mRNA_F-serratus_M_contig676.17780.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig676.17780.1
Unique NamemRNA_F-serratus_M_contig676.17780.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig676.17780.1 vs. uniprot
Match: A0A6H5KC67_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.330e-15
Identity = 55/142 (38.73%), Postives = 81/142 (57.04%), Query Frame = 2 
Query:    5 GMFEDKTQPLPPIFRLPAPRV--TYRGGVELQRVLTSLEDTDTACVTITGKPGIGKTERALQACYYLRERNLVCSIFFAHCRD----------IVAQHGALPSSGKSCARVECLCQLIGLALGMSLPA-SSPSDLWEFLLKS 391
            G   D+T+ +PP  R P  +   +Y G V +Q V+  L D  T CVT+TG+PG GKTE A+QAC Y+RER+   S  +A C             V  +    +SG S + +E LC+LIG+A+GM  P  S+ ++L +F+ K+
Sbjct:  222 GKLVDETRQVPP--RPPCKKAVSSYMGLVRVQFVVRLLLDPQTVCVTVTGEPGSGKTELAIQACDYVRERHHFDSFLWADCDKAALDACPETFFVIPNSPNGASGDSVS-LEDLCRLIGVAIGMPQPGPSTANELHQFIFKN 360
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BLAST of mRNA_F-serratus_M_contig676.17780.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.980e-14
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 2 
Query:    5 GMFEDKTQPLPPIFRLPAPRV--TYRGGVELQRVLTSLEDTDTACVTITGKPGIGKTERALQACYYLRERNLVCSIFFAHCRDIVAQHGALPSSGKSC-ARVECL--------CQLIGLALGMSLPA-SSPSDLWEFLLKS 391
            G   D+T P  P  R P  +   +Y+G   LQ+V+  L D   ACVTITG+PG GKTERA+QAC Y+RER+      +A C D  A +     SG    A   CL        C+LIGLA+GM  P  +S  +L +F+  +
Sbjct:  125 GQLVDETHPPTP--RPPCKKAVPSYKGLAGLQQVVRLLLDERAACVTITGEPGSGKTERAIQACDYVRERHRFDCFLWADC-DKAALNSCSDKSGNPFFALPTCLKDSAWEDPCRLIGLAIGMPQPGPTSEQELHQFIFNN 262
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BLAST of mRNA_F-serratus_M_contig676.17780.1 vs. uniprot
Match: A0A6H5KH01_9PHAE (CHAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.370e-13
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 2 
Query:    5 GMFEDKTQPLPPIFRLPAPRVTYRGGVELQRVLTSLEDTDTACVTITGKPGIGKTERALQACYYLRERNLVCSIFFAHCRDIVAQHGALPSSGKSCARVECLCQLIGLALGMSLPA-SSPSDLWEFL 382
            G F D+T+  P   R   P   Y+G  ELQ+V+  L D  TACVT+TG+ G GK+ERA+QAC Y+R R+   ++++A  +     H    +   S    +  C+LIG+A+GM+ P  SS  +L  FL
Sbjct:  240 GSFVDETREPPARPRCARPVPFYQGLEELQKVVEMLVDPVTACVTVTGEHGSGKSERAIQACDYVRMRHHFDALWWADMK-----HAMATAINSSVWFYDDPCRLIGIAIGMTQPGPSSEEELVRFL 361
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BLAST of mRNA_F-serratus_M_contig676.17780.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 9.490e-11
Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 2 
Query:    5 GMFEDKTQPLPPIFRLPAPRV--TYRGGVELQRVLTSLEDTDTACVTITGKPGIGKTERALQACYYLRERNLVCSIFFAHC-----------------RDIVAQHGALPSSGKSCARVECLCQLIGLALGMSLPA-SSPSDLWEFL 382
            G   D+T  LPP  R P  +   +Y G   +Q V+  L D   ACVT+TG PG GKTE A+QAC Y+R R+   S  +A C                 R  V  +    +SG S +  E LC+ IG+A+G+  P  S+ ++L +F+
Sbjct:  238 GKLVDETHRLPP--RPPCKKAVSSYMGPARVQHVVRLLLDERAACVTVTGDPGSGKTELAIQACDYVRYRHHFNSFLWADCDKAALDASPYNLVSSADRFYVLPNSPNGASGDSVSS-EDLCRQIGVAIGIPQPGPSTTNELHQFI 380
[Close]
BLAST of mRNA_F-serratus_M_contig676.17780.1 vs. uniprot
