mRNA_F-serratus_M_contig6761.17787.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6761.17787.1
Unique NamemRNA_F-serratus_M_contig6761.17787.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 7.980e-25
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 AAVASPPSTAASTDPFDARVLDPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEALTE 192
            AA+A+PP++AAS DPFD RVLDPRM VEELPP+HSLVLNKFN++RNHALIIT EFQSQ+EALTE
Sbjct:  378 AAIATPPASAASDDPFDPRVLDPRMAVEELPPSHSLVLNKFNTMRNHALIITTEFQSQQEALTE 441
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BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: D8LQY6_ECTSI (Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY6_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.480e-22
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 AAVASPPSTAASTDPFDARVLDPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEALTE 192
            AA+A+PP++AAS DPFD RVLDPRM   ELPP+HSLVLNKFN+VRNHALIIT EFQSQ+EALTE
Sbjct:  223 AAIATPPASAASDDPFDPRVLDPRM---ELPPSHSLVLNKFNTVRNHALIITTEFQSQQEALTE 283
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BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: A0A150H394_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H394_GONPE)

HSP 1 Score: 54.7 bits (130), Expect = 4.370e-7
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   64 DPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEAL 186
            +P + V  L PAHSLVLNKFN VR+H ++IT+EF+SQ E L
Sbjct:  107 EPDLFVRHLGPAHSLVLNKFNVVRHHTIVITREFRSQAEPL 147
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BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: A0A8J4EWE9_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EWE9_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 1.140e-6
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   19 PSTAASTDPFDARVL--DPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEAL 186
            P+ A+S  P+    L  +P + V EL   HSLVLNKFN V++H L+IT+EF+SQ E L
Sbjct:  193 PTAASSAPPWRNPFLPPEPELFVRELDAEHSLVLNKFNVVQHHVLVITREFRSQAEPL 250
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BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: A0A2T4V0F9_VITXG (ATP adenylyltransferase n=1 Tax=Vitiosangium sp. (strain GDMCC 1.1324) TaxID=2138576 RepID=A0A2T4V0F9_VITXG)

HSP 1 Score: 53.1 bits (126), Expect = 1.460e-6
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   28 AASTDPFDARVLDPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEALTEA 195
            AA  +PF+    DP M+V ++PPAH+ +LNKFN V +H L++T+ F+ QE  LT A
Sbjct:   73 AAPFNPFENP--DPVMVVGDVPPAHTCMLNKFNVVEHHLLLVTRIFEEQESPLTAA 126
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BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: D8U0T8_VOLCA (FHA domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U0T8_VOLCA)

HSP 1 Score: 52.4 bits (124), Expect = 2.950e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   64 DPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEAL 186
            +P + V  L P HSLVLNKFN V +H L+IT+EF+SQ E L
Sbjct:   67 EPELFVRHLGPEHSLVLNKFNVVHHHVLVITREFRSQAEPL 107
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BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: UPI001874EFB0 (ATP adenylyltransferase n=1 Tax=Corallococcus sp. ZKHCc1 1396 TaxID=2710757 RepID=UPI001874EFB0)

HSP 1 Score: 50.8 bits (120), Expect = 9.470e-6
Identity = 24/57 (42.11%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   19 PSTAASTDPFDARVLDPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEALT 189
            PS+AA  +PF +   +P +++ ++ PAH  +LNKFN V +H L++T++F+SQ+  LT
Sbjct:   63 PSSAAPFNPFASP--EPALVLGDVAPAHVCLLNKFNVVEHHLLLVTRDFESQDALLT 117
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BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: A0A8J4DBT7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4DBT7_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.020e-5
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   19 PSTAASTDPFDARVL--DPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEAL 186
            P+ A S  P+    L  +P + V +L   HSLVLNKFN V++H L+IT+EF+SQ E L
Sbjct:  185 PTAALSPPPWRNPFLPPEPELFVRQLGAEHSLVLNKFNVVQHHVLVITREFRSQAEPL 242
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BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: A0A7S3QRK2_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QRK2_DUNTE)

HSP 1 Score: 50.4 bits (119), Expect = 1.400e-5
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   64 DPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEAL 186
            +P+++V EL  +H LVLNKFN VR+H L++TK FQ+Q + L
Sbjct:  147 EPQLLVGELSDSHLLVLNKFNVVRHHVLVVTKAFQAQHDPL 187
[Close]
BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Match: A0A3A8N3N5_9DELT (ATP adenylyltransferase (Fragment) n=3 Tax=Corallococcus TaxID=83461 RepID=A0A3A8N3N5_9DELT)

HSP 1 Score: 49.7 bits (117), Expect = 1.700e-5
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   16 PPSTAASTDPFDARVLDPRMIVEELPPAHSLVLNKFNSVRNHALIITKEFQSQEEALT 189
            PP  AA  +PF     +P ++V ++ PAH  +LNKFN V +H L++T++F+SQ+  LT
Sbjct:   63 PPPGAAPFNPFAHP--EPDLVVGDVAPAHVCLLNKFNVVEHHLLLVTRDFESQDALLT 118
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6761.17787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L694_9PHAE7.980e-2581.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQY6_ECTSI2.480e-2279.69Ap4A phosphorylase II n=1 Tax=Ectocarpus siliculos... [more]
A0A150H394_GONPE4.370e-760.98Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J4EWE9_9CHLO1.140e-650.00Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A2T4V0F9_VITXG1.460e-648.21ATP adenylyltransferase n=1 Tax=Vitiosangium sp. (... [more]
D8U0T8_VOLCA2.950e-658.54FHA domain-containing protein n=1 Tax=Volvox carte... [more]
UPI001874EFB09.470e-642.11ATP adenylyltransferase n=1 Tax=Corallococcus sp. ... [more]
A0A8J4DBT7_9CHLO1.020e-548.28Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A7S3QRK2_DUNTE1.400e-553.66Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A3A8N3N5_9DELT1.700e-543.10ATP adenylyltransferase (Fragment) n=3 Tax=Corallo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6761contigF-serratus_M_contig6761:3023..5146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932067.1249948-CDS-F-serratus_M_contig6761:3023..31431622932067.1249948-CDS-F-serratus_M_contig6761:3023..3143Fucus serratus maleCDSF-serratus_M_contig6761 3024..3143 -
1690964129.6918907-CDS-F-serratus_M_contig6761:3023..31431690964129.6918907-CDS-F-serratus_M_contig6761:3023..3143Fucus serratus maleCDSF-serratus_M_contig6761 3024..3143 -
1622932067.1486855-CDS-F-serratus_M_contig6761:5071..51461622932067.1486855-CDS-F-serratus_M_contig6761:5071..5146Fucus serratus maleCDSF-serratus_M_contig6761 5072..5146 -
1690964129.7057402-CDS-F-serratus_M_contig6761:5071..51461690964129.7057402-CDS-F-serratus_M_contig6761:5071..5146Fucus serratus maleCDSF-serratus_M_contig6761 5072..5146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6761.17787.1prot_F-serratus_M_contig6761.17787.1Fucus serratus malepolypeptideF-serratus_M_contig6761 3024..5146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6761.17787.1

>prot_F-serratus_M_contig6761.17787.1 ID=prot_F-serratus_M_contig6761.17787.1|Name=mRNA_F-serratus_M_contig6761.17787.1|organism=Fucus serratus male|type=polypeptide|length=65bp
AAVASPPSTAASTDPFDARVLDPRMIVEELPPAHSLVLNKFNSVRNHALI
ITKEFQSQEEALTEA
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mRNA from alignment at F-serratus_M_contig6761:3023..5146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6761.17787.1 ID=mRNA_F-serratus_M_contig6761.17787.1|Name=mRNA_F-serratus_M_contig6761.17787.1|organism=Fucus serratus male|type=mRNA|length=2124bp|location=Sequence derived from alignment at F-serratus_M_contig6761:3023..5146- (Fucus serratus male)
GCGGCTGTTGCGTCTCCTCCATCCACCGCCGCTAGCACGGACCCTTTCGA
CGCCAGAGTGCTGGACCCTCGGATGGTGAGTGGTGAGGTGACTCGAGGAT
CGCAATCGATCGAATCGATTCTGACCGACCATCGGTGTCATTTCTTTTTG
TTATTCTATCATATACCATCATAGTCTAGTACAGTACTATACCAGGTACT
GCATAATATTATAGTTTTATATTTTTTTTGGACGTGTTAGACGTGTGGTG
CGTGTTCGCAACGCATGAAATTGTTGTTTTTGCTGTGATTTTTTCCTCCT
TTACCGAACAGTGTCACCTACTATTATAAAGAAGTAGTATTATACTACGG
TGCTTTCAACATGTCCACTTCATACCAATAGTAGGTGTGGGAATGAAAGG
CGTGTATTAATTGGTCATAGTCCACGGTGACCTGCCAAGGCAGCACTCGT
TCGCAACTACCTTGAGGTGTACTGGCCCTGTGCCGGCGGACTCTCGGCAG
CGAACGCCATCGATATGCAATTGCGTGACCCGATAAACTCGGGACTGACC
CGATGGCGTACGGCAGTTGCCGCCGCGGAACTCGGGAAGAATCCCGTAAG
TAAGCATCAGATTCAGCCTGAGTATGGAGAATGAGCGAGCTGACGCGGGA
CGGGACGCCTGAACCCGTCTCGCGAGACCAAATTCTCAGGCACGTACGGG
GACAGGGGAATAATCATTTCCTCTGTTCAGCTGACAGCGAGCAGGATTGG
CAACCTCACCCGGTTGATCCATACTCTCCTATATGTGATATACATACATA
CATAATCTGGTACTTTGTAACTAGTAATAGTAGTAATTATTTACAGGATG
TACGGTCGCCCCGGTGGTTCAGTTGGTAACCTCGAAACCTTTTGACATTG
GGACGTGAGTTCGAATCTCGGTACAGTCACACGAACTGGGATTTTTCTTC
ACTATATAAATATAAACCTGGTACTATATATGTGTGTGTACATAAAAATC
GTGCCCAACAAGTGGAGAACTATTGATTCATGGGTACACAAAATTCGACC
TCACGGTCGACGAGAGAAAGGAATGGCTGAGTCCTTCTCGCGATAAAAGT
TAAGGCAAGCATCGCAGAAAAAAAGTGGCGAAATCCTGTGTGACCTTCAT
CCTTTGTGGCCCCGGCTGGTGCGTCCACAGCTCTGACGTTCAGAATAAAG
TACCTTTAAAAAATATCGCTCGGATTTTTTTTTATCGACTCTCGCCCATA
AATTATATACCAATACTGGTATACATAGGTCTATACCTGGTATATATTAC
TGTACGTCGGGGGGAAAACCTGAATCTCCGAAAGCAAGTTTTAGTTTTTC
GTTGAGGGAGGGAGCGGCCTTTAGAGTGATCCATCCGCTTGTCATTCCTA
AGTTATCCCATTAATAGTGTTGAAAGTGTGGGAATATTCTGAACGCATCT
AGACTAGACCTTACGATCATCATCATCATCATCATCATTCATCCCACACT
TTTGTTAACACCGATGTGTGTCTCTCATGTTTTAAAGTCTCCCCCCCCCT
CCTCCCTATGATCGCGCTTTCGTTCATAAACTCAAAATAAGCGAAAAACA
AAATTATAGGAAAATAAAATCCAAAAATATTTAGCATCTGTTGACCTCTT
TTGGCCTCTTGATAATTTTAATTTGATGTGATGTGGGATAGGATAGTTGA
GGTTGGGGGTTTATTTTATTTTATTTTTTTAAAAAAACGCCGTTTTCGAC
GAAGTGTTTTTGTGCGGTACCAGTATATGTGTGTGTGTGTGGGTATCTAT
TCAACTAGGTTTGTGTGTTTGTTAAATTGCACATAACCGCGCAATCCGGC
CCTGTGATACTTACTACGAAAATCTCTGATCAGACGCGACAAAGGGTGTG
TGTGTGTGTGTGTGCGTGTTCTTTTTTGTTGTCAAGTTATTTTCAAAGAG
TCCGCTTTTTTCTCTTTGAAAGCTGCTGCGCGATACTGGAATAACGCCTG
CAGATCGTTGAGGAACTCCCGCCGGCGCACTCCTTAGTGCTGAACAAGTT
TAACTCGGTCAGAAACCACGCCCTGATCATCACCAAGGAGTTCCAGTCCC
AAGAAGAGGCTTTGACCGAAGCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6761:3023..5146-

>mRNA_F-serratus_M_contig6761.17787.1 ID=mRNA_F-serratus_M_contig6761.17787.1|Name=mRNA_F-serratus_M_contig6761.17787.1|organism=Fucus serratus male|type=CDS|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig6761:3023..5146- (Fucus serratus male)
GCGGCTGTTGCGTCTCCTCCATCCACCGCCGCTAGCACGGACCCTTTCGA
CGCCAGAGTGCTGGACCCTCGGATGGCGGCTGTTGCGTCTCCTCCATCCA
CCGCCGCTAGCACGGACCCTTTCGACGCCAGAGTGCTGGACCCTCGGATG
ATCGTTGAGGAACTCCCGCCGGCGCACTCCTTAGTGCTGAACAAGTTTAA
CTCGGTCAGAAACCACGCCCTGATCATCACCAAGGAGTTCCAGTCCCAAG
AAGAGGCTTTGACCGAAGCAATCGTTGAGGAACTCCCGCCGGCGCACTCC
TTAGTGCTGAACAAGTTTAACTCGGTCAGAAACCACGCCCTGATCATCAC
CAAGGAGTTCCAGTCCCAAGAAGAGGCTTTGACCGAAGCA
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