prot_F-serratus_M_contig68.17839.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig68.17839.1
Unique Nameprot_F-serratus_M_contig68.17839.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length988
Homology
BLAST of mRNA_F-serratus_M_contig68.17839.1 vs. uniprot
Match: A0A6H5JE04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE04_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 5.410e-57
Identity = 297/860 (34.53%), Postives = 378/860 (43.95%), Query Frame = 0
Query:   12 GASQTKVIISNLKRDVDEEALAALCRQLGRVTNFRLA--PGHSPDSPITAVVEYATPEEARGVVDHVDGRLILGQPVTAAVAVPGASYRQSSTSTLPPRNPPPHGVNNSAPTSTGQARAPYPSVMEDRNVDFPQGKDKGTPPYARYPRPHVNDPPRQFQPPPYAAARPWEQDQRAPEHAPHQPPTGFGEDFTHGQKQPP----WAGPRRRDKLAG---PGAPKFNDD---VRHNPRAPAQQWQGHDEIARNSESLRWEREGERNHYPP-QRASNVEHP--EFH------------------SHSFSAWAPGTEARPPLPVSNGVGTXXXXXXXPQRVPGVTADSSGPPAVAPHDPRGGNGYVDRDAEDASVGKRRRTSPPNDG-RGPPGPGHSTSAWREGPRHPAPPPESAIGGSTSARDPAFDREVMRQAALLVAERELLTRENPKK-ETNAAKVDRVRHDEPVLQHYNSRQARGDTTSGKNTSMGHRRSRSLENIDRRKREGLGSRERKQRDGRDGDAHGGRNSGKIFDHQTATAVGGGNWREDSKRSRRDSSPHRVGHGRVDDRAXXXXXXXXXXXRRAPSDRKYLEDNSGISGSKYRDSDTPGRRQDDGWNNRDRRDEHRPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDEGHTRRPGDVDGSREGAVVPSIHKNWD-QSFADTGWYVHVGGISFSTTFTALAKRFAAFGDVNGFKVIFNNVTCRAADDGDRGHDHASKKDLSKAAVVTASTGFAFISFDDEEGMERAIECMDNQVLDGHILKVSRGRMPTESFNSKTRL---------PALKPDRRWPPQDGSHHFHS------PHQDRGADRRPIP 820
            G + T+VII NLKRDVD+EAL AL  QLG VTNFRL   PG  P SP T VVEYA+ E+A  VV HV G+LILG+PVTA VA PG     S+   LP   PP                                    G     RYP P V   P   +   +                       +G+  +H Q+Q      W   R   + +G   P AP++  +     +  R    Q  GH E     ES  WER  +RN +P  QRA   + P   FH                  +H  SA+  G + R P                P+R    +A S G P  +  D     GY D   +D   G  RR  PPN    G P  G + +AW +  ++  PPP S  G         F++EV++ AALLVAERE+   E  K+ + N +  D      P   +   R+++   +  +  SMG       E  D RK+    SR    +D  DGD                        R  SK++RRDSS  R  HG V  RA            R    R   E   G  G      D   R+++D  +    +D+HR                     XXXXXXXXXXXXXXX ++  + +     GS            W+ Q  A  G+YVHVGG+SFSTTFT LAKRFAAFGDVNGFKVIFN V+C A +   R     SK++++KAAVVTAS+GFAFISFD E GME+A+ECMD Q LDG+ILKV+RG       +S  R          P   P RRW    G+HH H       P+Q R  + RP P
Sbjct:   21 GPANTRVIIGNLKRDVDKEALKALLCQLGHVTNFRLQQPPGIDPASPATGVVEYASAEDASRVVAHVHGKLILGRPVTAWVAAPG-----STAPPLPQGGPPSTSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNG----GRYP-PAVGHNPNSHEDARWERPXXXXXXXXXXXXXXXXXQDTYGDGLSHNQRQQQQHQSWHSGRPMPQQSGANVPIAPRYGGEGGSAHYAERHWQDQRHGHSEA---DESAAWERP-DRNQFPAAQRAPMRQQPPPSFHRPTGPQTSEWYDDADSQVAHGNSAYDDGGQRRGPR----------GRAMMPRR---ASAGSVGVPPRSSDD-----GYGD---DDVPAGAMRRLPPPNSAPHGVPLSGRA-AAWTDDAQYTMPPPISIKGED-------FEKEVVKAAALLVAEREMAREEARKQGKQNWSGAD------PTPGYEGPRKSKKARSGSR--SMG-------EETDERKKREPSSR----KDENDGDH-----------------------RPKSKKTRRDSSGDR--HGSVGKRAD----------ERKGKARTREESKGGPQG------DDRDRKREDS-SRTSHKDKHRX--------------------XXXXXXXXXXXXXXXXNDPDSSKSSPKQGSSSWDRKGFNSSPWENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKR---KGSKEEVTKAAVVTASSGFAFISFDKERGMEKAVECMDGQKLDGNILKVTRGGRLQGRPHSGGRAFRAQAEPTPPNQGPPRRWQESKGNHHKHEHEEEYRPNQARHTNPRPEP 753          
BLAST of mRNA_F-serratus_M_contig68.17839.1 vs. uniprot
Match: D8LJZ2_ECTSI (Polyphosphate kinase 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.140e-36