Match: A0A6H5JN51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN51_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.050e-8
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 2 
Query:    5 GMFEDKTQPLPPIFRLPAPRV--TYRGGVELQRVLTSLEDTDTACVTITGKPGIGKTERALQACYYLRERNLVCSIFFAHCRDIVAQHGALPSSG 283
            G   D+T P  P  R P  +   +++G   +Q+V+  L +   ACVT+TG+ G GKTERA+QAC Y+RER+   S  +A C        +  SSG
Sbjct:   44 GQLVDETHPPTP--RPPCKKAVPSFKGLAGVQQVVRLLLNPQAACVTVTGEHGSGKTERAIQACDYVRERHHFDSFLWADCDKAAFNSCSDKSSG 136
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig676.17780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KC67_9PHAE6.330e-1538.73SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNY4_ECTSI2.980e-1440.43SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KH01_9PHAE1.370e-1339.37CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
D7FNY6_ECTSI9.490e-1135.62SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JN51_9PHAE2.050e-838.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig676contigF-serratus_M_contig676:7488..8346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D7FNY4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0023052,GO:0030154,GO:0030587,GO:0031149,GO:0031150,GO:0031154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035556,GO:0042802,GO:0042803,GO:0043157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046983,GO:0047484,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0080134,GO:0090702,GO:0097159,GO:0097696,GO:0099120,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.STAT cascade
EggNOG OGsKOG3667@1,KOG3667@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size391
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig676.17780.1prot_F-serratus_M_contig676.17780.1Fucus serratus malepolypeptideF-serratus_M_contig676 7495..8346 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932066.1869707-UTR-F-serratus_M_contig676:7487..74941622932066.1869707-UTR-F-serratus_M_contig676:7487..7494Fucus serratus maleUTRF-serratus_M_contig676 7488..7494 +
1690964129.208993-UTR-F-serratus_M_contig676:7487..74941690964129.208993-UTR-F-serratus_M_contig676:7487..7494Fucus serratus maleUTRF-serratus_M_contig676 7488..7494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932066.2043862-CDS-F-serratus_M_contig676:7494..75811622932066.2043862-CDS-F-serratus_M_contig676:7494..7581Fucus serratus maleCDSF-serratus_M_contig676 7495..7581 +
1690964129.2274091-CDS-F-serratus_M_contig676:7494..75811690964129.2274091-CDS-F-serratus_M_contig676:7494..7581Fucus serratus maleCDSF-serratus_M_contig676 7495..7581 +
1622932066.2234778-CDS-F-serratus_M_contig676:7891..81161622932066.2234778-CDS-F-serratus_M_contig676:7891..8116Fucus serratus maleCDSF-serratus_M_contig676 7892..8116 +
1690964129.238311-CDS-F-serratus_M_contig676:7891..81161690964129.238311-CDS-F-serratus_M_contig676:7891..8116Fucus serratus maleCDSF-serratus_M_contig676 7892..8116 +
1622932066.2492337-CDS-F-serratus_M_contig676:8274..83461622932066.2492337-CDS-F-serratus_M_contig676:8274..8346Fucus serratus maleCDSF-serratus_M_contig676 8275..8346 +
