mRNA_F-serratus_M_contig68.17826.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig68.17826.1
Unique Name	mRNA_F-serratus_M_contig68.17826.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig68.17826.1 vs. uniprot
Match: A0A6H5L995_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L995_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 1.130e-78
Identity = 156/271 (57.56%), Postives = 185/271 (68.27%), Query Frame = 3

Query:  216 SGGCVLALLLALIPSPSNSFLSSGALESTAVQRLHQRVEARNRPFMKANKHDATLSTAASAPSVSRKSFIGSGALATMWGFAAVATSPFASDAAQFAGVEVRGIDVAEV--------LHPGAGGTG-KASKPLRDCLLNVERVRISTKQLEDTLTEEGPPPGLTSLVKGLVKNYKLDESLRQGALYIDSQGDRNAAASAGREALEYLAQTIEYFPVELDERTGTPKRPSAEVLEFTVNALGATRGKLDFYLSKVPSNELREARAEINAESG 1001
            SG   LA+LL L  SPS +FL   A    A+   HQ   A +   +     D   S + S+   SR+ F+  GA+A +   AA+   P  S A        +GID++EV        +H GAG +G KA+KPLRDCLLNVERVRISTKQLEDTLT +G PPGLT LVKGL+KNYKLDESL+QGA YI+S GDRN AASAGREALEYLAQT EYFPVE+D+RTG PK+ S+E LEFTVNAL ATR KLD +LSKVPS+ L EARAEI +E G
Sbjct:    4 SGCRALAVLLTLYSSPSGAFL---APTKAALGCFHQHRSASSPTCLSMTARDELRSGSISS---SRRGFLEGGAVALLASVAAIGL-PEPSVA--------KGIDLSEVXXXXXXXXMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDESLQQGAKYIESSGDRNTAASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSEGG 259

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BLAST of mRNA_F-serratus_M_contig68.17826.1 vs. uniprot
Match: A0A7S2XY69_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY69_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.760e-19
Identity = 61/157 (38.85%), Postives = 92/157 (58.60%), Query Frame = 3

Query:  561 GTGKASKPLRDCLLNVERVRISTKQLEDTLTEEGPPPGLTSLVKGLVKNYKLDESLRQGALYIDSQGDRNAAASAGREALEYLAQTIEYFPVELDERTGTPKRPSA-----EVLEFTVNALGATRGKLDFYLSKVPSN---ELREARAEINAESGGS 1007
            G  K +KPL +CL +V  V+++TKQLED +T       + +  + L++NYKL+E+LRQG  Y++S  +R  A    +EALE L    EYFP   D  TG  + PS+     E ++F+V AL +T   L+ YLS +P     +++++ AE  AES  S
Sbjct:  115 GKKKPTKPLEECLESVALVQLTTKQLEDDITNGQEIGDIPAQAQLLLRNYKLEENLRQGVQYLESNAERVEATKYAKEALEDLILITEYFPESYDNFTGK-RLPSSLTLTPEKIKFSVKALSSTTKALEGYLSTMPVEMVAKVKQSIAEDMAESEAS 270

[Close]

BLAST of mRNA_F-serratus_M_contig68.17826.1 vs. uniprot
Match: A0A7S3TS97_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TS97_9SPIT)

HSP 1 Score: 56.2 bits (134), Expect = 3.270e-5
Identity = 40/147 (27.21%), Postives = 73/147 (49.66%), Query Frame = 3

Query:  570 KASKPLRDCLLNVERVRISTKQLEDTLT----EEGPPPGLTSLVKGLVKNYKLDESLRQGALYIDSQGDRNAAASAGREALEYLAQTIEYFPVELDERTGTPKRPSAEVLEFTVNALGATRGKLDFYLSKVPSNELREARAEINAES 998
            K+   L++ L  + RV+ +T Q E  ++    ++     +   +  ++ NYKL + +   + Y     +   A+ AG+EA++ L    EYF  EL     T  + S     F V+A+ ATR KLD +L  +P+  ++ AR ++  E+
Sbjct:   98 KSVNELQEALYLISRVQEATVQQERLVSTGKFKDMQRNSIKMALNMMLNNYKLGDQIVVASAYASPADNVFKASQAGKEAIDVLETAQEYFAKELKVSGLTDTQRS-----FIVDAMTATRTKLDNFLKFMPAETVQAARKQVEDEN 239

