACCTTTTTTTTCCAAACGTGACCCAA TTTTCCTAATGTCTTGTTTCTAAAGTTGGGAACTGAACAGTCGTTTAGAA CGGGCCTTACTGCTGATTTTCCGATTTTCCCTTAAGGACGCCGTCGCCCG CCTGCTGAGTGCTGTTTGGGGTTGCGATGCTCGAATTTCAGCGTGATGCG TCCCAGACATGAAAACTACCTACCTGGTAGGGTACTACCGGTACAATATT AATATTAATACATTGTCCAATTGGGGCAAGAAAGCACCTCTCCCCGCTCT CCACCCGTTGGCCCGTTGATCCCTTGACCGACAGACGGGCCAAGGCGGGG GGACCTTGTATGACCTCCAGGCGGTGGTGGTCCATCGTGGAAGCGCTGAC TCGGGTCACTACCATGCATTGATCAGAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6809:6801..8579+

>mRNA_F-serratus_M_contig6809.17868.1 ID=mRNA_F-serratus_M_contig6809.17868.1|Name=mRNA_F-serratus_M_contig6809.17868.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig6809:6801..8579+ (Fucus serratus male)
GAGCCACTGACTGGGGACAGTCAGTACTTCTGTTACAATTGCGAGCAGAA
GAAGGACGCCTTCCGTTCACAATACCCGGCGACTGTTCCTCCCGTCTTAA
TGTTCAGCCTGAACAGGAGCCACTGACTGGGGACAGTCAGTACTTCTGTT
ACAATTGCGAGCAGAAGAAGGACGCCTTCCGTTCACAATACCCGGCGACT
GTTCCTCCCGTCTTAATGTTCAGCCTGAACAGGCTCGACTCTTTCAGTGC
AGATGGTGACCGCACGAAGGCCCACGAGGCCTTCAAGTACCCGTTGGTGC
TCGACATGGAACCGTTCCTCAACGGACAAGCGTGGGCCGAGTCGGCCCGT
TCGCACGACAGTAGTAAGGCTCGACTCTTTCAGTGCAGATGGTGACCGCA
CGAAGGCCCACGAGGCCTTCAAGTACCCGTTGGTGCTCGACATGGAACCG
TTCCTCAACGGACAAGCGTGGGCCGAGTCGGCCCGTTCGCACGACAGTAG
TAAGACGGGCCAAGGCGGGGGGACCTTGTATGACCTCCAGGCGGTGGTGG
TCCATCGTGGAAGCGCTGACTCGGGTCACTACCATGCATTGATCAGAACG
GGCCAAGGCGGGGGGACCTTGTATGACCTCCAGGCGGTGGTGGTCCATCG
TGGAAGCGCTGACTCGGGTCACTACCATGCATTGATCAGA
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