1690964129.2483056-CDS-F-serratus_M_contig676:8274..83461690964129.2483056-CDS-F-serratus_M_contig676:8274..8346Fucus serratus maleCDSF-serratus_M_contig676 8275..8346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig676.17780.1

>prot_F-serratus_M_contig676.17780.1 ID=prot_F-serratus_M_contig676.17780.1|Name=mRNA_F-serratus_M_contig676.17780.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MFEDKTQPLPPIFRLPAPRVTYRGGVELQRVLTSLEDTDTACVTITGKPG
IGKTERALQACYYLRERNLVCSIFFAHCRDIVAQHGALPSSGKSCARVEC
LCQLIGLALGMSLPASSPSDLWEFLLKS
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mRNA from alignment at F-serratus_M_contig676:7488..8346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig676.17780.1 ID=mRNA_F-serratus_M_contig676.17780.1|Name=mRNA_F-serratus_M_contig676.17780.1|organism=Fucus serratus male|type=mRNA|length=859bp|location=Sequence derived from alignment at F-serratus_M_contig676:7488..8346+ (Fucus serratus male)
TCGCGGTATGTTTGAGGACAAGACTCAACCGCTACCGCCGATATTCCGCC
TTCCGGCCCCGAGGGTGACCTACCGAGGTGGGGTCGAACTTCAGGTGAGA
CACAAGAAAGGGTGTGTTTCAGATGTCCTCTGATCAACGATCTTGCATCT
TGGTCGTGTGGAATGAGTTCACGTTGTGGCGGTGTTGAAATTTTTGGCGA
GGAAACCAAACAGGTTTGGCGTACCCCGCTGTTTCTGCTTCTTTGTACCC
AGACTGTAATTCTACAGATAATATGGTAAACGATCCCATCACACTATTAA
TATTCAATTATATCAACGCATCGCCTGGTCCTCCTTGATATGCCCACGCT
CGTCCTCGTTGCCCTGATATTGAAACTACGGCACACTGTCGATTGTGTAC
GAAGCGAGTCTTAACATCGCTGGAGGATACCGACACAGCCTGCGTAACAA
TCACGGGCAAACCAGGCATCGGGAAAACGGAGAGGGCGCTCCAGGCTTGC
TACTACCTGAGAGAGAGGAACCTTGTTTGCTCAATATTTTTCGCGCACTG
CAGAGATATCGTGGCGCAACATGGCGCCCTCCCGAGCTCAGGAAAAAGTT
GCGCGCGCGTCGAGTGCCTTTGCCAGCTCGTGAGTGAAGCGCAAGTCAAC
TTGTTGACGCTTGCCCACTTCGTGTGATTTGATTCAGTAAGCTTCGAGAG
CGTACGTGGCCTTCACCGTGTTGGACTACAAGCTAACATATAAATCATTC
CTCTCAATAGTACCCTCTCCCCGAAATCGGCTGTCAGATCGGGTTGGCAC
TCGGCATGTCCTTACCTGCGAGTTCTCCCAGTGACCTGTGGGAATTCCTG
CTGAAGTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig676:7488..8346+

>mRNA_F-serratus_M_contig676.17780.1 ID=mRNA_F-serratus_M_contig676.17780.1|Name=mRNA_F-serratus_M_contig676.17780.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig676:7488..8346+ (Fucus serratus male)
ATGTTTGAGGACAAGACTCAACCGCTACCGCCGATATTCCGCCTTCCGGC
CCCGAGGGTGACCTACCGAGGTGGGGTCGAACTTCAGATGTTTGAGGACA
AGACTCAACCGCTACCGCCGATATTCCGCCTTCCGGCCCCGAGGGTGACC
TACCGAGGTGGGGTCGAACTTCAGCGAGTCTTAACATCGCTGGAGGATAC
CGACACAGCCTGCGTAACAATCACGGGCAAACCAGGCATCGGGAAAACGG
AGAGGGCGCTCCAGGCTTGCTACTACCTGAGAGAGAGGAACCTTGTTTGC
TCAATATTTTTCGCGCACTGCAGAGATATCGTGGCGCAACATGGCGCCCT
CCCGAGCTCAGGAAAAAGTTGCGCGCGCGTCGAGTGCCTTTGCCAGCTCC
GAGTCTTAACATCGCTGGAGGATACCGACACAGCCTGCGTAACAATCACG
GGCAAACCAGGCATCGGGAAAACGGAGAGGGCGCTCCAGGCTTGCTACTA
CCTGAGAGAGAGGAACCTTGTTTGCTCAATATTTTTCGCGCACTGCAGAG
ATATCGTGGCGCAACATGGCGCCCTCCCGAGCTCAGGAAAAAGTTGCGCG
CGCGTCGAGTGCCTTTGCCAGCTCATCGGGTTGGCACTCGGCATGTCCTT
ACCTGCGAGTTCTCCCAGTGACCTGTGGGAATTCCTGCTGAAGTCCATCG
GGTTGGCACTCGGCATGTCCTTACCTGCGAGTTCTCCCAGTGACCTGTGG
GAATTCCTGCTGAAGTCC
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