mRNA_F-serratus_M_contig6769.17788.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6769.17788.1
Unique NamemRNA_F-serratus_M_contig6769.17788.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6769.17788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6769contigF-serratus_M_contig6769:6487..6820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size117
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6769.17788.1prot_F-serratus_M_contig6769.17788.1Fucus serratus malepolypeptideF-serratus_M_contig6769 6533..6820 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932067.2003157-UTR-F-serratus_M_contig6769:6486..65321622932067.2003157-UTR-F-serratus_M_contig6769:6486..6532Fucus serratus maleUTRF-serratus_M_contig6769 6487..6532 -
1690964129.7163644-UTR-F-serratus_M_contig6769:6486..65321690964129.7163644-UTR-F-serratus_M_contig6769:6486..6532Fucus serratus maleUTRF-serratus_M_contig6769 6487..6532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932067.2180595-CDS-F-serratus_M_contig6769:6532..65681622932067.2180595-CDS-F-serratus_M_contig6769:6532..6568Fucus serratus maleCDSF-serratus_M_contig6769 6533..6568 -
1690964129.733528-CDS-F-serratus_M_contig6769:6532..65681690964129.733528-CDS-F-serratus_M_contig6769:6532..6568Fucus serratus maleCDSF-serratus_M_contig6769 6533..6568 -
1622932067.2311904-CDS-F-serratus_M_contig6769:6739..68201622932067.2311904-CDS-F-serratus_M_contig6769:6739..6820Fucus serratus maleCDSF-serratus_M_contig6769 6740..6820 -
1690964129.744753-CDS-F-serratus_M_contig6769:6739..68201690964129.744753-CDS-F-serratus_M_contig6769:6739..6820Fucus serratus maleCDSF-serratus_M_contig6769 6740..6820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6769.17788.1

>prot_F-serratus_M_contig6769.17788.1 ID=prot_F-serratus_M_contig6769.17788.1|Name=mRNA_F-serratus_M_contig6769.17788.1|organism=Fucus serratus male|type=polypeptide|length=39bp
GYDHESSTHRHFISLLTFLLKKGVMMKVDYELRVQDQE*
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mRNA from alignment at F-serratus_M_contig6769:6487..6820-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6769.17788.1 ID=mRNA_F-serratus_M_contig6769.17788.1|Name=mRNA_F-serratus_M_contig6769.17788.1|organism=Fucus serratus male|type=mRNA|length=334bp|location=Sequence derived from alignment at F-serratus_M_contig6769:6487..6820- (Fucus serratus male)
GGGTATGATCACGAGAGCAGCACCCATCGGCATTTCATCTCCCTTCTGAC
TTTCCTTTTGAAAAAGGGTGTCATGATGAAGGTGGGTGATCGAGTTACAG
ACAACTACAAAATGGACGTGAAACTGAGGATCGAACGACAGTTCTGACTG
ACGACAGTGTCCATTATTACCTTAGGGCGAGGCAAAATACCTCGCGCGTG
GTTTTGTTTCTGGATTCGAAAATTTCCCATACAGCATAATTTGTTTTGAC
AGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGCATCTCTCCAGG
CCACCGTAAGAGACGACGAGGGCGTAATGTTCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6769:6487..6820-

>mRNA_F-serratus_M_contig6769.17788.1 ID=mRNA_F-serratus_M_contig6769.17788.1|Name=mRNA_F-serratus_M_contig6769.17788.1|organism=Fucus serratus male|type=CDS|length=234bp|location=Sequence derived from alignment at F-serratus_M_contig6769:6487..6820- (Fucus serratus male)
GGGTATGATCACGAGAGCAGCACCCATCGGCATTTCATCTCCCTTCTGAC
TTTCCTTTTGAAAAAGGGTGTCATGATGAAGGGGTATGATCACGAGAGCA
GCACCCATCGGCATTTCATCTCCCTTCTGACTTTCCTTTTGAAAAAGGGT
GTCATGATGAAGGTGGACTACGAGCTTCGAGTACAAGACCAAGAGTAGGT
GGACTACGAGCTTCGAGTACAAGACCAAGAGTAG
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