mRNA_F-serratus_M_contig68.17819.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig68.17819.1
Unique NamemRNA_F-serratus_M_contig68.17819.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A6H5KZ28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ28_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.080e-37
Identity = 75/142 (52.82%), Postives = 95/142 (66.90%), Query Frame = 1
Query:    4 SSYYDAVVTVNVKRCEEVQPSVHEREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGK-VQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFELADG*R 426
            SSYY++ VTV+V  C EV P V++REV ++VLG  FCVAKS+VV+H   C E  K G +GLGQ+F + +ILPRFELL AGR+   ++  SG     G E   V   + G  WRLYDL+S H+SCRI+EEF  DLF L  G R
Sbjct:  191 SSYYNSPVTVDVIFCTEVGPGVYDREVEISVLGHVFCVAKSLVVVHDPACAEAVKTGRVGLGQLFHSLNILPRFELLNAGRRVGRSARFSGNSDTIGGEKEGVCTRDDGGFWRLYDLRSGHVSCRIYEEFPPDLFGLEQGKR 332          
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A835YNG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.950e-26
Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = 1
Query:    4 SSYYDAVVTVNVKRCEEVQPSVHEREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
            SSYY+A V V++ +C+     V+ER VTL+V G +FC AKS+VVLHS  C E  +   +G+GQ+F+  D LP F LL  G+     S         ++  + P      +WR+YDL+S+HLSCRI E+FA +LF++
Sbjct:  142 SSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPS-------SQTDTGASPTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 270          
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: D8LJX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX8_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.580e-19
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  133 VLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASG--GSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFELADG*R 426
            V+H + C E  K G +GLGQ+F + +ILPRFELL AGR+   ++   G+   + G +       EGG  WRLYDL+S H+SCRI+EEF  DLF L  G R
Sbjct:   18 VVHDAACAEAVKTGRVGLGQLFHSLNILPRFELLNAGRRVGRSARFPGNSDTIGGEKEGGCTGEEGG-FWRLYDLRSGHVSCRIYEEFPPDLFGLDQGKR 116          
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A7S2L0C0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L0C0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-18
Identity = 52/143 (36.36%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    4 SSYYDAVVTVNVKRCEE-------VQPSVHEREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
            SS+YD+ VTV V  C E           V +R V L V  + FC A S + +H  +C E  + G++GLGQ+F+  D LP F+LL AGR                        E G +WRLY+LKS+ L+C I E+F+ D++ +
Sbjct:  181 SSFYDSPVTVVVNSCVERPRLCASENAGVWDRSVDLKVYNKRFCRATSEITVHEPMCAELVRSGEVGLGQLFRYLDKLPTFDLLDAGR-----------------------TESGGMWRLYELKSKELTCSIFEDFSPDVWSM 300          
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: B7G8T3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8T3_PHATC)

HSP 1 Score: 86.7 bits (213), Expect = 1.020e-15
Identity = 54/163 (33.13%), Postives = 76/163 (46.63%), Query Frame = 1
Query:    4 SSYYDAVVTVNVKRCEEVQPSVH---------------------EREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAG------RKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
            SSYYDA V V V  C +   +V                      +R V LTV G+ FC A SV+ ++  +C+   + G +GLGQ+F+  D+LP F L  AG        AT+  G  GG+ +G              WR Y L    +SCRIHE+F   +++L
Sbjct:  204 SSYYDAPVQVVVDSCRKRSSNVSSNVQIMSRPIQLSGAATAQVWDRVVHLTVFGKTFCTATSVITVYDELCQSLVESGQVGLGQLFRYLDLLPEFTLHNAGVHQTGKTMATKKVGRGGGRGRGE-----------GFWRDYTLSCAEISCRIHEDFQQGIWDL 355          
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A7S2AJ61_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AJ61_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.170e-14
