mRNA_F-serratus_M_contig679.17797.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig679.17797.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI) HSP 1 Score: 934 bits (2415), Expect = 5.880e-297 Identity = 710/1649 (43.06%), Postives = 867/1649 (52.58%), Query Frame = 2
Query: 1628 PIAHAPVMSAEGSWLGARVSADPRPLPPQTPTTGFDRGAGASTVAAAVAASSSGLSSQPVPRARHFQAVAL--DG----TPGGAQVQAQAGGGRGRNGGGVRLKAGSGYEAXXXXXXXXXXXXXXXXXXXXXXXAQASVSYTMPLVRLVEEGTEGGRGGGVLGEKAEKSILNVIIIFSSLICRQACRG-GGVSVLPGQVAAMRRQRQIKAAEPLSQRGLTRFQQSQLLEEKVAQFKDVRSRLRMVLERKPQIFPPVKPPRRRKTLWDFLLDEMRLVATDYHEEKKLARHLTRGVAQRAKLVRRELCEGQAQARDGRISDAGRSICNHLSLLISAPPSSAKALQNGGDGSQLHTALPAAG---MAXXXXXXGVGTGQEEA-----EAELLPSELNRIGLEVEQSVEQARAVLAAALKGDVGRTPAVKMEGLDLGEGDASQANGGLGYGHLTARDLSRAPDSWGMALSLLPHQAQALAWVRALSSRGLGSVLSDEPGTGKTVTAAASVAWVAACRAIVETRRANAFMAQEWRRLADESVKRDSQVGFSAIQIGGLAMSLEPVSGGRMVAAGGGANKAVSK-GIRVMRPRPGRFAPPPQLVIVPSLAMARWHMELAQTCPRLVIQVWEDWREEEEGEGRK---------------------------GGSLGENRRSSASSSYATRLSSADVVLCSLERLADAGGGGATADSRVARSVRWSQCVIRCAMTGAQAEVYSAIARSPEVVAALAGEA--LPTQATSNGSCPAPGGGLGRPLGGAASRSPVKAALLTLRRAAFTAALEKPSSR--------------GCNAQQAQQQQQKDAETRRDAFWKEHSKDLELSVPERLEKYSGKLVRLGDTVRRLTGAGKKVVILGCLPEALALVGQYLTETGVPHECWSSTGNTKGTAVGRADDRAED--TVRLSLRSSTFFCSIMLLPVSSESCTDGWDPANVNNESIGYETRRLANTVKRARSPF--HEDFFSCSPSSQPLPSKWPSRSSGSLHERSWNEVQAPLWRFRSSPRTAVLLAPPSALMYPEMGGLRCGTN----RPSGAR-----FVGLGPVDAVLVLDEDPETGS--------------YARHSLSNALRCLLTVPLCAR-----------------GAAPRGGXXXXXXXXXXXXXXXXXKVITVVRFVTEGTIEEAFEAQGAGSGIGSLEGRKLEDVVFGSEAAAAMAAAGVANAAVGGEPAAPTGLGADGXXXXXXXXXXGKGKGARSFPLAGKRFSPNWNGHKKQERDGSP-----GTKRRISDGAPLD----IDWL-----HWNSAPLPLPGLCSDSDSPLGAQEILLEDLVQMDPSGFDTGIGSFDTDETRVFARLAEANHPVPPSLLMYPSDVTLPQNPGRSFTDRVRDLHLLGISPDPFLHCMACIDLKMPPDHNMVLNEAVEVPSWMDTSFGQDLGCSLSYVDKLPGTRQKKSKKAVREPRNQGGSGANPVQGPR--TSIEDWTTLEDKRICKAVEQFGESWTVVAFIVNNRPSLRGRMRSPNQCRARHGNLQSMPNVMGAIRRLSDLASSPE-VKLAPNHSRAPIVAQEPPPMVHAMRNRVPLLPTTNPVARQTYVPKFSALVSATRKKPAPTPIPGCNNPDVVLQAA 6214
P+ HAPV+ G WLGARV ADPRP VA AVA+S L P+PR R F+ V L DG T + +A+A GG RNGG V XXXXXXXXXXXXXXXXXXXXXXX ++ + V + + +A RG GG+ +LPG+VAAMRR R +KAAEP +QRGLTRFQ SQ+LEEK FKDVR+RLR+VLERKP+I PPVKPPRRRKTLWDFLLDEMRL+ATDY+EE+KLARHL RGVA R +L RRELCEG+ QARDGR++DAG +IC HLSLL S+P + GVG G+ EA E EL EL+RIG EVEQ +A+A++ A+L GD G+ VK+EG+ +G S NG GY ++R+LSRAPDSWGMA+ LLPHQA+AL+W+RAL+ RGLG VL D+ GTGKTVTAAA+VA VAACR++VET R + F+AQE +RL++ VK +++ +A + + G MRPRPG APPPQLV+VPS AMARWHMELAQ CPRLVI+VWE+WR +E GGS+ R ++ R SSADVVLCSLERLA+ GG RCAMT QA+VYSA+ARS EVVAAL+GE +P A ++ P G Q AE +++ FW+ H KDLELSVPERLEKYSGKL +LG V RL AGKKV++LG LP+A LV QYL ET VPHECW+ G R D T + + G A +P H + PS P P P HER W+ VQ PLWRFR SPRT VLLAPPSA++ GG N RP G+ +GLGP+DAVL+ DE P + ++R +L+ AL+ LLT+P CAR AA G XXXXXXXXXXXX V+TVVR+V GTIEE E +G GI SL G G +G A L GK F +G+ GTKR+ +DG +D L HW+ PL C S P+G ++IL+E++VQM+P FDTG G FDTDETRVFARLA+ HPVPP LL Y D TL PGRSFT+RVRDLHLLGISP+PFLHCM CIDL MPPDHNMVLNEAVEVPSWM TSFGQDL CSLSYVD+LP R KK KKA+ + G P G R TS+E+WT +ED + AV+QFGE+W +VAF +N P LRGRMRS +Q +ARH NL ++ GA + S + P+ V+L P + +PL+P ARQ + +F+ALV A +KKP P PIPGC+NP+V A+
Sbjct: 504 PLPHAPVLGCAGLWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLG-YPLPRKRRFRPVGLGEDGDKAATGTAFEAKAEAEGGVTRNGG-VEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQWYEHYHAVRRVRDN----EASRGEGGLPILPGEVAAMRRHRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARRELCEGRPQARDGRVADAGVAICRHLSLLASSPXXXXXXXXXXXXXXXXXXXXXXXXKGPLLASWSSGGVG-GETEAVGGGEEVELTMPELSRIGFEVEQLTTRAKALVEASLAGDAGKASPVKIEGMVASDGPGS--NGVAGYEEFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLAQEKKRLSERLVKGEAEESGAASGXXXXXXXXXXXXXXXXXXXXXXXKASPPRQGTLAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXXXXXXQQKLSPQATAAGGSVSGKARLPPTA----RRSSADVVLCSLERLAEVDGGXXXXXXXXXXXXXXXXXXXRCAMTKPQAKVYSAVARSREVVAALSGEGTTIPPPALASNGLSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALLSAGQ------AEAQKEEFWRGHVKDLELSVPERLEKYSGKLAKLGRAVARLAAAGKKVLVLGALPDARLLVHQYLVETDVPHECWAGNGEMFPNVAEEESTRGVDAGTAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSVGPGVAAXXXXXXXSPALAPLSAHHNPLGSFPSRSPFPQA-PVTPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEAVAGGSGLCPNGEQPRPDGSSVRRGSLLGLGPIDAVLIFDEGPPITTRTTAXXXXXXXXXXWSRAALAAALQSLLTLPRCARRSSAPRAIRSMPATGGGAAADENGRVDGXXXXXXXXXXXXESVVTVVRYVANGTIEETLEGEGD-KGISSL------------------------------------GAGGEGI--------------AVRCSLEGKTFLKQGEAASASASEGTEAVSLSGTKRKAADGXXXXGCSGVDMLGANGKHWSEGAPPLRRTCPWS--PVGVEDILVEEMVQMNPDDFDTGRGCFDTDETRVFARLADGGHPVPPPLLSYAVDATLATTPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLSCSLSYVDRLPSNRNKKLKKALSPRESSRREGEQPGAGRRNKTSVEEWTKMEDTLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQNKARHANLVAL----GAAGQRSPRGARPKSVRLPPTY--------------------LPLVPVAGAAARQAFSARFAALVKAVKKKPIPPPIPGCDNPEVEALAS 2055
BLAST of mRNA_F-serratus_M_contig679.17797.1 vs. uniprot
Match: A0A6H5JI88_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI88_9PHAE) HSP 1 Score: 484 bits (1246), Expect = 3.460e-143 Identity = 319/736 (43.34%), Postives = 396/736 (53.80%), Query Frame = 2
Query: 4409 HEDFFSCSPSSQPLPSKWPSRSSGSLHERSWNEVQAPLWRFRSSPRTAVLLAPPSALMYPEMGGLRCGTN----RPSGAR-----FVGLGPVDAVLVLDEDPE-TGSYARH--------SLSNALRCLLTVPLCAR----------------GAAPRGGXXXXXXXXXXXXXXXXXKVITVVRFVTEGTIEEAFEAQGAGSGIGSLEGRKLEDVVFGSE-----AAAAMAAAGVANAAVGGE---------------------------------------------PAAPTGLGADGXXXXXXXXXXGKGKGARSFPLAGKRFSPNWNGHKKQERDGSP-----GTKRRISDGAPLDI---DWLHWNSAPLPLPGLCSDSDSPLGAQEILLEDLVQMDPSGFDTGIGSFDTDETRVFARLAEANHPVPPSLLMYPSDVTLPQNPGRSFTDRVRDLHLLGISPDPFLHCMACIDLKMPPDHNMVLNEAVEVPSWMDTSFGQDLGCSLSYVDKLPGTRQKKSKKAVREPRNQGGSGANPVQGPR--TSIEDWTTLEDKRICKAVEQFGESWTVVAFIVNNRPSLRGRMRSPNQCRARHGNLQSMPNVMGAIRRLSDLASSP-EVKLAPNHSRAPIVAQEPPPMVHAMRNRVPLLPTTNPVARQTYVPKFSALVSATRKKPAPTPIPGCNNPDVVLQAAHQSHAEAAKDGFMGLGGGGPVGALAPTQITDMQRANYIQ 6331
H + PS P P P+ HER W+ VQ PLWRFR SPRT VLLAPPSA++ GG N RP G+ GLGP+DAVL+ DE P T + A +L+ AL+ LLT+PLCAR GAA G +V+TVVR+V +GTIEE E +G GI SL GR L +V+FG +A ++A + AA E PAA +G +G A L GK + +G+ GTKR+ G D+ D HW+ PL C S P+ ++IL+E++VQM+P FDT G FDTDETRVFARLAE HPVPP LL Y D TL PGRSFT+RVRDLHLLGISP+PFLHCM CIDL MPPDHNMVLNEAVEVPSWM TSFGQDLGCSLSYVD+LP R KK KKA+ + G +P G R TS+E+WT +ED + AV+QFGE+W +VAF +N P LRGRMRS +QC+ARH NL ++ GA + S + P V+L P + I+ +P + AMR+RVPL+P ARQ + +F+ALV A +KKP P PIPGC+NP+ ++Q AH SHA+AA++ G GALAPTQITD QRA IQ
Sbjct: 78 HHNPLGSFPSRSPSPQA-PATPPKPAHERLWSGVQGPLWRFRCSPRTPVLLAPPSAILEAVAGGSGLCPNGEQPRPDGSSVRKGSLCGLGPIDAVLIFDEGPPITRATATXXXXXXXXAALAAALQSLLTLPLCARRSSAPRAIRSMLATGGGAADENGRVDRGGVATAAGRAEGERVVTVVRYVVDGTIEETLEGEGD-KGISSLGGRPLGEVLFGPTYSDRGSAKPVSAGATSEAASAPEIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPPAAGAEVGVEGI--------------AVRCSLEGKTYLKQGEAASASASEGTEAVSLSGTKRKAGGGGGADMLGADGKHWSEGAPPLRRTCPWS--PVRVEDILVEEMVQMNPDDFDTERGCFDTDETRVFARLAEGGHPVPPPLLSYAVDATLAATPGRSFTERVRDLHLLGISPEPFLHCMPCIDLAMPPDHNMVLNEAVEVPSWMSTSFGQDLGCSLSYVDRLPSNRSKKLKKALSPRESSRREGEHPGAGRRNKTSVEEWTKMEDSLLVSAVQQFGENWVLVAFSINKCPILRGRMRSGSQCKARHANLVAL----GAAGQRSQRGARPLSVRLPPTYRGTAILPDQPAALTMAMRSRVPLVPVAGAAARQAFAARFAALVKAVKKKPIPPPIPGCDNPEALIQPAHNSHAKAAEEA-------GAAGALAPTQITDRQRAALIQ 784
BLAST of mRNA_F-serratus_M_contig679.17797.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE) HSP 1 Score: 474 bits (1220), Expect = 1.780e-138 Identity = 345/719 (47.98%), Postives = 422/719 (58.69%), Query Frame = 2
Query: 1628 PIAHAPVMSAEGSWLGARVSADPRPLPPQTPTTGFDRGAGASTVAAAVAASSSGLSSQPVPRARHFQAVAL-----DGTPGGA-QVQAQAGGGRGRNGG--GVRLKAGSGYEAXXXXXXXXXXXXXXXXXXXXXXXAQASVSYTMPLVRLVEEGTEGGRGGGVLGEKAEKSILNVIIIFSSLICRQACRGGG-VSVLPGQVAAMRRQRQIKAAEPLSQRGLTRFQQSQLLEEKVAQFKDVRSRLRMVLERKPQIFPPVKPPRRRKTLWDFLLDEMRLVATDYHEEKKLARHLTRGVAQRAKLVRRELCEGQAQARDGRISDAGRSICNHLSLLISAPPSSAKALQNGGDGSQLHTALPAAGM-----AXXXXXXGVGTGQEEAEAELLPSELNRIGLEVEQSVEQARAVLAAALKGDVGRTPAVKMEGLDLGEGDASQANGGLGYGHLTARDLSRAPDSWGMALSLLPHQAQALAWVRALSSRGLGSVLSDEPGTGKTVTAAASVAWVAACRAIVETRRANAFMAQEWRRLADESVKRDSQVGFSAIQIGGLAMSLEPVSGGRMVAAGGGANKAVSK---GIRVMRPRPGRFAPPPQLVIVPSLAMARWHMELAQTCPRLVIQVWEDWREEEEGEGRK-----------------------GGSLGENRRSSASSSYATRLSSADVVLCSLERLADAGGGGATADSRVARSVRWSQCVI 3664
