mRNA_F-serratus_M_contig676.17782.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig676.17782.1
Unique Name	mRNA_F-serratus_M_contig676.17782.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig676.17782.1 vs. uniprot
Match: A0A6H5KC67_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.390e-13
Identity = 68/207 (32.85%), Postives = 98/207 (47.34%), Query Frame = 1

Query:   46 RGLEDSELNFIRAVLRKYSSNYEKRIDNRGREIGEEKGNFFTGYASAGCISEKGDENDEVFSLKTFARFSEGWLGSVIATLSRMRQEWAEMEPIKVHGFVSRKETKRQLLETGLLGVFLLRFSETHKGCFILSITCKPDGMTANTGHSQSRLNVKELIVTVQEDGRWKSHYNKEFKDGITYGSLSELVLDKPSLRKLYPDTPKETVF 666
            R L++ +L FIR++LRK             +++ + + N      S  C     D  ++  S+ TF+RFS+ W   ++ TL  +R +WA + PI+VHGF+ R E +  L        FLLRFSE H G  ++S  C          H  S       +V V E G+     +K       Y SL +LV     LR+LYPD PKE VF
Sbjct:  850 RVLDERQLGFIRSILRK------------NQKLAKAEANT---QDSTACEL---DGLEDPISVGTFSRFSQWWT-PLMVTLGNIRNDWARIWPIRVHGFIGRHEAQALLRMKPT--AFLLRFSERHPGKLVVSRAC----------HHHS-------LVEVTEGGQCFMEVDKR-GTRRKYESLHDLVTQNSLLRQLYPDIPKEQVF 1017

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig676.17782.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig676.17782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5KC67_9PHAE	1.390e-13	32.85	SH2 domain-containing protein n=1 Tax=Ectocarpus s...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig676	contig	F-serratus_M_contig676:10708..12649 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	78.6
Seed ortholog evalue	2.7e-12
Seed eggNOG ortholog	2880.D7FNY4
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0023052,GO:0030154,GO:0030587,GO:0031149,GO:0031150,GO:0031154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035556,GO:0042802,GO:0042803,GO:0043157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046983,GO:0047484,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0080134,GO:0090702,GO:0097159,GO:0097696,GO:0099120,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.	STAT cascade
EggNOG OGs	KOG3667@1,KOG3667@2759
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	1771
Cds size	429
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig676.17782.1	prot_F-serratus_M_contig676.17782.1	Fucus serratus male	polypeptide	F-serratus_M_contig676 11002..11601 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932066.4030728-UTR-F-serratus_M_contig676:10707..11001	1622932066.4030728-UTR-F-serratus_M_contig676:10707..11001	Fucus serratus male	UTR	F-serratus_M_contig676 10708..11001 +
1690964129.3142192-UTR-F-serratus_M_contig676:10707..11001	1690964129.3142192-UTR-F-serratus_M_contig676:10707..11001	Fucus serratus male	UTR	F-serratus_M_contig676 10708..11001 +
1622932066.460364-UTR-F-serratus_M_contig676:11601..12649	1622932066.460364-UTR-F-serratus_M_contig676:11601..12649	Fucus serratus male	UTR	F-serratus_M_contig676 11602..12649 +
1690964129.3657053-UTR-F-serratus_M_contig676:11601..12649	1690964129.3657053-UTR-F-serratus_M_contig676:11601..12649	Fucus serratus male	UTR	F-serratus_M_contig676 11602..12649 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932066.4211237-CDS-F-serratus_M_contig676:11001..11163	1622932066.4211237-CDS-F-serratus_M_contig676:11001..11163	Fucus serratus male	CDS	F-serratus_M_contig676 11002..11163 +
1690964129.327891-CDS-F-serratus_M_contig676:11001..11163	1690964129.327891-CDS-F-serratus_M_contig676:11001..11163	Fucus serratus male	CDS	F-serratus_M_contig676 11002..11163 +
1622932066.439858-CDS-F-serratus_M_contig676:11334..11601	1622932066.439858-CDS-F-serratus_M_contig676:11334..11601	Fucus serratus male	CDS	F-serratus_M_contig676 11335..11601 +
1690964129.3506775-CDS-F-serratus_M_contig676:11334..11601	1690964129.3506775-CDS-F-serratus_M_contig676:11334..11601	Fucus serratus male	CDS	F-serratus_M_contig676 11335..11601 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig676:10708..12649+
coding sequence from alignment at F-serratus_M_contig676:10708..12649+