Identity = 94/173 (54.34%), Postives = 114/173 (65.90%), Query Frame = 0
Query:  664 WD-QSFADTGWYVHVGGISFSTTFTALAKRFAAFGDVNGFKVIFNNVTCRAADDGDRGHDHASKKDLSKAAVVTASTGFAFISFDDEEGMERAIECMDNQVLDGHILKVSRGRMPTESFNSKTRL---------PALKPDRRWPPQDGSHHFHS------PHQDRGADRRPIP 820
            W+ Q  A  G+YVHVGG+SFSTTFT LAKRFAAFGDVNGFKVIFN V+C A +   R     SK++++KAAVVTAS+GFAFISFD+E GME+A+ECMD Q LDG+ILKV+RG       +S  R          P   P RRW    G+H+ H       P+Q R A+ RP P
Sbjct:  257 WENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETSKR---KGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKVTRGGRLQGRPHSGGRAFRAQAEPTPPNQGPPRRWQESKGNHNKHEHDQEYHPNQGRHANPRPEP 426          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig68.17839.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE04_9PHAE5.410e-5734.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ2_ECTSI1.140e-3654.34Polyphosphate kinase 2 family protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..89
e-value: 1.1E-5
score: 34.8
coord: 674..772
e-value: 7.9E-12
score: 55.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 737..769
e-value: 2.6E-6
score: 27.1
coord: 18..86
e-value: 3.6E-8
score: 33.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 16..93
score: 10.838
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 673..776
score: 12.731
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 611..784
e-value: 3.3E-14
score: 54.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 11..105
e-value: 3.2E-11
score: 45.2
NoneNo IPR availablePANTHERPTHR10352EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Gcoord: 11..143
coord: 623..827
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 13..114
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 667..773

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig68contigF-serratus_M_contig68:834545..839865 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig68.17839.1mRNA_F-serratus_M_contig68.17839.1Fucus serratus malemRNAF-serratus_M_contig68 834461..840999 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig68.17839.1 ID=prot_F-serratus_M_contig68.17839.1|Name=mRNA_F-serratus_M_contig68.17839.1|organism=Fucus serratus male|type=polypeptide|length=988bp
MTQRGDKPMVGGASQTKVIISNLKRDVDEEALAALCRQLGRVTNFRLAPG
HSPDSPITAVVEYATPEEARGVVDHVDGRLILGQPVTAAVAVPGASYRQS
STSTLPPRNPPPHGVNNSAPTSTGQARAPYPSVMEDRNVDFPQGKDKGTP
PYARYPRPHVNDPPRQFQPPPYAAARPWEQDQRAPEHAPHQPPTGFGEDF
THGQKQPPWAGPRRRDKLAGPGAPKFNDDVRHNPRAPAQQWQGHDEIARN
SESLRWEREGERNHYPPQRASNVEHPEFHSHSFSAWAPGTEARPPLPVSN
GVGTGQRPPLPPQRVPGVTADSSGPPAVAPHDPRGGNGYVDRDAEDASVG
KRRRTSPPNDGRGPPGPGHSTSAWREGPRHPAPPPESAIGGSTSARDPAF
DREVMRQAALLVAERELLTRENPKKETNAAKVDRVRHDEPVLQHYNSRQA
RGDTTSGKNTSMGHRRSRSLENIDRRKREGLGSRERKQRDGRDGDAHGGR
NSGKIFDHQTATAVGGGNWREDSKRSRRDSSPHRVGHGRVDDRAGKGRAE
EKANERRAPSDRKYLEDNSGISGSKYRDSDTPGRRQDDGWNNRDRRDEHR
PRRDSRGRTSNSSRERDTVAPRAEKIWERGNRQGPLKDEGHTRRPGDVDG
SREGAVVPSIHKNWDQSFADTGWYVHVGGISFSTTFTALAKRFAAFGDVN
GFKVIFNNVTCRAADDGDRGHDHASKKDLSKAAVVTASTGFAFISFDDEE
GMERAIECMDNQVLDGHILKVSRGRMPTESFNSKTRLPALKPDRRWPPQD
GSHHFHSPHQDRGADRRPIPAINNPAPFAKKSWPGPGSSFAAPGVASSHR
GAGAGGGREGVESLASSANTMSTRPAGTSRAPTSGPSRVEASNKIGDRRD
PRDRDAAIRSRHGSNDNAFGGYGVDAGARGTGKAKRGARGGGKGFRDRVR
GGGDGSSKDVDKRVAKKRANDETRPSEVQADRHVPGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf