mRNA_F-serratus_M_contig68.17837.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig68.17837.1
Unique NamemRNA_F-serratus_M_contig68.17837.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig68.17837.1 vs. uniprot
Match: A0A6H5KZU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU7_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.110e-6
Identity = 41/94 (43.62%), Postives = 47/94 (50.00%), Query Frame = 3 
Query:  147 DEDGGNIVWED--GDDXXXXXIDWENNQDHGE------------GVWTKVAPAGGIEEEXXXXEEHLEYTNERRWLGDNGEIVVELPR-ETEDG 383
            DE+  +I WED  G +     I WE + D G+            G      PAG  E E    EE  E   ERRWLGDNGEIVVELPR E E+G
Sbjct:    8 DEEDDDIGWEDDDGQEIDDEGIAWEEDDDEGDXXXXXXXXXXXXGSVAAGGPAGCAEFEEDDLEEEPE---ERRWLGDNGEIVVELPRGEDEEG 98
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig68.17837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZU7_9PHAE8.110e-643.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig68contigF-serratus_M_contig68:716105..719597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size415
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig68.17837.1prot_F-serratus_M_contig68.17837.1Fucus serratus malepolypeptideF-serratus_M_contig68 716105..719454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932074.606721-CDS-F-serratus_M_contig68:716104..7161911622932074.606721-CDS-F-serratus_M_contig68:716104..716191Fucus serratus maleCDSF-serratus_M_contig68 716105..716191 -
1690964133.940019-CDS-F-serratus_M_contig68:716104..7161911690964133.940019-CDS-F-serratus_M_contig68:716104..716191Fucus serratus maleCDSF-serratus_M_contig68 716105..716191 -
1622932074.6256907-CDS-F-serratus_M_contig68:717826..7179751622932074.6256907-CDS-F-serratus_M_contig68:717826..717975Fucus serratus maleCDSF-serratus_M_contig68 717827..717975 -
1690964133.9512486-CDS-F-serratus_M_contig68:717826..7179751690964133.9512486-CDS-F-serratus_M_contig68:717826..717975Fucus serratus maleCDSF-serratus_M_contig68 717827..717975 -
1622932074.6456223-CDS-F-serratus_M_contig68:719420..7194541622932074.6456223-CDS-F-serratus_M_contig68:719420..719454Fucus serratus maleCDSF-serratus_M_contig68 719421..719454 -
1690964133.962811-CDS-F-serratus_M_contig68:719420..7194541690964133.962811-CDS-F-serratus_M_contig68:719420..719454Fucus serratus maleCDSF-serratus_M_contig68 719421..719454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932074.663938-UTR-F-serratus_M_contig68:719454..7195971622932074.663938-UTR-F-serratus_M_contig68:719454..719597Fucus serratus maleUTRF-serratus_M_contig68 719455..719597 -