P+ HAP++ G WLGARV ADPRP VA AVA+S L P+PR R F+ + L +G G A + + + GG RNGG G XXXXXXXXXXXXXXXXXXXXXXX + +A RGGG + + PG+VAAMRRQR +KAAEP +QRGLTRFQ SQ+LEEK FKDVR+RLR+VLERKP+I PPVKPPRRRKTLWDFLLDEMRL+ATDY+EE+KLARHL RGVA R +L RRE CEG+ QARDGR++DAG +IC HLSLL S+PP + G+G G+E EL EL+RIG EVEQ +A+A++ AAL GD G+ VKMEGLD +G NG GY ++R+LSRAPDSWGMA+ LLPHQ +AL+W+RAL+ RGLG VL D+ GTGKTVTAAA+VA VAACR++VET R + F+ QE +RL++ VK +++ +A G + G + S+ G MRPRPG APPPQLV+VPS AMARWHMELAQ CPRLVI+VWE+WR +E GGS+ R ++ R SS DVVLCSLERLA+ GG +AD+R+ARSVRWSQ V+
Sbjct: 65 PLPHAPILGCAGRWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLG-YPLPRKRRFRPLGLGGDGDEGATGAAFEAKVEGEGGVTRNGGVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWYQHYHAVRRVRDNEASRGGGGLPIPPGEVAAMRRQRLVKAAEPQNQRGLTRFQLSQMLEEKTKAFKDVRARLRLVLERKPRILPPVKPPRRRKTLWDFLLDEMRLIATDYNEERKLARHLLRGVANRTRLARREFCEGRPQARDGRVADAGVAICRHLSLLGSSPPXXXXXXXXXXXXXXXXXXXXXXXKGPLLASCPSTSGGIGGGEE---MELTMPELSRIGFEVEQLTTRAKALVEAALAGDAGKASPVKMEGLDALDGTG--INGAAGYNEFSSRNLSRAPDSWGMAVHLLPHQEKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIFLVQEEKRLSEHLVKGEAEESGAAS--GASSAGXXXXXXXXXXXXXGRTSTKASRPGRGALAMRPRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQEHXXXXXXXXXXXXXXXXLQQKLSPQATAAGGSVSGKARLPPTA----RRSSVDVVLCSLERLAEVDGG-VSADARLARSVRWSQVVL 770 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig679.17797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig679.17797.1 >prot_F-serratus_M_contig679.17797.1 ID=prot_F-serratus_M_contig679.17797.1|Name=mRNA_F-serratus_M_contig679.17797.1|organism=Fucus serratus male|type=polypeptide|length=1865bp MQALAKAQAAAAAAAAAKAKAQAAKAQAAAQAQATAQAQAIAQAQAAAQAback to top mRNA from alignment at F-serratus_M_contig679:74449..110752- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig679.17797.1 ID=mRNA_F-serratus_M_contig679.17797.1|Name=mRNA_F-serratus_M_contig679.17797.1|organism=Fucus serratus male|type=mRNA|length=36304bp|location=Sequence derived from alignment at F-serratus_M_contig679:74449..110752- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig679:74449..110752- >mRNA_F-serratus_M_contig679.17797.1 ID=mRNA_F-serratus_M_contig679.17797.1|Name=mRNA_F-serratus_M_contig679.17797.1|organism=Fucus serratus male|type=CDS|length=11190bp|location=Sequence derived from alignment at F-serratus_M_contig679:74449..110752- (Fucus serratus male)back to top |