protein sequence of mRNA_F-serratus_M_contig676.17782.1

>prot_F-serratus_M_contig676.17782.1 ID=prot_F-serratus_M_contig676.17782.1|Name=mRNA_F-serratus_M_contig676.17782.1|organism=Fucus serratus male|type=polypeptide|length=143bp
MRQEWAEMEPIKVHGFVSRKETKRQLLETGLLGVFLLRFSETHKGCFILS
ITCKPDGMTANTGHSQSRLNVKELIVTVQEDGRWKSHYNKEFKDGITYGS
LSELVLDKPSLRKLYPDTPKETVFSTSPTTGSSASIIHGMDT*

mRNA from alignment at F-serratus_M_contig676:10708..12649+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig676.17782.1 ID=mRNA_F-serratus_M_contig676.17782.1|Name=mRNA_F-serratus_M_contig676.17782.1|organism=Fucus serratus male|type=mRNA|length=1942bp|location=Sequence derived from alignment at F-serratus_M_contig676:10708..12649+ (Fucus serratus male)
CGCGGGCAAAGTCAGGGATATGGATTTGATAGCTGTATTCAAGCCCGCGG
TTTGGAAGACAGCGAACTGAACTTTATCCGAGCAGTCTTGCGGAAGTATT
CAAGCAATTATGAAAAACGTATAGACAACAGGGGACGAGAAATAGGCGAA
GAAAAGGGCAACTTCTTCACAGGGTACGCTAGCGCAGGCTGCATATCTGA
GAAAGGCGACGAAAACGACGAGGTATTCTCTTTAAAGACATTTGCAAGAT
TCTCCGAGGGTTGGCTGGGTTCGGTCATAGCCACTTTGTCACGAATGCGG
CAAGAGTGGGCAGAGATGGAGCCTATTAAGGTACATGGGTTCGTGAGCCG
TAAAGAGACTAAACGCCAGCTTTTGGAGACAGGTTTGCTCGGGGTTTTCC
TGCTGCGATTCAGCGAGACACACAAAGGGTGCTTCATACTCTCCATCACG
TGCAAGGTAAGAACTAGGTCGGGGGAAAAAAACGATCTATGCTTTGCGCA
GATGCTTGATTCTGTAAAAGTCTTGGAGTTCGAGGTCGAGCGTGTGCGAT
CCTAGATCTTGGGCTCAACGTGCCTTTTTCAACACCCGCCTTATCTCTGC
TCTTCTACCACGTGAATTACGCCACAGCCTGATGGGATGACGGCCAATAC
CGGCCACTCGCAAAGCCGTCTGAACGTCAAGGAGCTCATAGTAACCGTGC
AGGAGGATGGGCGATGGAAATCCCACTACAACAAAGAATTCAAGGACGGT
ATAACGTATGGATCCCTGTCGGAGCTTGTGCTCGACAAACCATCCCTAAG
GAAGCTGTATCCAGACACCCCGAAGGAGACTGTGTTCAGCACCTCACCGA
CCACAGGTTCCAGCGCATCGATCATACATGGTATGGATACTTAAGATAGT
GACGATACTCGTTCCGATTATGACGTTGCTGTGATCCTCTCCGAGGGAAG
ATCAACATCATCAAGCGTCGAGAACCACCAGCAAAATAAGCGGTGAAGCG
ATACCCCCGTGACGAACTTAAACGTCCCGTACGCTGACAACCATGTTCCT
CCTAGACATGCTCGACCTTGGCCATTGAAGGCTGTGCAACAAACAACGTT
TTCGTGTTTTTATTTTTTTGTAGCCGTGAAATAGTCCTTGTCCTTTTTTC
GATAAGGCGCGATTAAGATTTTTTATATTTATTAGTGGTCGTTTATTTGG
CCGGCTCGAATGCCTTTGTCTTCCGGACGCGAAAGTACTGATAGTAACGC
CTCCATCGGATAATTCTGCAGTAAGCAATCACCTGAAGAGAGACTACCAA
GCTGGAGGCGGAGGGTAGATAAATGCTTGTAGTGGCTTAAGCACAGCACA
GCTTTATGGCACAAGTCATTGAAGCTTTGAAGACTGGTGCCCGATCAAAC
CTGTGGTCCACACATTCCTGACTCGGTGTGCGTGCGCTCGTTTGGCGTTG
CATGTCATTCATTTGCCAGGCTACTCTCTTCTCGTGATTCTGTAACTGTC
AACTGTTGCCCTGGTTTTGAAGTAATTTGATTAGCTGGCTCCGTTAGTCG
TGCCTTCGGTTTTCTGTTTTTTGCCCCAATTAGACTACCTCTCTTCATTT
TCAGCATCAGGTTCGTTTGTTACTTTTGCTTGTCTGGTTGTAGCTACTAT
AGCATCAACTAAATAATATATCAGGGTATGGACGAAGGGTCCCGGATCCG
CGGGATCAATGAAAGGTTGATGCTCAGAAGGCTAGTTAGATGCATTCATT
AGTTTTTCTTCTAAAAACAATACAAAGCAAAAACGTAAAACCAGGGAAAG
GCAACCAATATGGCAGCGGCAAACAAAACGCCCGGGGGATACAAGTTCGC
TCCACTTGTGGTTGATCACTTTGTATGGCGAGCGAACCAGCCCAAGCACG
CTTGCTTTGTGAAGAAGTTGTGGATCCTTGTAGATGACGGTG