1690964133.9740186-UTR-F-serratus_M_contig68:719454..7195971690964133.9740186-UTR-F-serratus_M_contig68:719454..719597Fucus serratus maleUTRF-serratus_M_contig68 719455..719597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig68.17837.1

>prot_F-serratus_M_contig68.17837.1 ID=prot_F-serratus_M_contig68.17837.1|Name=mRNA_F-serratus_M_contig68.17837.1|organism=Fucus serratus male|type=polypeptide|length=90bp
MDEDGGNIVWEDGDDDDDEDIDWENNQDHGEGVWTKVAPAGGIEEEEDED
EEHLEYTNERRWLGDNGEIVVELPRETEDGVFNELEANDT
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mRNA from alignment at F-serratus_M_contig68:716105..719597-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig68.17837.1 ID=mRNA_F-serratus_M_contig68.17837.1|Name=mRNA_F-serratus_M_contig68.17837.1|organism=Fucus serratus male|type=mRNA|length=3493bp|location=Sequence derived from alignment at F-serratus_M_contig68:716105..719597- (Fucus serratus male)
CTGGTACTGGTACTGGTACCTCTTGGTATTACGTTCACAGCAAGTCGTAG
CAAAAGAGGTATACTAGTACTCCCGGGCGGTCCTGATTGATTCAAACTGA
GTACAGCCTTGCCAACTACAGGACAAGCAAGGTCTTAAGTCTCATGGACG
AAGATGGAGGCAATATCGTGTGGGAAGGTGACGATTACTTGTTGTAGGAC
TACGGACTGTTCAATTCTGATGAGTACTTGGAGTGCCGCGCTGCCCCTGT
CAGGCCAACAGCAAAAAGTCAGACGTGGAACAATGCTCGATTCGACGTGG
GGGCAGGAGTACAACAGCGTATGATTACAAAATACACTCGTGGAACGCAC
AGCGCTATCGATAATGTCTGCAGAAAATGATCTTGTGCAGCTCAGCTAGT
GATGGCTTCGTGCTTTTGCTGCCGTGCCGTCACAACATCATACGTCTGCG
CTTTAGACAAGCTTCCACCCCCAATACTGATTGTAAGCCATGAGGAGTGC
AACCAAACGCCACAGATCATTCGAGCCCATCGCCCTATCCCGCAATCTTT
CGGACGCTTATGGCCACGTATTGATCTGAAGCCAGGGTATTCGAGCCCAC
CATCCTGCCCCGCAATCTTTCAGGCTCTTCCGACTTCGTATTGATCTGCT
GATTGATCCGTAGCGAAGGTCTTCGCGGGGTACAGTATTCAAGTACAGCA
TTCCTTGATGACTCGATGGTACTATATCGACACTAGTACTATCCTTGTAC
CTGGTACAATGTAATACAGTGCATGGTGATTAATATAAGTGTACAGTATA
AAGGTGGGCTTCTCCCCGACATTGTACTGTTTACCCAAGGTTACTACCAT
TGGGGAACCCGATCAAATACTCTGTAATGGCTTTGTATTTATAGCCTAGT
GTAATGTATTTTACTACTCCCATGTGTGATGGTGTACTATTAATAGTCTA
CATTGTCTGGTTTGTTTTTAATGTTTTTCTGGTGTCCCTGCATGGCGATT
ACCTGTAAATGTACAGTACAACGGTGGGCTTCTCCCTACATTATACTGTT
GACCCAATGTTACTTGCATCGGGGAACCCGTGCAAATGCCATGAAGAGGT
TTTGTTATTGCAGCCTTTGATCCCACCTAAACGTTTTGACATTTTTTTCC
CCCTCACCGGGGGATGCTCAGAAGGTCTAGGGGCGTTCTGTTTTTTCTTT
AAAAGCAACCATGAAGAGGTTTTGTATTTGCAGCCTATGATCCCACCTAA
ACGTTGTGACATTTTCCCCCCATGACTGGGGGATGCTCAGAATGATGAAG
GTCTATTGTAGGCGCCTTCTGTTTTTTCTTTACAACGAAATTACTTCTAC
AAAGAAAACGATTTTACAGCAGTGCAAGTATTGGTATGGTCATCACATAT
AGCAAGAGTAAGGACCAACCGGGTAAGGTTGGTGTATGAAGTGAGCATGT
TGAAAGTAACGGCGGTTGTATGTATGTATGTATGGTCATCACATACCAGG
TATAGCAGAGTGTGGATCAACCGGGGTAGGTTGCCAATCCTGCTCGTGGT
CAGCTGAACAGGGACAAAACATATTTCCCTGTCCCCGTTCGCTGTATTTG
TGTCGTTGTCTTTCTGTCCAAGATGGTGATGATGACGACGACGAAGACAT
CGACTGGGAGAATAACCAGGACCACGGCGAAGGTGTCTGGACGAAGGTCG
CCCCTGCTGGGGGGATAGAAGAGGAAGAGGACGAGGACGAGGAACACTTG
GAATACACCAATGAACGCCGGGTAAGAGGGTTAACCGATACCAGGTACAG
