mRNA_F-serratus_M_contig679.17806.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig679.17806.1
Unique NamemRNA_F-serratus_M_contig679.17806.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig679.17806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig679contigF-serratus_M_contig679:292199..293076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932068.424232-CDS-F-serratus_M_contig679:292198..2924001622932068.424232-CDS-F-serratus_M_contig679:292198..292400Fucus serratus maleCDSF-serratus_M_contig679 292199..292400 +
1690964130.213631-CDS-F-serratus_M_contig679:292198..2924001690964130.213631-CDS-F-serratus_M_contig679:292198..292400Fucus serratus maleCDSF-serratus_M_contig679 292199..292400 +
1622932068.4436946-CDS-F-serratus_M_contig679:292997..2930741622932068.4436946-CDS-F-serratus_M_contig679:292997..293074Fucus serratus maleCDSF-serratus_M_contig679 292998..293074 +
1690964130.2319536-CDS-F-serratus_M_contig679:292997..2930741690964130.2319536-CDS-F-serratus_M_contig679:292997..293074Fucus serratus maleCDSF-serratus_M_contig679 292998..293074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig679.17806.1prot_F-serratus_M_contig679.17806.1Fucus serratus malepolypeptideF-serratus_M_contig679 292199..293074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig679.17806.1

>prot_F-serratus_M_contig679.17806.1 ID=prot_F-serratus_M_contig679.17806.1|Name=mRNA_F-serratus_M_contig679.17806.1|organism=Fucus serratus male|type=polypeptide|length=93bp
SHRCISRLDLRHSLHCCRTINDHFTSLGDYLHHLFGWSTAALCCICHDRT
PSYGSPAGAGTRGAVPTGRKMTVVRCQLFLQKPPGSSLHVILA
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mRNA from alignment at F-serratus_M_contig679:292199..293076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig679.17806.1 ID=mRNA_F-serratus_M_contig679.17806.1|Name=mRNA_F-serratus_M_contig679.17806.1|organism=Fucus serratus male|type=mRNA|length=878bp|location=Sequence derived from alignment at F-serratus_M_contig679:292199..293076+ (Fucus serratus male)
AGCCATCGATGTATCAGCCGTCTTGACCTCCGTCACAGCCTCCACTGCTG
CCGTACTATCAATGACCACTTCACCAGTCTCGGCGACTACCTTCATCATC
TTTTTGGCTGGTCGACAGCAGCTTTATGCTGTATTTGCCATGATCGGACG
CCTAGTTATGGGTCGCCCGCAGGTGCTGGAACTAGAGGCGCTGTCCCCAC
CGGTGAGTCACTTGCGAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGATTCGCACATTCAGCGCATTACCCTGGCAACTGAAGGAACTACGGT
GACACAACAAGTCAGCCATAGACCTATCAAATGTTAATCCCGCTTGTGGT
CACAAAGTGGTACAAAGGTCATCGGGCCACATCATGGTGACAACCCGCTC
CTCAGACCAACAGAGATCCAAATCACGACAAAAAGTTATGCGACTCTACA
AGCAATGGCACTGACCAATATCAAAACAGTTCATCAAACATCCTTACTCC
ATATCGAGAGCAACCTCGATCGACTCGGATTGTTGTTGCCTACTCACGGA
CCAGCGTTCTCAGCAAAAAAACGGAAGAATTACGCTCCAACCAGTTTTGA
TCAACAAGAAGTCTCAGTTTCTCAAGGCCACACAATCGTACAGAAATAAG
GAAAATTGAAATACTGAGGTCCATGGTGGTGGAGGCCTTGGGTTGGTGAA
GCCGGCGCGCGAGCCAGTATCCAGCAGTCCGAAGCCCTGTGCATCCCTGC
AAAAGCCCCACGAATCTTGCTCGTTCGCCGCTCCTTGTGACCTACGTAGG
AAGAAAAATGACCGTGGTCAGATGTCAGCTTTTCCTTCAGAAACCTCCCG
GTTCAAGCCTGCATGTGATTCTCGCGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig679:292199..293076+

>mRNA_F-serratus_M_contig679.17806.1 ID=mRNA_F-serratus_M_contig679.17806.1|Name=mRNA_F-serratus_M_contig679.17806.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig679:292199..293076+ (Fucus serratus male)
AGCCATCGATGTATCAGCCGTCTTGACCTCCGTCACAGCCTCCACTGCTG
CCGTACTATCAATGACCACTTCACCAGTCTCGGCGACTACCTTCATCATC
TTTTTGGCTGGTCGACAGCAGCTTTATGCTGTATTTGCCATGATCGGACG
CCTAGTTATGGGTCGCCCGCAGGTGCTGGAACTAGAGGCGCTGTCCCCAC
CGAGCCATCGATGTATCAGCCGTCTTGACCTCCGTCACAGCCTCCACTGC
TGCCGTACTATCAATGACCACTTCACCAGTCTCGGCGACTACCTTCATCA
TCTTTTTGGCTGGTCGACAGCAGCTTTATGCTGTATTTGCCATGATCGGA
CGCCTAGTTATGGGTCGCCCGCAGGTGCTGGAACTAGAGGCGCTGTCCCC
ACCGGAAGAAAAATGACCGTGGTCAGATGTCAGCTTTTCCTTCAGAAACC
TCCCGGTTCAAGCCTGCATGTGATTCTCGCGGAAGAAAAATGACCGTGGT
CAGATGTCAGCTTTTCCTTCAGAAACCTCCCGGTTCAAGCCTGCATGTGA
TTCTCGCG
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