mRNA_F-serratus_M_contig68.17843.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig68.17843.1
Unique NamemRNA_F-serratus_M_contig68.17843.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig68.17843.1 vs. uniprot
Match: D8LK01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK01_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.070e-26
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:   39 MSLQGSIHKLSDGIGYGAYVPPARVYYDDRKPTSKRLRRASSERTN-YRRQNATAGVDTHRSDISFGKTLDSIKTGEESDSRAREATKFLTSGEV 320
            MSLQGSIH  SDGIGYGA++P  R Y++ R P +  +RR SSE    YRR N TAG+DTHRSD+SFG+  +SI+ G + DSRAREATK LTSGEV
Sbjct:    1 MSLQGSIHTWSDGIGYGAFMPTDRAYFNVRTPRAS-VRRPSSENVREYRRNNVTAGIDTHRSDVSFGRNTESIRGGVDGDSRAREATKSLTSGEV 94
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BLAST of mRNA_F-serratus_M_contig68.17843.1 vs. uniprot
Match: A0A6H5KS57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS57_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.760e-20
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 3 
Query:  867 PQQRDLDPVFNKHRKYDLIAHRRGAQGREVTGRFGSVNVDSVMAVSQLNSELSTPWSHVLRGQKW 1061
            P+ R LDPVF++H KYDL+A  R A+G  VTGRFG +   SV+A S L SELSTPWSHVLRGQKW
Sbjct:   12 PRFRSLDPVFDRHHKYDLVAEERAAEGMMVTGRFGPIQGPSVLAASLLTSELSTPWSHVLRGQKW 76
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BLAST of mRNA_F-serratus_M_contig68.17843.1 vs. uniprot
Match: A0A835YTX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.840e-10
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 3 
Query:   45 LQGSIHKLSDGIGYGAYVPPARVYY--------DDRKPTSKRLRRASSERTNYRRQNATAGVDTHRSDISFGKTLDSIKTGEESDSRAREATKFLTSGEV 320
            + GS H+++DG G G YVP  + +Y        D R+PT++           YRR N+  G++THRSDIS+G T+  I TG  ++  A      LTSGEV
Sbjct:    1 MHGSKHRMTDGYGCGQYVPSDKAFYNMHTARPGDHRRPTNQ----------TYRRDNSLVGIETHRSDISYGHTVARISTGPNAERLATLHATMLTSGEV 90
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig68.17843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LK01_ECTSI3.070e-2663.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS57_9PHAE2.760e-2066.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YTX7_9STRA1.840e-1039.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig68contigF-serratus_M_contig68:905205..907544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_007640.1
Exons2
Model size1284
Cds size1026