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig68.17826.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig68.17826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5L995_9PHAE	1.130e-78	57.56	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S2XY69_9STRA	1.760e-19	38.85	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S3TS97_9SPIT	3.270e-5	27.21	Hypothetical protein n=1 Tax=Strombidinopsis acumi...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig68	contig	F-serratus_M_contig68:307293..310897 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	61.2
Seed ortholog evalue	8.4e-07
Seed eggNOG ortholog	159749.K0R908
Hectar predicted targeting category	signal peptide
EggNOG OGs	2C1G4@1,2S3K1@2759,2XCB1@2836
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-06_007080.1
Best tax level	Bacillariophyta
Best eggNOG OG	NA\|NA\|NA
Exons	3
Model size	1342
Cds size	810
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig68.17826.1	prot_F-serratus_M_contig68.17826.1	Fucus serratus male	polypeptide	F-serratus_M_contig68 307493..310565 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932077.0659835-UTR-F-serratus_M_contig68:307292..307492	1622932077.0659835-UTR-F-serratus_M_contig68:307292..307492	Fucus serratus male	UTR	F-serratus_M_contig68 307293..307492 +
1690964135.340145-UTR-F-serratus_M_contig68:307292..307492	1690964135.340145-UTR-F-serratus_M_contig68:307292..307492	Fucus serratus male	UTR	F-serratus_M_contig68 307293..307492 +
1622932077.1401105-UTR-F-serratus_M_contig68:310565..310897	1622932077.1401105-UTR-F-serratus_M_contig68:310565..310897	Fucus serratus male	UTR	F-serratus_M_contig68 310566..310897 +
1690964135.3875155-UTR-F-serratus_M_contig68:310565..310897	1690964135.3875155-UTR-F-serratus_M_contig68:310565..310897	Fucus serratus male	UTR	F-serratus_M_contig68 310566..310897 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932077.0853581-CDS-F-serratus_M_contig68:307492..307927	1622932077.0853581-CDS-F-serratus_M_contig68:307492..307927	Fucus serratus male	CDS	F-serratus_M_contig68 307493..307927 +
1690964135.3581414-CDS-F-serratus_M_contig68:307492..307927	1690964135.3581414-CDS-F-serratus_M_contig68:307492..307927	Fucus serratus male	CDS	F-serratus_M_contig68 307493..307927 +
1622932077.101653-CDS-F-serratus_M_contig68:308799..309014	1622932077.101653-CDS-F-serratus_M_contig68:308799..309014	Fucus serratus male	CDS	F-serratus_M_contig68 308800..309014 +
1690964135.3677638-CDS-F-serratus_M_contig68:308799..309014	1690964135.3677638-CDS-F-serratus_M_contig68:308799..309014	Fucus serratus male	CDS	F-serratus_M_contig68 308800..309014 +
1622932077.119694-CDS-F-serratus_M_contig68:310405..310565	1622932077.119694-CDS-F-serratus_M_contig68:310405..310565	Fucus serratus male	CDS	F-serratus_M_contig68 310406..310565 +
1690964135.3774962-CDS-F-serratus_M_contig68:310405..310565	1690964135.3774962-CDS-F-serratus_M_contig68:310405..310565	Fucus serratus male	CDS	F-serratus_M_contig68 310406..310565 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig68:307293..310897+
coding sequence from alignment at F-serratus_M_contig68:307293..310897+

protein sequence of mRNA_F-serratus_M_contig68.17826.1

>prot_F-serratus_M_contig68.17826.1 ID=prot_F-serratus_M_contig68.17826.1|Name=mRNA_F-serratus_M_contig68.17826.1|organism=Fucus serratus male|type=polypeptide|length=270bp
MYTKHSGGCVLALLLALIPSPSNSFLSSGALESTAVQRLHQRVEARNRPF
MKANKHDATLSTAASAPSVSRKSFIGSGALATMWGFAAVATSPFASDAAQ
FAGVEVRGIDVAEVLHPGAGGTGKASKPLRDCLLNVERVRISTKQLEDTL
TEEGPPPGLTSLVKGLVKNYKLDESLRQGALYIDSQGDRNAAASAGREAL
EYLAQTIEYFPVELDERTGTPKRPSAEVLEFTVNALGATRGKLDFYLSKV
PSNELREARAEINAESGGS*

