mRNA_F-serratus_M_contig680.17856.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig680.17856.1
Unique NamemRNA_F-serratus_M_contig680.17856.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig680.17856.1 vs. uniprot
Match: D8LLI4_ECTSI (SEN1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.360e-11
Identity = 34/65 (52.31%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    1 TDTIDLTGDSPSSNLVGGGPVLSFREEYDELLSGLDGEGAGSGLWFPFEAVAELLLRHPEHWWCR 195
            TDTIDLT     +       +  F +EYD+L     G G      FPFEAVAELLLRHPEHWWCR
Sbjct:   55 TDTIDLTAAGCEA------AISRFEQEYDDLHRSAQGFG------FPFEAVAELLLRHPEHWWCR 107
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig680.17856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLI4_ECTSI2.360e-1152.31SEN1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig680contigF-serratus_M_contig680:216595..216798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932083.6961703-CDS-F-serratus_M_contig680:216594..2167981622932083.6961703-CDS-F-serratus_M_contig680:216594..216798Fucus serratus maleCDSF-serratus_M_contig680 216595..216798 -
1690964138.9245665-CDS-F-serratus_M_contig680:216594..2167981690964138.9245665-CDS-F-serratus_M_contig680:216594..216798Fucus serratus maleCDSF-serratus_M_contig680 216595..216798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig680.17856.1prot_F-serratus_M_contig680.17856.1Fucus serratus malepolypeptideF-serratus_M_contig680 216595..216798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig680.17856.1

>prot_F-serratus_M_contig680.17856.1 ID=prot_F-serratus_M_contig680.17856.1|Name=mRNA_F-serratus_M_contig680.17856.1|organism=Fucus serratus male|type=polypeptide|length=68bp
TDTIDLTGDSPSSNLVGGGPVLSFREEYDELLSGLDGEGAGSGLWFPFEA
VAELLLRHPEHWWCRQG*
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mRNA from alignment at F-serratus_M_contig680:216595..216798-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig680.17856.1 ID=mRNA_F-serratus_M_contig680.17856.1|Name=mRNA_F-serratus_M_contig680.17856.1|organism=Fucus serratus male|type=mRNA|length=204bp|location=Sequence derived from alignment at F-serratus_M_contig680:216595..216798- (Fucus serratus male)
ACAGACACTATCGACCTCACTGGAGACTCTCCTTCTTCGAACCTCGTGGG
AGGAGGTCCTGTCCTGAGCTTTCGGGAGGAGTACGACGAGCTTCTATCCG
GCCTGGATGGGGAAGGGGCGGGATCTGGCCTGTGGTTTCCCTTTGAGGCC
GTTGCTGAGCTGCTGCTCAGGCACCCGGAACACTGGTGGTGTAGGCAAGG
CTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig680:216595..216798-

>mRNA_F-serratus_M_contig680.17856.1 ID=mRNA_F-serratus_M_contig680.17856.1|Name=mRNA_F-serratus_M_contig680.17856.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig680:216595..216798- (Fucus serratus male)
ACAGACACTATCGACCTCACTGGAGACTCTCCTTCTTCGAACCTCGTGGG
AGGAGGTCCTGTCCTGAGCTTTCGGGAGGAGTACGACGAGCTTCTATCCG
GCCTGGATGGGGAAGGGGCGGGATCTGGCCTGTGGTTTCCCTTTGAGGCC
GTTGCTGAGCTGCTGCTCAGGCACCCGGAACACTGGTGGTGTAGGCAAGG
CTAGACAGACACTATCGACCTCACTGGAGACTCTCCTTCTTCGAACCTCG
TGGGAGGAGGTCCTGTCCTGAGCTTTCGGGAGGAGTACGACGAGCTTCTA
TCCGGCCTGGATGGGGAAGGGGCGGGATCTGGCCTGTGGTTTCCCTTTGA
GGCCGTTGCTGAGCTGCTGCTCAGGCACCCGGAACACTGGTGGTGTAGGC
AAGGCTAG
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