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig68.17843.1prot_F-serratus_M_contig68.17843.1Fucus serratus malepolypeptideF-serratus_M_contig68 905425..907506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932080.2496576-UTR-F-serratus_M_contig68:905204..9054241622932080.2496576-UTR-F-serratus_M_contig68:905204..905424Fucus serratus maleUTRF-serratus_M_contig68 905205..905424 -
1690964136.979208-UTR-F-serratus_M_contig68:905204..9054241690964136.979208-UTR-F-serratus_M_contig68:905204..905424Fucus serratus maleUTRF-serratus_M_contig68 905205..905424 -
1622932080.3086028-UTR-F-serratus_M_contig68:907506..9075441622932080.3086028-UTR-F-serratus_M_contig68:907506..907544Fucus serratus maleUTRF-serratus_M_contig68 907507..907544 -
1690964137.014675-UTR-F-serratus_M_contig68:907506..9075441690964137.014675-UTR-F-serratus_M_contig68:907506..907544Fucus serratus maleUTRF-serratus_M_contig68 907507..907544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932080.2699943-CDS-F-serratus_M_contig68:905424..9061711622932080.2699943-CDS-F-serratus_M_contig68:905424..906171Fucus serratus maleCDSF-serratus_M_contig68 905425..906171 -
1690964136.992122-CDS-F-serratus_M_contig68:905424..9061711690964136.992122-CDS-F-serratus_M_contig68:905424..906171Fucus serratus maleCDSF-serratus_M_contig68 905425..906171 -
1622932080.286751-CDS-F-serratus_M_contig68:907227..9075061622932080.286751-CDS-F-serratus_M_contig68:907227..907506Fucus serratus maleCDSF-serratus_M_contig68 907228..907506 -
1690964137.0036805-CDS-F-serratus_M_contig68:907227..9075061690964137.0036805-CDS-F-serratus_M_contig68:907227..907506Fucus serratus maleCDSF-serratus_M_contig68 907228..907506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig68.17843.1

>prot_F-serratus_M_contig68.17843.1 ID=prot_F-serratus_M_contig68.17843.1|Name=mRNA_F-serratus_M_contig68.17843.1|organism=Fucus serratus male|type=polypeptide|length=342bp
MSLQGSIHKLSDGIGYGAYVPPARVYYDDRKPTSKRLRRASSERTNYRRQ
NATAGVDTHRSDISFGKTLDSIKTGEESDSRAREATKFLTSGEVGNFCWS
AEQARSGADGDVIFGVVSPKKSLPAHARSYVGQRNVGANTEGTVEGGREG
RQDQNQSIIVGSCMTTARSSLTSFNNSGGSTRRSNSSTVTSSVSHKSSRT
SSSPRSARCCECSCSSSGDSQQTTRTNPLGITRGVSVARHLSNRSCKLSS
TSSGSEREKRLRSRLIRDGQAPLEWLPQQRDLDPVFNKHRKYDLIAHRRG
AQGREVTGRFGSVNVDSVMAVSQLNSELSTPWSHVLRGQKW*
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mRNA from alignment at F-serratus_M_contig68:905205..907544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig68.17843.1 ID=mRNA_F-serratus_M_contig68.17843.1|Name=mRNA_F-serratus_M_contig68.17843.1|organism=Fucus serratus male|type=mRNA|length=2340bp|location=Sequence derived from alignment at F-serratus_M_contig68:905205..907544- (Fucus serratus male)
AACAGCTGAGGCAAGCATTAGGGGAAACGGACATAAATATGAGTTTGCAA
GGTTCCATCCATAAGTTGTCGGACGGGATCGGGTACGGTGCCTACGTACC
TCCCGCACGGGTGTACTACGACGATCGGAAGCCTACATCAAAAAGATTGC
GGCGGGCATCAAGTGAGAGAACGAACTACCGGAGACAGAATGCTACGGCT
GGGGTCGATACACACCGCTCTGACATTTCGTTTGGGAAGACTTTGGATAG
CATCAAGACTGGAGAAGAGAGTGACTCCAGAGCAAGAGAGGCGACCAAAT
TCTTGACAAGTGGAGAGGTGACGCAATTTTTAAAAATTTAGATTTTTTCT
CCTTTTTTTCGACTATTAATAGTAGACGTGGACGGGTAAGCGCTTCTACC
TTACACAGTAGTAGTATTATGGTGACACATATAGCATGAGTATGGATCAA
GCGGGTAAGGTTGCCAATCCTACTCGTGGTCAGCTGAACAGGGAAAATGA
ATAATTCCTGCCCGCGTTCGCGCCTGAGAGCTTGGTCTCGCGAAACGGAT
TCGGCAGTCCCGTGCCGCGTCAGCCTGCTCATCTCCATACGCAGGCTGAA
TCTGGTGCTTACTCACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATT
TATTTATATAAAGCCGCCATACGTCATCGGGTCAGTCCTGATTTTATCGG
GTAACGCAGTTGCGTATCGATGACATTCACTGCCGAGACTTTGCCGGCAA
AGGGCCAGTAGATCTCAAGGTAGTTCCAAACGGGTGCTGCCTTGGTAGGT
CACCATGGACCAATTAATATGCGCCTCTCTTTCCCACACGCACTATTGGT
ATAAAATGGGCATGTTGAAAGTACTGGCGATAATACGGAAGTATAATATG
AGCATTCATATTGAGTACGCGTAAGATATTTACGAAGTATTGGTTCAGAC
GGTGAAGCTGCGTACTACGAGTACTCGTCGTTTCCCTCCGGGGTGGTGTG
AAGTATTAGTCGACGAATGCACCTTGTGTTGAAGCAACATGCACCATTGC
CCCCAGTGAAGGGGGGGGGGGCGACATTTTTGTCCCCATGCCGTACGCTA
GCTCAACAGAACAGCTTTCGGCCTGCTTTGCACAAATAATAGAGGGTGTA
GTACGAGCACTTTCACCCATCCCGCCTGTTGCCCTTAAGGATCGTCGTTA
TCTCCCTGTTGCGACACAAAAGGCTATTGTTTTCTGCCGTCCGAGCTGTT
CAAAGTTAGAAGTACTTATATGGCCGGTTCTGTGCGTCGCTCAATTCACT
GCTTAAGCATTGAAACATTATTTTTGACGTGTGCCTCAAACCTCTTACGC
CGACTATCACTGCCATGGACAAGGTTGGAAACTTCTGCTGGTCAGCCGAG
CAAGCTCGAAGTGGCGCTGACGGAGATGTCATCTTCGGGGTTGTGTCGCC
CAAGAAATCGCTGCCAGCACATGCCCGTTCGTATGTGGGGCAACGAAACG
TTGGGGCGAATACTGAGGGCACCGTCGAGGGAGGTCGGGAGGGTCGACAA
GACCAAAACCAAAGCATCATCGTGGGTAGCTGTATGACAACGGCGCGCTC
GTCGTTGACCTCTTTCAACAACTCCGGAGGGTCTACAAGGCGATCGAACA
GCTCCACCGTGACATCTTCCGTCTCTCACAAGAGCTCTCGGACATCATCG
TCCCCAAGATCCGCGCGTTGTTGCGAGTGCAGTTGCTCCAGCAGCGGCGA
CAGCCAACAAACGACGCGTACTAATCCCCTGGGCATAACAAGAGGCGTCA
GCGTTGCCAGGCACCTCTCCAACCGCAGCTGCAAGTTGAGTAGCACCAGC
AGTGGCAGCGAGAGAGAGAAAAGATTGAGATCACGATTGATCAGGGACGG
CCAAGCGCCCCTTGAATGGCTGCCTCAGCAAAGGGATCTTGATCCCGTGT
TCAACAAGCATAGAAAATACGATTTGATCGCGCATCGGCGGGGGGCGCAG
GGGCGCGAAGTTACAGGCCGCTTTGGCTCCGTGAACGTCGATTCGGTGAT
GGCGGTATCCCAGCTTAACTCCGAGCTTTCCACGCCTTGGTCGCACGTGC
TTCGTGGCCAAAAATGGTGACAACGGCTGTACGAGTATGGATGGGGGCAT
ATTCTTTTGAGTGGCATGGCTCCAAGACCGATGACGCCCATGACATTGGA
GGGCGTCGGGGGCGCAAAACGACGAGCACCAGGTTGCGGCGGGTCGGACA
AGGTTTCTTTACGAGACAGTCGGCGCGAACCTCACCGCGCGACAAAACAT
CTATCAAACAGAAACATTGACCGGGACAAATCATATCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig68:905205..907544-

>mRNA_F-serratus_M_contig68.17843.1 ID=mRNA_F-serratus_M_contig68.17843.1|Name=mRNA_F-serratus_M_contig68.17843.1|organism=Fucus serratus male|type=CDS|length=2052bp|location=Sequence derived from alignment at F-serratus_M_contig68:905205..907544- (Fucus serratus male)
ATGAGTTTGCAAGGTTCCATCCATAAGTTGTCGGACGGGATCGGGTACGG
TGCCTACGTACCTCCCGCACGGGTGTACTACGACGATCGGAAGCCTACAT
CAAAAAGATTGCGGCGGGCATCAAGTGAGAGAACGAACTACCGGAGACAG
AATGCTACGGCTGGGGTCGATACACACCGCTCTGACATTTCGTTTGGGAA
GACTTTGGATAGCATCAAGACTGGAGAAGAGAGTGACTCCAGAGCAAGAG
AGGCGACCAAATTCTTGACAAGTGGAGAGATGAGTTTGCAAGGTTCCATC
CATAAGTTGTCGGACGGGATCGGGTACGGTGCCTACGTACCTCCCGCACG
GGTGTACTACGACGATCGGAAGCCTACATCAAAAAGATTGCGGCGGGCAT
CAAGTGAGAGAACGAACTACCGGAGACAGAATGCTACGGCTGGGGTCGAT
ACACACCGCTCTGACATTTCGTTTGGGAAGACTTTGGATAGCATCAAGAC
TGGAGAAGAGAGTGACTCCAGAGCAAGAGAGGCGACCAAATTCTTGACAA
GTGGAGAGGTTGGAAACTTCTGCTGGTCAGCCGAGCAAGCTCGAAGTGGC
GCTGACGGAGATGTCATCTTCGGGGTTGTGTCGCCCAAGAAATCGCTGCC
AGCACATGCCCGTTCGTATGTGGGGCAACGAAACGTTGGGGCGAATACTG
AGGGCACCGTCGAGGGAGGTCGGGAGGGTCGACAAGACCAAAACCAAAGC
ATCATCGTGGGTAGCTGTATGACAACGGCGCGCTCGTCGTTGACCTCTTT
CAACAACTCCGGAGGGTCTACAAGGCGATCGAACAGCTCCACCGTGACAT
CTTCCGTCTCTCACAAGAGCTCTCGGACATCATCGTCCCCAAGATCCGCG
CGTTGTTGCGAGTGCAGTTGCTCCAGCAGCGGCGACAGCCAACAAACGAC
GCGTACTAATCCCCTGGGCATAACAAGAGGCGTCAGCGTTGCCAGGCACC
TCTCCAACCGCAGCTGCAAGTTGAGTAGCACCAGCAGTGGCAGCGAGAGA
GAGAAAAGATTGAGATCACGATTGATCAGGGACGGCCAAGCGCCCCTTGA
ATGGCTGCCTCAGCAAAGGGATCTTGATCCCGTGTTCAACAAGCATAGAA
AATACGATTTGATCGCGCATCGGCGGGGGGCGCAGGGGCGCGAAGTTACA
GGCCGCTTTGGCTCCGTGAACGTCGATTCGGTGATGGCGGTATCCCAGCT
TAACTCCGAGCTTTCCACGCCTTGGTCGCACGTGCTTCGTGGCCAAAAAT
GGTGAGTTGGAAACTTCTGCTGGTCAGCCGAGCAAGCTCGAAGTGGCGCT
GACGGAGATGTCATCTTCGGGGTTGTGTCGCCCAAGAAATCGCTGCCAGC
ACATGCCCGTTCGTATGTGGGGCAACGAAACGTTGGGGCGAATACTGAGG
GCACCGTCGAGGGAGGTCGGGAGGGTCGACAAGACCAAAACCAAAGCATC
ATCGTGGGTAGCTGTATGACAACGGCGCGCTCGTCGTTGACCTCTTTCAA
CAACTCCGGAGGGTCTACAAGGCGATCGAACAGCTCCACCGTGACATCTT
CCGTCTCTCACAAGAGCTCTCGGACATCATCGTCCCCAAGATCCGCGCGT
TGTTGCGAGTGCAGTTGCTCCAGCAGCGGCGACAGCCAACAAACGACGCG
TACTAATCCCCTGGGCATAACAAGAGGCGTCAGCGTTGCCAGGCACCTCT
CCAACCGCAGCTGCAAGTTGAGTAGCACCAGCAGTGGCAGCGAGAGAGAG
AAAAGATTGAGATCACGATTGATCAGGGACGGCCAAGCGCCCCTTGAATG
GCTGCCTCAGCAAAGGGATCTTGATCCCGTGTTCAACAAGCATAGAAAAT
ACGATTTGATCGCGCATCGGCGGGGGGCGCAGGGGCGCGAAGTTACAGGC
CGCTTTGGCTCCGTGAACGTCGATTCGGTGATGGCGGTATCCCAGCTTAA
CTCCGAGCTTTCCACGCCTTGGTCGCACGTGCTTCGTGGCCAAAAATGGT
GA
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