mRNA from alignment at F-serratus_M_contig68:307293..310897+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig68.17826.1 ID=mRNA_F-serratus_M_contig68.17826.1|Name=mRNA_F-serratus_M_contig68.17826.1|organism=Fucus serratus male|type=mRNA|length=3605bp|location=Sequence derived from alignment at F-serratus_M_contig68:307293..310897+ (Fucus serratus male)
GCTACGGCTTCACTCCTTGCACTACCTCTAGTACACTACATCGCTAAAAT
TACACTAGCGCGCCAGTCATCATCACTGGCCATAGGTGCGAGACGCTGGG
GATTGGGCTGTGCTCTTCATTTGGATTATTGATTAATATTTCAAGTCACA
GAAAAGTGAACCTTCTGACGTTGCACATCTCCGATCTGGCGGTTGGTACC
ATGTACACTAAGCACTCCGGGGGTTGCGTACTCGCGCTCCTTTTGGCCTT
GATACCATCGCCGTCGAACTCATTTCTATCGTCGGGAGCTTTGGAATCTA
CGGCGGTGCAGCGTCTGCACCAGCGAGTAGAAGCTCGAAATCGTCCGTTC
ATGAAGGCAAATAAACATGACGCGACACTGTCAACAGCTGCGTCCGCACC
CTCTGTTAGTAGAAAATCATTCATCGGAAGTGGGGCTTTGGCGACGATGT
GGGGCTTCGCAGCCGTGGCCACTTCGCCCTTTGCTTCCGATGCAGCGCAG
TTCGCTGGAGTCGAGGTACGAGGGATCGACGTGGCTGAGGTTCTGCACCC
GGGGGCCGGGGGCACCGGGAAAGCGTCGAAGCCGTTGCGCGACTGCTTGC
TGAACGTTGAGCGGGTTCGTATCTCCACGAAACAGGTAACTCCATCCTTA
TCTTACCAGGGCGGTGCGATTATCACGGCCAGTGCGGACTTAGTGTGTAT
TTTCATCTCTAGCTCCCGCTGAACTCTGCTGGCGTGTTAGCTCAGAGTAC
CAGGAGATTTCATGGGGTCGATTCTCCCCCCTTCCGAGAGGGAGAATACG
CGTTAGAACTTCTCTACTTTGTACGAGTAGGAGCGTATGATAGCTGACAG
GATACCACTGAGTTCTAAATGTAGTACCGGGATACAGTAGCCGTAGCACA
CCCTGGGTATAGAAATGCTTTCTCGACAGTTATGCCAGGATGTAGTCCTT
GTGACTGTCAATAGTAAGTCGGCAACGTAATGACTCTCAGTATAATTAGC
TGCGATAACAAAGCGACTTGTACGGCATTTTGCTTTTCCGTTGCGTGGCA
CTTACTTACCTGTTGTATAATGGTGCTGTACTATCTCTTGAAAAACATTA
TATCGTGGTACGCATTCCGACACAGACAACAGTGTACCCATGACACCCAG
TCGTCCAATTCTAAACATACTGGCGACAAGACTGTTGGCACCCCCGCCCA
GCATTCACAATTACCTCAGAGCGACTTGACCTGGCGCTACCTTTTGTACG
ATAACGCCACCATGTTTCAACCACCATGGAGATTCTGGCGTCAGAAGAAT
GCCAGTCCCGTGTCTGTTCATATCCATACAATCTGACGTGTCTTTTCACA
AAGTAATCGTTTATCCGTTTACAACCTCTACCCCGCCCCCCCCACACACA
CACTCGCGGAAATGCTAAAGTTCTTCGTTGCTACCACCACCAACGAGCGC
AGCTTCCCTCTAATCCGTTGGCCTATCGAAATCTCCCCAACCCGTTGGAG
CACGCAGTTGGAGGATACTTTGACGGAGGAAGGCCCCCCTCCTGGCCTGA
CTAGCCTCGTGAAGGGGCTAGTCAAGAATTACAAGCTTGACGAGAGCCTC
CGGCAAGGGGCGTTGTACATCGATTCCCAGGGAGACAGGAACGCCGCCGC