Coding sequence (CDS) from alignment at F-serratus_M_contig676:10708..12649+

>mRNA_F-serratus_M_contig676.17782.1 ID=mRNA_F-serratus_M_contig676.17782.1|Name=mRNA_F-serratus_M_contig676.17782.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig676:10708..12649+ (Fucus serratus male)
ATGCGGCAAGAGTGGGCAGAGATGGAGCCTATTAAGGTACATGGGTTCGT
GAGCCGTAAAGAGACTAAACGCCAGCTTTTGGAGACAGGTTTGCTCGGGG
TTTTCCTGCTGCGATTCAGCGAGACACACAAAGGGTGCTTCATACTCTCC
ATCACGTGCAAGATGCGGCAAGAGTGGGCAGAGATGGAGCCTATTAAGGT
ACATGGGTTCGTGAGCCGTAAAGAGACTAAACGCCAGCTTTTGGAGACAG
GTTTGCTCGGGGTTTTCCTGCTGCGATTCAGCGAGACACACAAAGGGTGC
TTCATACTCTCCATCACGTGCAAGCCTGATGGGATGACGGCCAATACCGG
CCACTCGCAAAGCCGTCTGAACGTCAAGGAGCTCATAGTAACCGTGCAGG
AGGATGGGCGATGGAAATCCCACTACAACAAAGAATTCAAGGACGGTATA
ACGTATGGATCCCTGTCGGAGCTTGTGCTCGACAAACCATCCCTAAGGAA
GCTGTATCCAGACACCCCGAAGGAGACTGTGTTCAGCACCTCACCGACCA
CAGGTTCCAGCGCATCGATCATACATGGTATGGATACTTAACCTGATGGG
ATGACGGCCAATACCGGCCACTCGCAAAGCCGTCTGAACGTCAAGGAGCT
CATAGTAACCGTGCAGGAGGATGGGCGATGGAAATCCCACTACAACAAAG
AATTCAAGGACGGTATAACGTATGGATCCCTGTCGGAGCTTGTGCTCGAC
AAACCATCCCTAAGGAAGCTGTATCCAGACACCCCGAAGGAGACTGTGTT
CAGCACCTCACCGACCACAGGTTCCAGCGCATCGATCATACATGGTATGG
ATACTTAA