Identity = 50/140 (35.71%), Postives = 70/140 (50.00%), Query Frame = 1
Query:    4 SSYYDAVVTVNVKRCEEVQPSVHEREVTLTV--LGRE--FCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
            SSYY+  V V     +E+  SV +REV ++V   G    FCVA S +V+ +   R+    G +G+GQ+F  + ILP+F+LL AGR                       ++G   WR Y+L S  + CRI E F  D FEL
Sbjct:   10 SSYYNCEVMVKNIYTQELTESVFDREVEISVNPTGEPVVFCVAYSTIVVKNETIRDAINSGTVGVGQVFSHYHILPKFQLLDAGRT----------------------MDG--FWRFYELDSEFIRCRIRENFRADSFEL 125          
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A7S0UIX0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UIX0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.230e-12
Identity = 49/149 (32.89%), Postives = 71/149 (47.65%), Query Frame = 1
Query:    4 SSYYDAVVTVNVKRCEEVQP------------SVHEREVTLTVLGRE-FCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEFATDLFEL 411
            SSYYDA V V +  C+  +P            ++ +R V L +   + FC A SVV +HS    +  + G +G+GQ+F+ F+ILP F LL AG                       P E G  WR Y L+S  ++C I E F  +++EL
Sbjct:  191 SSYYDAPVVVEMVHCKRQKPPKINSSSSVGATAMWDRRVLLKIFDDQTFCTADSVVEVHSREVEDLVESGQVGIGQLFRHFNILPEFTLLAAG-----------------------PTEDGGFWRNYTLESDLVTCSIREVFCKNVWEL 316          
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Match: A0A4P9W9T6_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W9T6_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 2.770e-7
Identity = 39/137 (28.47%), Postives = 63/137 (45.99%), Query Frame = 1
Query:    4 SSYYDAVVTVNV---KRCEEVQ-----PSVHEREVTLTVLGREFCVAKSVVVLHSSICRETFKKGDLGLGQMFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRLYDLKSRHLSCRIHEEF 390
            S++++A VTV +    R +E        +V  REV +       C AKS + +         ++  +G+GQ+F+  ++LP FEL+RAG+                             WR Y+L+S  ++CRIHEEF
Sbjct:   32 SAFWNATVTVEIITNARLDETAVTDPLKAVFRREVNIRCRDNVVCNAKSTITITDPEHLRLIEEELVGIGQLFRYLNVLPEFELVRAGQTPE------------------------TFWRDYELRSAGIACRIHEEF 144          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig68.17819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KZ28_9PHAE2.080e-3752.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNG4_9STRA1.950e-2642.65Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LJX8_ECTSI1.580e-1948.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2L0C0_9STRA1.400e-1836.36Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B7G8T3_PHATC1.020e-1533.13Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2AJ61_9STRA2.170e-1435.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0UIX0_9STRA1.230e-1232.89Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A4P9W9T6_9FUNG2.770e-728.47Uncharacterized protein (Fragment) n=1 Tax=Blyttio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig68contigF-serratus_M_contig68:72470..73748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size882
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig68.17819.1prot_F-serratus_M_contig68.17819.1Fucus serratus malepolypeptideF-serratus_M_contig68 73059..73289 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932075.7317722-UTR-F-serratus_M_contig68:72469..726011622932075.7317722-UTR-F-serratus_M_contig68:72469..72601Fucus serratus maleUTRF-serratus_M_contig68 72470..72601 +
1690964134.512779-UTR-F-serratus_M_contig68:72469..726011690964134.512779-UTR-F-serratus_M_contig68:72469..72601Fucus serratus maleUTRF-serratus_M_contig68 72470..72601 +
1622932075.7470644-UTR-F-serratus_M_contig68:72998..730581622932075.7470644-UTR-F-serratus_M_contig68:72998..73058Fucus serratus maleUTRF-serratus_M_contig68 72999..73058 +