GTCGGCAGGGCGGGAGGCGTTGGAGTACCTTGCGCAGACAATAGAGTACT
TCCCGGTGGAGTTGGACGAGAGGTGCGCATCTCATGGGGAGGGGGCACTG
AGCTATCGGTGGTTAGGCGGAAACAGGCGATCGTGGCAAGATATTTCATT
ATGTCCCTGTTGGTGACCTCAAGCCTGTACATATCGTCGCTTCGAGAATG
CTCTGTCTTCTATTCTTGCGGAACTCTGACCATAGCCAAGCACCCCCAGC
CCGCCTTCTATCAACATGCCCACCTCATACCAATAGTGGGTGTGGGACAA
GAGAGGCGCACATTAATTGGTCTATGGTGACCTGAAAAATGTCAGCACCC
GTTACCGGAACTACCCTGAGGACTACTGGCCCTATACCGGCGGACTCTCG
GCAGTGAACGCCTTTGATTCGCACTCTAATTGCGTGACCCGATAAATTCG
GGACTGACCCATTGGCGTATGGCGGTTCAAAAAATGATTGGGCGCCGCCG
CGGAAATCGGGAGGAATCCCGTGAGTAAGCACCCGATTCAGCCTGAGTAT
GGAGATGAGTAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTCGCGAG
GCCAAATTCTCAGGCACATACGGGGACAGGGAAATATTCATTTTCCCTGT
TCAGCTGACCACGAGCAGGTTTGGCAACCTTACCCGATTGATCCATACTC
TGCTATATGTGATGATCATACATACATACATACATACCCCTATCAGGCGC
TTTTAAAAAAAATACCGTTTTTGCTGTAATCCCGACGTATCCCGACATTA
CCGGAACACCGTCAAATGTCCTCCTTTATATAACAATTTTGGTCTCCAGA
ATGCCTTGTTATTTTTCTCCTTTTTTTTCCAAAAAGTTTTGTCGTTTATT
TAGAGGGGAACTCAAGAGGCGCGGAAAATATGCGATTTGCCTTTTTGACA
TCTATTTAATAGCCATATTTAACGAGATAGACGACGTGGTGGCGGTGGTA
GACGGCCTTTTGTTTTGATCGCACCGGCGTCTTAAAATAGTATTCCCGTT
TCTGCTCTCACATTTGTCAAATGCCAAGAATGGAAGAAAAAAAAAAGAAA
AAAACATCCTCATGGAGAGGGGGGGGAGTGGGGAGTGGGGAGCGGAGATC
AGACAAACGCAGAAGCACTAGCTAATATCTTATGATTATCGTCCTTTCCA
TGTTGAGACTCCGTCCGATTCTTAGGTTTGATACGTCGCTGGATCAGAGC
GCGAACCGCGCTTCCCGCCGTGTTTCGATAAACCGCACAGTACCTATTAT
ACACTGTGTAGAAAACACGTGCGATGTGTCCGCGGACATCCTCCGCGAGA
AAACGGTGGACACGCTCTCTGTCCTCAGAACCCATCATCTTCCGCATTAA
TGTTCTCCCGACCAACCTCTCTTTATCGCTTTTGCTTCGAATCCGCGTGT
GCTGTGTCTGTAGGACCGGGACGCCCAAAAGGCCGAGCGCCGAGGTGCTG
GAGTTTACGGTCAACGCGCTAGGTGCCACCAGGGGGAAGCTTGACTTCTA
CTTATCCAAGGTGCCCTCGAACGAGCTGCGGGAAGCACGAGCTGAGATCA
ACGCGGAGAGCGGTGGCAGCTGACGCATCGACATTGCGTTTGCCCCGGCA
GAGATGCACTGTCTGTGGTGGCCGGATGGTCATCCACCTCGAGACCCATT
TTTGCCGCTTGTCCTGTTTCTACTGAGTAGAGGTATTTTGAATGGTTGGT
TGATGGGAATGACTTCTCAAAGAAGAAATTGCTGGGTCATGGGTTACTCG
GGGGAAAAACGCCTGCTGCCGCTTTTGATCTTGCCGTGGCTGAATGTATT
GGTTCCACCTAAGTGTCGAACGTAATGAAGACGTTACTCCGGTTGAGAAA
GTTTTGCGCCCTGCCCTCAAACCTTGCTTGAAAAACTCGAAATAATACTG
GCCGC