TAGTATATTTATGTATTTATGTATGATGTATGGCCACACATATTGCAAGA
GTATGGATCAAGCGAGTAAGGATGCTAGTCCTGCTCGTGGTCGGCTGAAC
AGGGAAAATGAATATTTCCTGGTCCACGTTCGCGCCTGAGAATTTAGCCT
CGCGAGACGGGTTCGGTAGTACCGTCCCGCGTCAGGCTGCTCATCTCCGT
GCTCAAGCTGAATCTGGTTACAGTGGACGGATACTGTACAGCACTCGTGG
TACGGACGTTATTCGTACTCTTAGTCTACACCGATAGTTTGCTTGAACTC
GACACGCACAGCCGACACCCCTTTGACGGAGACAAACACGCATACAGGGT
TGCTCCATTCGGGTGTTTCGACCAATCAATCAATAAGTGAGGCCTACCAC
AGCCAGTAGCCCCCCCTTTTTTCTTCAAAACTTCCACTGCATCTATTAAA
CGGTGGGCTTCTCCCCGACATTATACTGTTGACCCAATGTTTCTACCATC
GGGGGAGCCCGTTTAAATGCCATAAAGAGGTATTGTCTTTGCAGCCCATG
ATCCCTCCTAAACGTTTTGACATTTTTCCCCCTGACCGGGGGTGCTCAGA
GTGCGTTCAGATTTTTCTTTGAAAGAAAAAGACAGGACACGAGAACCAAC
CTCACGAACACGCTGCCGTTCCAAGTGGGTACATCAGCTATTACAGCAGT
AGCTCGTCGCCCGAGTGGCCCAGTAGGTAACCTGCACACCTGCTAGTGCG
GAAGTCGTGAGTTCGATTCTTACCTATTTGTGTTCTTTTTTTCGTAACGG
AAAGCGTTAGTACTAATAGTTTGTAAGTAAAATTTAACCGTTAGTTGACG
AATTGTAAGATTGCTTAACTTGCATCGCGATAAAAAATCGTAAGGCGTGA
ACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATTGTAATG
ATTAATTATGAGGTCCATCGGCTGTAAGTGAGATTAAAAAATAAAATAAA
AAATACTGATGTTATGCTTTGTAACAAAAAACACATTGCCGAATGTTACA
CAACTACAGTACACTATTATTTATAACATCAGAGCTATGAGAGTACCGTG
TGGAGTCACCAGTAACGTAATGCAGAGTGTACATGGAATGCTGGGCACTG
TTGTAGTTTATATGTGCTCCAGACGACCCCACTTTTTTTTACGTGGTTTG
TTTATTTTTTGAAGAAAATACAGAACGCACCTAGACCTTCTTATTTTTTG
TTGCACGCTGTCCTGCTGCATACCGGTATAGGTATATGTCCAAAGCTCAG
GACCGCTATCTTTTGCTAGCACTTTATTGTACTTACTACCGGTACTGTAT
TGTTACTCCAGCGGTCGAGTCGAAGGGAGGTCCATTACATGCAGTAACCT
CCAGTCACAAGCGTGAAATCAGCAGATCATTTTCTAAACCACTTAAACCT
CCACTGCTGTCGGTGTTGCAGTTTGTAACGCGTAATACATTCGAAACGCC
TACATACTCGTACAAAAACGTGTTCAAGTACTACATCGCAAGACATAGCC
TCAACTTGTACTTTGTATGTTATGGCAATCACTCAATGCCTTTGAAAACA
CGACAGTGGCTCGGAGACAACGGCGAAATTGTGGTGGAGCTCCCGCGCGA
AACCGAAGACGGAGTTTTCAATGAGCTGGAGGCGAACGACACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig68:716105..719597-

>mRNA_F-serratus_M_contig68.17837.1 ID=mRNA_F-serratus_M_contig68.17837.1|Name=mRNA_F-serratus_M_contig68.17837.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig68:716105..719597- (Fucus serratus male)
ATGGACGAAGATGGAGGCAATATCGTGTGGGAAGATGGACGAAGATGGAG
GCAATATCGTGTGGGAAGATGGTGATGATGACGACGACGAAGACATCGAC
TGGGAGAATAACCAGGACCACGGCGAAGGTGTCTGGACGAAGGTCGCCCC
TGCTGGGGGGATAGAAGAGGAAGAGGACGAGGACGAGGAACACTTGGAAT
ACACCAATGAACGCCGGATGGTGATGATGACGACGACGAAGACATCGACT
GGGAGAATAACCAGGACCACGGCGAAGGTGTCTGGACGAAGGTCGCCCCT
GCTGGGGGGATAGAAGAGGAAGAGGACGAGGACGAGGAACACTTGGAATA
CACCAATGAACGCCGGTGGCTCGGAGACAACGGCGAAATTGTGGTGGAGC
TCCCGCGCGAAACCGAAGACGGAGTTTTCAATGAGCTGGAGGCGAACGAC
ACATGGCTCGGAGACAACGGCGAAATTGTGGTGGAGCTCCCGCGCGAAAC
CGAAGACGGAGTTTTCAATGAGCTGGAGGCGAACGACACA
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