1690964134.5259244-UTR-F-serratus_M_contig68:72998..730581690964134.5259244-UTR-F-serratus_M_contig68:72998..73058Fucus serratus maleUTRF-serratus_M_contig68 72999..73058 +
1622932075.7783508-UTR-F-serratus_M_contig68:73289..737481622932075.7783508-UTR-F-serratus_M_contig68:73289..73748Fucus serratus maleUTRF-serratus_M_contig68 73290..73748 +
1690964134.548566-UTR-F-serratus_M_contig68:73289..737481690964134.548566-UTR-F-serratus_M_contig68:73289..73748Fucus serratus maleUTRF-serratus_M_contig68 73290..73748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932075.7631514-CDS-F-serratus_M_contig68:73058..732891622932075.7631514-CDS-F-serratus_M_contig68:73058..73289Fucus serratus maleCDSF-serratus_M_contig68 73059..73289 +
1690964134.5377314-CDS-F-serratus_M_contig68:73058..732891690964134.5377314-CDS-F-serratus_M_contig68:73058..73289Fucus serratus maleCDSF-serratus_M_contig68 73059..73289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig68.17819.1

>prot_F-serratus_M_contig68.17819.1 ID=prot_F-serratus_M_contig68.17819.1|Name=mRNA_F-serratus_M_contig68.17819.1|organism=Fucus serratus male|type=polypeptide|length=77bp
MFQAFDILPRFELLRAGRKATEASGGSGGKVQGSEAMSVPPLEGGNLWRL
YDLKSRHLSCRIHEEFATDLFELADG*
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mRNA from alignment at F-serratus_M_contig68:72470..73748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig68.17819.1 ID=mRNA_F-serratus_M_contig68.17819.1|Name=mRNA_F-serratus_M_contig68.17819.1|organism=Fucus serratus male|type=mRNA|length=1279bp|location=Sequence derived from alignment at F-serratus_M_contig68:72470..73748+ (Fucus serratus male)
GAAAGTTCGTATTACGACGCGGTGGTCACGGTGAACGTCAAGCGCTGCGA GGAGGTACAGCCCTCCGTGCACGAGCGCGAAGTGACCTTAACAGTCTTAG GTCGCGAGTTCTGTGTGGCCAAGAGCGTTGTGGTGAGAATCGATTGTGCG TGAGAGATGTAAAGTGTAGAAAAGTTGGAACGACTTGATAGGAGTCCCTC GTAATGCTACTCTCTCTCTTTGCGCCTTAAGGCGGGTTATGGTCGAGCGT TTGGGAGCGTAGCCAAAGGGCAGAGGCTCTTCGCCTCGAGCCGAGACTGG CGTCCTGCTTAGAGCTGTGAACTGGTACTTCCTTCCTACCCTTGAAAAAT ATAAGGGCGTAAAAGTACTATCTTGTTCTGCGCCTGTATATAGTACATGA ACGGACTCTGAAACTATATAATACAGTAAGTCGCTAGACTCAATTCCCAT GACGCTTTCGGTTTGTAAAGTTTATTTTACGCGATGCCGATTGCTGCTGC AACGTTGTGCGCCGTTTATGCCTTCCAAGGTTTTGCATAGTTCCATTTGC CGAGAGACATTCAAGAAAGGTGATTTGGGCCTGGGTCAGATGTTCCAAGC TTTCGATATCCTGCCAAGGTTTGAGCTCCTGAGAGCCGGTCGGAAGGCGA CAGAAGCCTCCGGGGGCAGTGGTGGCAAAGTGCAGGGATCGGAGGCTATG AGTGTTCCTCCTTTAGAAGGGGGGAATCTTTGGCGATTGTACGATCTCAA GAGCCGGCACCTCAGCTGCCGCATTCACGAGGAGTTCGCTACGGATCTTT TCGAGCTGGCGGATGGATAACGAACGCCCTCTCGTGTAGGTTTTCGGTTA CACTCGGAGTCAATGGTGGGGCGAGTAACATCCTCTTTCTCCACCCTCGA GTTACTCCTGTGAAACGGTATCAGCAGCCAGTTATCCTTGCACACAGTAT AGTGGAAGGATATCTTTTACGTCTTGTTACCCCCTCGCTTCATATTTTTT TACCCAGGAACAATCTCATGACTACTGTAGAGGCAGCCCTTGACAAAAGA ATGGGTAATCGAGAATGCAATCTCTCGTCCCGGTTTATATGCAGTGCTCA AAGCTAAGTTGGTTGTTTTGGGGATGGCGCAGACAAGGTGAAATCGTTGT TGATGTGATTGTGTCAAGCCCACATGTCCATTTTTGTCGAATTCTGATGG ATGGCGGCGATCGTCGGTAAACCACCAGGTTAAAAGGTTTCATCCATGCG CACTTGACATCGAAAAGGTGTACCCTTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig68:72470..73748+

>mRNA_F-serratus_M_contig68.17819.1 ID=mRNA_F-serratus_M_contig68.17819.1|Name=mRNA_F-serratus_M_contig68.17819.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig68:72470..73748+ (Fucus serratus male)
ATGTTCCAAGCTTTCGATATCCTGCCAAGGTTTGAGCTCCTGAGAGCCGG
TCGGAAGGCGACAGAAGCCTCCGGGGGCAGTGGTGGCAAAGTGCAGGGAT
CGGAGGCTATGAGTGTTCCTCCTTTAGAAGGGGGGAATCTTTGGCGATTG
TACGATCTCAAGAGCCGGCACCTCAGCTGCCGCATTCACGAGGAGTTCGC
TACGGATCTTTTCGAGCTGGCGGATGGATAAATGTTCCAAGCTTTCGATA
TCCTGCCAAGGTTTGAGCTCCTGAGAGCCGGTCGGAAGGCGACAGAAGCC
TCCGGGGGCAGTGGTGGCAAAGTGCAGGGATCGGAGGCTATGAGTGTTCC
TCCTTTAGAAGGGGGGAATCTTTGGCGATTGTACGATCTCAAGAGCCGGC
ACCTCAGCTGCCGCATTCACGAGGAGTTCGCTACGGATCTTTTCGAGCTG
GCGGATGGATAA
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