Coding sequence (CDS) from alignment at F-serratus_M_contig68:307293..310897+

>mRNA_F-serratus_M_contig68.17826.1 ID=mRNA_F-serratus_M_contig68.17826.1|Name=mRNA_F-serratus_M_contig68.17826.1|organism=Fucus serratus male|type=CDS|length=1620bp|location=Sequence derived from alignment at F-serratus_M_contig68:307293..310897+ (Fucus serratus male)
ATGTACACTAAGCACTCCGGGGGTTGCGTACTCGCGCTCCTTTTGGCCTT
GATACCATCGCCGTCGAACTCATTTCTATCGTCGGGAGCTTTGGAATCTA
CGGCGGTGCAGCGTCTGCACCAGCGAGTAGAAGCTCGAAATCGTCCGTTC
ATGAAGGCAAATAAACATGACGCGACACTGTCAACAGCTGCGTCCGCACC
CTCTGTTAGTAGAAAATCATTCATCGGAAGTGGGGCTTTGGCGACGATGT
GGGGCTTCGCAGCCGTGGCCACTTCGCCCTTTGCTTCCGATGCAGCGCAG
TTCGCTGGAGTCGAGGTACGAGGGATCGACGTGGCTGAGGTTCTGCACCC
GGGGGCCGGGGGCACCGGGAAAGCGTCGAAGCCGTTGCGCGACTGCTTGC
TGAACGTTGAGCGGGTTCGTATCTCCACGAAACAGATGTACACTAAGCAC
TCCGGGGGTTGCGTACTCGCGCTCCTTTTGGCCTTGATACCATCGCCGTC
GAACTCATTTCTATCGTCGGGAGCTTTGGAATCTACGGCGGTGCAGCGTC
TGCACCAGCGAGTAGAAGCTCGAAATCGTCCGTTCATGAAGGCAAATAAA
CATGACGCGACACTGTCAACAGCTGCGTCCGCACCCTCTGTTAGTAGAAA
ATCATTCATCGGAAGTGGGGCTTTGGCGACGATGTGGGGCTTCGCAGCCG
TGGCCACTTCGCCCTTTGCTTCCGATGCAGCGCAGTTCGCTGGAGTCGAG
GTACGAGGGATCGACGTGGCTGAGGTTCTGCACCCGGGGGCCGGGGGCAC
CGGGAAAGCGTCGAAGCCGTTGCGCGACTGCTTGCTGAACGTTGAGCGGG
TTCGTATCTCCACGAAACAGTTGGAGGATACTTTGACGGAGGAAGGCCCC
CCTCCTGGCCTGACTAGCCTCGTGAAGGGGCTAGTCAAGAATTACAAGCT
TGACGAGAGCCTCCGGCAAGGGGCGTTGTACATCGATTCCCAGGGAGACA
GGAACGCCGCCGCGTCGGCAGGGCGGGAGGCGTTGGAGTACCTTGCGCAG
ACAATAGAGTACTTCCCGGTGGAGTTGGACGAGAGTTGGAGGATACTTTG
ACGGAGGAAGGCCCCCCTCCTGGCCTGACTAGCCTCGTGAAGGGGCTAGT
CAAGAATTACAAGCTTGACGAGAGCCTCCGGCAAGGGGCGTTGTACATCG
ATTCCCAGGGAGACAGGAACGCCGCCGCGTCGGCAGGGCGGGAGGCGTTG
GAGTACCTTGCGCAGACAATAGAGTACTTCCCGGTGGAGTTGGACGAGAG
GACCGGGACGCCCAAAAGGCCGAGCGCCGAGGTGCTGGAGTTTACGGTCA
ACGCGCTAGGTGCCACCAGGGGGAAGCTTGACTTCTACTTATCCAAGGTG
CCCTCGAACGAGCTGCGGGAAGCACGAGCTGAGATCAACGCGGAGAGCGG
TGGCAGCTGAGACCGGGACGCCCAAAAGGCCGAGCGCCGAGGTGCTGGAG
TTTACGGTCAACGCGCTAGGTGCCACCAGGGGGAAGCTTGACTTCTACTT
ATCCAAGGTGCCCTCGAACGAGCTGCGGGAAGCACGAGCTGAGATCAACG
CGGAGAGCGGTGGCAGCTGA